EWM22885.1, cds7784 (CDS) Nannochloropsis gaditana

Overview
NameEWM22885.1
Unique Namecds7784
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:6892..6928 -
Alignment locationCM002474.1:6730..6797 -
Alignment locationCM002474.1:6355..6492 -
Alignment locationCM002474.1:6021..6154 -
Alignment locationCM002474.1:5713..5916 -
Alignment locationCM002474.1:5591..5663 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22885.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100160g3.4645.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:6892..6928 -
CM002474.1supercontigCM002474.1:6730..6797 -
CM002474.1supercontigCM002474.1:6355..6492 -
CM002474.1supercontigCM002474.1:6021..6154 -
CM002474.1supercontigCM002474.1:5713..5916 -
CM002474.1supercontigCM002474.1:5591..5663 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22885.1 vs. NCBI_GenBank
Match: gi|585103543|gb|EWM22885.1| (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 444.121 bits (1141), Expect = 9.622e-158
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query:    1 MQAFRIACLCLLQTSHPFAIMKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISELPDTVTEAFYGITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLIIMEEGYIYVRCSVFLIYVSMCASRRLCLGATTR 217
            MQAFRIACLCLLQTSHPFAIMKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISELPDTVTEAFYGITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLIIMEEGYIYVRCSVFLIYVSMCASRRLCLGATTR
Sbjct:    1 MQAFRIACLCLLQTSHPFAIMKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISELPDTVTEAFYGITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLIIMEEGYIYVRCSVFLIYVSMCASRRLCLGATTR 217          
BLAST of EWM22885.1 vs. NCBI_GenBank
Match: gi|553183816|ref|XP_005853972.1| (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >gi|422295089|gb|EKU22388.1| hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 312.383 bits (799), Expect = 2.819e-106
Identity = 153/174 (87.93%), Postives = 162/174 (93.10%), Query Frame = 0
Query:   21 MKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISELPDTVTEAFYGITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLIIMEEGYIYVR 194
            MKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISE+P+ VTE  YGITVEPLV+ LS KNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPK FANGTGTGTSFLP+PL+GLVLSKQYK+TSKIRIGKGIPSGTYVPF + V+LVGGD I  EEG +YVR
Sbjct:    1 MKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISEVPNNVTEVLYGITVEPLVSPLSSKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKIFANGTGTGTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGTYVPFQIFVDLVGGDFITREEGQVYVR 174          
BLAST of EWM22885.1 vs. NCBI_GenBank
Match: gi|585111994|gb|EWM29458.1| (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana])

HSP 1 Score: 97.0561 bits (240), Expect = 1.575e-21
Identity = 76/197 (38.58%), Postives = 102/197 (51.78%), Query Frame = 0
Query:   25 SSLLVAVATLLS---NAAAQ-----EYTGSVCVKSLSVKAGRQATITTSFLISEL-------------------PDTVTEAFYGITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLIIMEEGYIYVR 194
            SSL++A A ++S    A AQ     +  G   VK +SVKAG + T+TTSFL  E                    P+      YG  +E L N    K  T+  K+SK     DV L ++RI PNTWRPK  +N TG+ T+F+ +P  GLV  + YKI +K RIGK  PSG+ + F V  E  GG  ++ E   +YVR
Sbjct:    6 SSLILASAVIISAIGRATAQLFPDFDAIGHSTVKPISVKAGGRVTLTTSFLFLETRRRQLRELAFADEILYWATPNEADIPAYG-DLEELSNKN--KTKTSHPKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNITGS-TNFMSIPTTGLVALEDYKIINKFRIGKRYPSGSVITFYVYAEY-GGFNLLQEFLDVYVR 197          
BLAST of EWM22885.1 vs. NCBI_GenBank
Match: gi|553184967|ref|XP_005854180.1| (hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526] >gi|553192556|ref|XP_005855596.1| hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >gi|422293459|gb|EKU20759.1| hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >gi|422294881|gb|EKU22181.1| hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 82.8037 bits (203), Expect = 1.122e-16
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 0
Query:  101 KTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLIIMEEGYIYVR 194
            K+SK     DV L ++RI PNTWRPK  +N TG+ T+F+ +P  GLV+ K YKI +K RIGK  PSGT + F V V+  GG  ++ E   +YVR
Sbjct:   41 KSSKHGNSTDVRLVRSRIIPNTWRPKLRSNITGS-TNFMSVPTTGLVVLKDYKIINKFRIGKRYPSGTVISFYVFVDY-GGSPLLDEVFDVYVR 132          
BLAST of EWM22885.1 vs. NCBI_GenBank
Match: gi|585112813|gb|EWM30157.1| (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana])

HSP 1 Score: 75.485 bits (184), Expect = 1.756e-13
Identity = 56/181 (30.94%), Postives = 87/181 (48.07%), Query Frame = 0
Query:   18 FAIMKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISELPDTVTEAFYGITVEPL----VNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLIIMEEGYIYVR 194
             A M +FSS     A +++ A          VK L+V+ G + T T +F++S      T+    +    L    + +L+ KN T K K S      ++ +R +RISPN WRPK   N +   +    +P +G +L K YK+  KIR+GKG+   T     V V L+ G  I  E   +Y++
Sbjct:   13 LAGMALFSSTTFVDAQVIAQA---------MVKPLAVRPGGRITATLNFVVSSFASNATDPAIAVGFATLGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLRTNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRK--VSVTLIAGSYIFEESLDVYIK 182          
BLAST of EWM22885.1 vs. NCBI_GenBank
Match: gi|585102369|gb|EWM21985.1| (hypothetical protein Naga_100745g2 [Nannochloropsis gaditana])

HSP 1 Score: 70.4774 bits (171), Expect = 1.033e-10
Identity = 44/137 (32.12%), Postives = 76/137 (55.47%), Query Frame = 0
Query:   49 VKSLSVKAGRQATITTSFLISELPDTVTEAFYGITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLII 185
            + SL V  G   T+++ F+  E P++  + F  +T+    ++  ++N     +T K  G  ++T +++ + PNTWRPK   +  G    +  LP DG VL K YKI  K+R+ +G+ SGT +PF++ V     DL++
Sbjct:  208 LDSLVVSPGGPLTVSSDFIFVERPES--DVFVSLTIGQEASASGFRN-----RTQKAIGARELTFKRSTLRPNTWRPKPRYSIVGNEVVWQ-LPFDGFVLKKTYKIKWKLRVDRGVTSGTQLPFILRVGSNMQDLMV 336          
BLAST of EWM22885.1 vs. NCBI_GenBank
Match: gi|585103321|gb|EWM22729.1| (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >gi|585103322|gb|EWM22730.1| hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 70.0922 bits (170), Expect = 1.208e-10
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 0
Query:   80 YGITVEPLVNSLSWKNHTAKNKTSKF---AGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFL-PLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGV 176
            +  +++P  N   +++ TA NKTSK      DV ++  +++I+PNTWRPK        G + +  LP DG  L K+YKIT  +RIGK +PSGT +P  + V
Sbjct:  233 FACSLDPFFN---FQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSV 330          
BLAST of EWM22885.1 vs. NCBI_GenBank
Match: gi|585103332|gb|EWM22739.1| (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 69.3218 bits (168), Expect = 2.406e-10
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:   80 YGITVEPLVN--SLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFL-PLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGV 176
            +  +++P  N  SL+  N T+K++  K   DV ++  +++I+PNTWRPK        G + +  LP DG  L K+YKIT  +RIGK +PSGT +P  + V
Sbjct:  233 FACSLDPFFNFQSLTTGNKTSKHR--KDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPLYLSV 330          
BLAST of EWM22885.1 vs. NCBI_GenBank
Match: gi|553178404|ref|XP_005852549.1| (hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526] >gi|422295984|gb|EKU23283.1| hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 63.929 bits (154), Expect = 2.893e-9
Identity = 57/182 (31.32%), Postives = 84/182 (46.15%), Query Frame = 0
Query:    9 LCLLQTS-HPFAIMKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISELP--DTVTEAFYG--ITVEPLVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLII 185
            +C + TS  PFA+  V S   +A A L               KSL    GR+ T+    L  E P  D +     G   TV+     L  + H+ K       GD  ++ ++ ++ PNTWRPK     T    ++  LP+ G+V  K YKI  +IR+G+G+ SGT +P  V V     DL++
Sbjct:    8 VCGIVTSLSPFALGTVISPTFLAQAYL---------------KSLVQAPGRRFTLLLDLLFLERPVEDVIVSCLLGGNATVQGHATRLL-QGHSTKVLKRARLGDEALSFQRGKLRPNTWRPKLRYVKTNDELAWT-LPVGGIVFGKTYKIKWRIRLGRGVASGTELPLTVRVADWMEDLVV 172          
The following BLAST results are available for this feature:
BLAST of EWM22885.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585103543|gb|EWM22885.1|9.622e-158100.00hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
gi|553183816|ref|XP_005853972.1|2.819e-10687.93hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
gi|585111994|gb|EWM29458.1|1.575e-2138.58hypothetical protein Naga_100083g24 [Nannochlorops... [more]
gi|553184967|ref|XP_005854180.1|1.122e-1648.94hypothetical protein NGA_0188501 [Nannochloropsis ... [more]
gi|585112813|gb|EWM30157.1|1.756e-1330.94hypothetical protein Naga_100115g3 [Nannochloropsi... [more]
gi|585102369|gb|EWM21985.1|1.033e-1032.12hypothetical protein Naga_100745g2 [Nannochloropsi... [more]
gi|585103321|gb|EWM22729.1|1.208e-1039.60hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
gi|585103332|gb|EWM22739.1|2.406e-1039.00hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
gi|553178404|ref|XP_005852549.1|2.893e-931.32hypothetical protein NGA_0710700, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7805rna7805Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications