EWM22877.1, cds7795 (CDS) Nannochloropsis gaditana

Overview
NameEWM22877.1
Unique Namecds7795
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:42360..42893 -
Alignment locationCM002474.1:41980..42258 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22877.1
ProductWW/Rsp5/WWP
Orig transcript idgnl|cribi|Naga_100676g2.10429.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:42360..42893 -
CM002474.1supercontigCM002474.1:41980..42258 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
Homology
[Close]
BLAST of EWM22877.1 vs. NCBI_GenBank
Match: gi|585103532|gb|EWM22876.1| (WW/Rsp5/WWP [Nannochloropsis gaditana])

HSP 1 Score: 530.791 bits (1366), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0 
Query:    1 MTKEGGPTQTAEARSSSNGDHSGSNTNPLGGLQDHVSTTNVPQGGRRSRWEADQPSQAALPTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEKPLKDKSKAFVPPPPPGSPPK 270
            MTKEGGPTQTAEARSSSNGDHSGSNTNPLGGLQDHVSTTNVPQGGRRSRWEADQPSQAALPTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEKPLKDKSKAFVPPPPPGSPPK
Sbjct:   61 MTKEGGPTQTAEARSSSNGDHSGSNTNPLGGLQDHVSTTNVPQGGRRSRWEADQPSQAALPTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEKPLKDKSKAFVPPPPPGSPPK 330
[Close]
BLAST of EWM22877.1 vs. NCBI_GenBank
Match: gi|585103533|gb|EWM22877.1| (WW/Rsp5/WWP [Nannochloropsis gaditana])

HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0 
Query:    1 MTKEGGPTQTAEARSSSNGDHSGSNTNPLGGLQDHVSTTNVPQGGRRSRWEADQPSQAALPTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEKPLKDKSKAFVPPPPPGSPPK 270
            MTKEGGPTQTAEARSSSNGDHSGSNTNPLGGLQDHVSTTNVPQGGRRSRWEADQPSQAALPTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEKPLKDKSKAFVPPPPPGSPPK
Sbjct:    1 MTKEGGPTQTAEARSSSNGDHSGSNTNPLGGLQDHVSTTNVPQGGRRSRWEADQPSQAALPTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEKPLKDKSKAFVPPPPPGSPPK 270
[Close]
BLAST of EWM22877.1 vs. NCBI_GenBank
Match: gi|553187683|ref|XP_005854658.1| (hypothetical protein NGA_0243800 [Nannochloropsis gaditana CCMP526] >gi|422294403|gb|EKU21703.1| hypothetical protein NGA_0243800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0
Identity = 267/270 (98.89%), Postives = 267/270 (98.89%), Query Frame = 0 
Query:    1 MTKEGGPTQTAEARSSSNGDHSGSNTNPLGGLQDHVSTTNVPQGGRRSRWEADQPSQAALPTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEKPLKDKSKAFVPPPPPGSPPK 270
            MTKEGGPTQTAEAR SSNGDH GSNTNPLGGLQDHVSTTNVPQGGRRSRWEADQPSQAA PTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEKPLKDKSKAFVPPPPPGSPPK
Sbjct:   44 MTKEGGPTQTAEARGSSNGDHGGSNTNPLGGLQDHVSTTNVPQGGRRSRWEADQPSQAAPPTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEKPLKDKSKAFVPPPPPGSPPK 313
The following BLAST results are available for this feature:
BLAST of EWM22877.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585103532|gb|EWM22876.1|0.000e+0100.00WW/Rsp5/WWP [Nannochloropsis gaditana][more]
gi|585103533|gb|EWM22877.1|0.000e+0100.00WW/Rsp5/WWP [Nannochloropsis gaditana][more]
gi|553187683|ref|XP_005854658.1|0.000e+098.89hypothetical protein NGA_0243800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7816rna7816Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications