rna7805, rna7805 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7805
Unique Name	rna7805
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	483
Alignment location	CM002474.1:5591..6928 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100160g3.4645.mrna
Orig protein id	gnl\|cribi\|Naga_100160g3.4645
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:5591..6928 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100160g3	gene7562	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7805	rna7805-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22885.1	cds7784	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:5591..6928-
coding sequence from alignment at CM002474.1:5591..6928-

mRNA sequence

>rna7805 ID=rna7805|Name=rna7805|organism=Nannochloropsis gaditana|type=mRNA|length=483bp
ATGATACGGAAAGTCCACATCGAAAAGCAGCTGACAAGTATTGTCGTGTC
TTGTGTTCGCGAATGTCATCCCTTGCTCATAAAAACAATGGGAAGTCTAA
AGAGAAGGGAGACTGGCCTCATTAATAGACGTCTTTCACTCGTGCAATCA
CCTGTCAAGCTCTGTAAACTGCATATGATGTCGGGCGCAGGCGGTGGACC
TTACGGCCATTATGGCTCCGGGGCAGGTGGAGGCGTTGGTGAAGGTGGGA
CTACCGGCGTTGGCGGGGCCATGGCGCGGGAGCTAAGCGGCGTGACTTAT
TTATGCGGAGATTGTGGTGCCCAGAACGTGATAAAAAACAAGGATCCAAT
TCGTTGCCGGCAGTGCAACCATAGGATTATGTACAAAATGCGGACGAAGC
GCCAAAAATGCCTGAGTGAGTGCGTGTGGACAGCTGCCTGGAGAGGATGC
GATGGCTTCAGTTGGATGATTGCCTGGCTTTAG

protein sequence of rna7805

>rna7805-protein ID=rna7805-protein|Name=rna7805|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MQAFRIACLCLLQTSHPFAIMKVFSSLLVAVATLLSNAAAQEYTGSVCVK
SLSVKAGRQATITTSFLISELPDTVTEAFYGITVEPLVNSLSWKNHTAKN
KTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSK
QYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLIIMEEGYIYVRCSVFLI
YVSMCASRRLCLGATTR

mRNA from alignment at CM002474.1:5591..6928-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7805 ID=rna7805|Name=rna7805|organism=Nannochloropsis gaditana|type=mRNA|length=1338bp|location=Sequence derived from alignment at CM002474.1:5591..6928- (Nannochloropsis gaditana)
ATGCAAGCTTTCCGTATAGCTTGTTTGTGCCTGCTTCGTACGTTGTACCG
TGACTGCGAGCAAATGGACGCTGCTTTCGCAACATCTTCCAGGTCTATAT
TTATTCCTCCTCTTTTCCACTCATGCCTCAGAGACATCACACCCTTTTGC
AATCATGAAAGTCTTCTCCTCCCTGCTTGTAGCGGTGGCTACACTGCTGG
TAAGATTAGATCAGGAACGATGAATAAGCATACATGTTCGAGCACTTTGC
TGATAAAGACCACGTAGGGAAATTGGAAGTATGACGAAAATGAGCCATGT
GTCTTCCTCAGTAAGCATGGGTGTCTATTGCATGCTGTTGCAGTGCTGCT
GCCACTGTAATGGTAGGGATGATCGATATTCTCATGTAGGTCTTGTCTAC
TCGTTGCCTTCTTTCATCTGATTTTCACGTCCACAGTCCAATGCTGCGGC
GCAAGAATACACTGGAAGTGTTTGCGTGAAGTCACTCTCCGTCAAAGCCG
GTCGTCAAGCTACCATCACGACCTCTTTCCTCATCTCGGAACTCCCAGAT
ACGGTGACGGAGGCGTTCTATGGGGTACGTCTGCGAAGCATCCTGGACAC
GGGTGGTGTGGCTGTGCGCATTCATACGCGATTACGGTCACTAGCTTGTT
GCTTGCGATGATCTCTAGCCATAACTACATGCTAGAAGTATATGGTATGC
TTGGAGGATATGGTATATATACATCGAAGCATGCCTGGATCTAACCTTCT
CTCCTACCGTAATACTATGGCCAGATCACGGTAGAGCCCCTAGTAAACTC
CTTATCTTGGAAGAACCACACGGCCAAGAACAAAACGAGCAAGTTCGCGG
GCGACGTTGATGTCACTCTGCGGAAAACTCGCATCTCCCCCAATACCTGG
CGGCCCAAGTGAGTTGTGGTGGAAAAGTCGAAGCTTGTGTTTCGATGGCC
TCCAAGTCAATGGGGTTGATCTCCTGATTGTCATGTTTCTTCCTTTTTCG
ACGCTCAATTAGGACTTTCGCCAACGGTACTGGAACGGGCACCTCCTTCT
TGCCATTGCCGCTGGACGGTCTGGTGTTGAGTAAGCAGTACAAAATCACC
TCGAAGATTCGCATTGGAAAGGGTATTCCTTCTGGCACCTACGTTCCTTT
TCTGGTCGGTGTGGAGTTGGTGGGAGGCGATTTAATCATTATGGAAGAGG
GATACATCTACGTCAGGTAGATCCCTCCCTTGCAGAGCTAAGTCTCCTTC
AACACGGTTGTGAAGGTGCAGTGTGTTCTTGATATATGTTTCTATGTGTG
CGTCACGACGTCTGTGTCTAGGTGCAACTACTCGTTAG

Coding sequence (CDS) from alignment at CM002474.1:5591..6928-

>rna7805 ID=rna7805|Name=rna7805|organism=Nannochloropsis gaditana|type=CDS|length=3924bp|location=Sequence derived from alignment at CM002474.1:5591..6928- (Nannochloropsis gaditana)
GTGCAGTGTGTTCTTGATATATGTTTCTATGTGTGCGTCACGACGTCTGT
GTCTAGGTGCAACTACTCGTTAGGACTTTCGCCAACGGTACTGGAACGGG
CACCTCCTTCTTGCCATTGCCGCTGGACGGTCTGGTGTTGAGTAAGCAGT
ACAAAATCACCTCGAAGATTCGCATTGGAAAGGGTATTCCTTCTGGCACC
TACGTTCCTTTTCTGGTCGGTGTGGAGTTGGTGGGAGGCGATTTAATCAT
TATGGAAGAGGGATACATCTACGTCAGATCACGGTAGAGCCCCTAGTAAA
CTCCTTATCTTGGAAGAACCACACGGCCAAGAACAAAACGAGCAAGTTCG
CGGGCGACGTTGATGTCACTCTGCGGAAAACTCGCATCTCCCCCAATACC
TGGCGGCCCAATCCAATGCTGCGGCGCAAGAATACACTGGAAGTGTTTGC
GTGAAGTCACTCTCCGTCAAAGCCGGTCGTCAAGCTACCATCACGACCTC
TTTCCTCATCTCGGAACTCCCAGATACGGTGACGGAGGCGTTCTATGGGA
GACATCACACCCTTTTGCAATCATGAAAGTCTTCTCCTCCCTGCTTGTAG
CGGTGGCTACACTGCTGATGCAAGCTTTCCGTATAGCTTGTTTGTGCCTG
CTTCGTGCAGTGTGTTCTTGATATATGTTTCTATGTGTGCGTCACGACGT
CTGTGTCTAGGTGCAACTACTCGTTAGGACTTTCGCCAACGGTACTGGAA
CGGGCACCTCCTTCTTGCCATTGCCGCTGGACGGTCTGGTGTTGAGTAAG
CAGTACAAAATCACCTCGAAGATTCGCATTGGAAAGGGTATTCCTTCTGG
CACCTACGTTCCTTTTCTGGTCGGTGTGGAGTTGGTGGGAGGCGATTTAA
TCATTATGGAAGAGGGATACATCTACGTCAGATCACGGTAGAGCCCCTAG
TAAACTCCTTATCTTGGAAGAACCACACGGCCAAGAACAAAACGAGCAAG
TTCGCGGGCGACGTTGATGTCACTCTGCGGAAAACTCGCATCTCCCCCAA
TACCTGGCGGCCCAATCCAATGCTGCGGCGCAAGAATACACTGGAAGTGT
TTGCGTGAAGTCACTCTCCGTCAAAGCCGGTCGTCAAGCTACCATCACGA
CCTCTTTCCTCATCTCGGAACTCCCAGATACGGTGACGGAGGCGTTCTAT
GGGAGACATCACACCCTTTTGCAATCATGAAAGTCTTCTCCTCCCTGCTT
GTAGCGGTGGCTACACTGCTGATGCAAGCTTTCCGTATAGCTTGTTTGTG
CCTGCTTCGTGCAGTGTGTTCTTGATATATGTTTCTATGTGTGCGTCACG
ACGTCTGTGTCTAGGTGCAACTACTCGTTAGGACTTTCGCCAACGGTACT
GGAACGGGCACCTCCTTCTTGCCATTGCCGCTGGACGGTCTGGTGTTGAG
TAAGCAGTACAAAATCACCTCGAAGATTCGCATTGGAAAGGGTATTCCTT
CTGGCACCTACGTTCCTTTTCTGGTCGGTGTGGAGTTGGTGGGAGGCGAT
TTAATCATTATGGAAGAGGGATACATCTACGTCAGATCACGGTAGAGCCC
CTAGTAAACTCCTTATCTTGGAAGAACCACACGGCCAAGAACAAAACGAG
CAAGTTCGCGGGCGACGTTGATGTCACTCTGCGGAAAACTCGCATCTCCC
CCAATACCTGGCGGCCCAATCCAATGCTGCGGCGCAAGAATACACTGGAA
GTGTTTGCGTGAAGTCACTCTCCGTCAAAGCCGGTCGTCAAGCTACCATC
ACGACCTCTTTCCTCATCTCGGAACTCCCAGATACGGTGACGGAGGCGTT
CTATGGGAGACATCACACCCTTTTGCAATCATGAAAGTCTTCTCCTCCCT
GCTTGTAGCGGTGGCTACACTGCTGATGCAAGCTTTCCGTATAGCTTGTT
TGTGCCTGCTTCGTGCAGTGTGTTCTTGATATATGTTTCTATGTGTGCGT
CACGACGTCTGTGTCTAGGTGCAACTACTCGTTAGGACTTTCGCCAACGG
TACTGGAACGGGCACCTCCTTCTTGCCATTGCCGCTGGACGGTCTGGTGT
TGAGTAAGCAGTACAAAATCACCTCGAAGATTCGCATTGGAAAGGGTATT
CCTTCTGGCACCTACGTTCCTTTTCTGGTCGGTGTGGAGTTGGTGGGAGG
CGATTTAATCATTATGGAAGAGGGATACATCTACGTCAGATCACGGTAGA
GCCCCTAGTAAACTCCTTATCTTGGAAGAACCACACGGCCAAGAACAAAA
CGAGCAAGTTCGCGGGCGACGTTGATGTCACTCTGCGGAAAACTCGCATC
TCCCCCAATACCTGGCGGCCCAATCCAATGCTGCGGCGCAAGAATACACT
GGAAGTGTTTGCGTGAAGTCACTCTCCGTCAAAGCCGGTCGTCAAGCTAC
CATCACGACCTCTTTCCTCATCTCGGAACTCCCAGATACGGTGACGGAGG
CGTTCTATGGGAGACATCACACCCTTTTGCAATCATGAAAGTCTTCTCCT
CCCTGCTTGTAGCGGTGGCTACACTGCTGATGCAAGCTTTCCGTATAGCT
TGTTTGTGCCTGCTTCGTGCAGTGTGTTCTTGATATATGTTTCTATGTGT
GCGTCACGACGTCTGTGTCTAGGTGCAACTACTCGTTAGGACTTTCGCCA
ACGGTACTGGAACGGGCACCTCCTTCTTGCCATTGCCGCTGGACGGTCTG
GTGTTGAGTAAGCAGTACAAAATCACCTCGAAGATTCGCATTGGAAAGGG
TATTCCTTCTGGCACCTACGTTCCTTTTCTGGTCGGTGTGGAGTTGGTGG
GAGGCGATTTAATCATTATGGAAGAGGGATACATCTACGTCAGATCACGG
TAGAGCCCCTAGTAAACTCCTTATCTTGGAAGAACCACACGGCCAAGAAC
AAAACGAGCAAGTTCGCGGGCGACGTTGATGTCACTCTGCGGAAAACTCG
CATCTCCCCCAATACCTGGCGGCCCAATCCAATGCTGCGGCGCAAGAATA
CACTGGAAGTGTTTGCGTGAAGTCACTCTCCGTCAAAGCCGGTCGTCAAG
CTACCATCACGACCTCTTTCCTCATCTCGGAACTCCCAGATACGGTGACG
GAGGCGTTCTATGGGAGACATCACACCCTTTTGCAATCATGAAAGTCTTC
TCCTCCCTGCTTGTAGCGGTGGCTACACTGCTGATGCAAGCTTTCCGTAT
AGCTTGTTTGTGCCTGCTTCGTGCAGTGTGTTCTTGATATATGTTTCTAT
GTGTGCGTCACGACGTCTGTGTCTAGGTGCAACTACTCGTTAGGACTTTC
GCCAACGGTACTGGAACGGGCACCTCCTTCTTGCCATTGCCGCTGGACGG
TCTGGTGTTGAGTAAGCAGTACAAAATCACCTCGAAGATTCGCATTGGAA
AGGGTATTCCTTCTGGCACCTACGTTCCTTTTCTGGTCGGTGTGGAGTTG
GTGGGAGGCGATTTAATCATTATGGAAGAGGGATACATCTACGTCAGATC
ACGGTAGAGCCCCTAGTAAACTCCTTATCTTGGAAGAACCACACGGCCAA
GAACAAAACGAGCAAGTTCGCGGGCGACGTTGATGTCACTCTGCGGAAAA
CTCGCATCTCCCCCAATACCTGGCGGCCCAATCCAATGCTGCGGCGCAAG
AATACACTGGAAGTGTTTGCGTGAAGTCACTCTCCGTCAAAGCCGGTCGT
CAAGCTACCATCACGACCTCTTTCCTCATCTCGGAACTCCCAGATACGGT
GACGGAGGCGTTCTATGGGAGACATCACACCCTTTTGCAATCATGAAAGT
CTTCTCCTCCCTGCTTGTAGCGGTGGCTACACTGCTGATGCAAGCTTTCC
GTATAGCTTGTTTGTGCCTGCTTC

Synonyms

Publications