EWM22887.1, cds7783 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|585103545|gb|EWM22887.1| (dna-directed rna polymerases and iii subunit rpabc4 [Nannochloropsis gaditana]) HSP 1 Score: 326.635 bits (836), Expect = 3.639e-113 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 Query: 1 MIRKVHIEKQLTSIVVSCVRECHPLLIKTMGSLKRRETGLINRRLSLVQSPVKLCKLHMMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLSECVWTAAWRGCDGFSWMIAWL 160 MIRKVHIEKQLTSIVVSCVRECHPLLIKTMGSLKRRETGLINRRLSLVQSPVKLCKLHMMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLSECVWTAAWRGCDGFSWMIAWL Sbjct: 1 MIRKVHIEKQLTSIVVSCVRECHPLLIKTMGSLKRRETGLINRRLSLVQSPVKLCKLHMMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLSECVWTAAWRGCDGFSWMIAWL 160
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|553183813|ref|XP_005853971.1| (DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Nannochloropsis gaditana CCMP526] >gi|422295088|gb|EKU22387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 156.762 bits (395), Expect = 5.199e-47 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 Query: 59 MMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134 MMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR Sbjct: 1 MMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 76
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|511007411|gb|EPB88701.1| (hypothetical protein HMPREF1544_04460 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 71.2478 bits (173), Expect = 1.044e-13 Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0 Query: 86 GVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLS 139 G GA R+ +TYLC DCGA+N +K ++PIRC+ C HRIMYK RTKR KC + Sbjct: 3 GYQGAPIRQPVAMTYLCADCGAENQLKPREPIRCQDCGHRIMYKKRTKRSKCTA 56
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|299471331|emb|CBN79287.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 71.2478 bits (173), Expect = 1.233e-13 Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0 Query: 85 TGVGGAMARELS----GVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134 VG M E GVTYLCGDCG+ N+IK KDPI+CRQC +RIMYK RTKR Sbjct: 8 AAVGDEMEEEQDNPTGGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 61
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|1023277746|gb|KZT72597.1| (hypothetical protein DAEQUDRAFT_722760 [Daedalea quercina L-15889]) HSP 1 Score: 70.0922 bits (170), Expect = 3.638e-13 Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 0 Query: 67 PYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134 P +Y + A G G GG MA + YLC DCGA+N I++++PIRCR+C HRIMYK RTKR Sbjct: 5 PATNYSTQAPPG-------GPGGFMAAPRQEMEYLCADCGAKNEIRSREPIRCRECGHRIMYKKRTKR 65
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|729713710|emb|CEI90024.1| (Putative DNA-directed RNA polymerase I, II, and III subunit RPABC4 [Rhizopus microsporus]) HSP 1 Score: 69.707 bits (169), Expect = 5.066e-13 Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0 Query: 86 GVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQK 136 G GA R+ + +TYLC DCGA+N +K ++PIRC+ C HRIMYK RTKR K Sbjct: 3 GYQGAPIRQPAAMTYLCADCGAENQLKPREPIRCQDCGHRIMYKKRTKRSK 53
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|1012967763|gb|KYQ42508.1| (DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Hypsizygus marmoreus]) HSP 1 Score: 69.3218 bits (168), Expect = 7.404e-13 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0 Query: 76 GGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134 G G GG +G G M + Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR Sbjct: 7 GTGSNTGGQSGGGNYMMAPRQEMEYICADCGAKNEIKSREPIRCRECGHRIMYKKRTKR 65
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|749887243|gb|KIJ56561.1| (hypothetical protein M422DRAFT_22721 [Sphaerobolus stellatus SS14]) HSP 1 Score: 68.5514 bits (166), Expect = 1.150e-12 Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 0 Query: 83 GTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134 G+ G GA + + YLC DCGA+N IK ++PIRC++C HRIMYK RTKR Sbjct: 8 GSAGQPGAFIPQPQQMEYLCADCGAKNEIKPREPIRCKECGHRIMYKKRTKR 59
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|1102194985|ref|XP_019024160.1| (hypothetical protein SAICODRAFT_7644 [Saitoella complicata NRRL Y-17804] >gi|1063229851|gb|ODQ53047.1| hypothetical protein SAICODRAFT_7644 [Saitoella complicata NRRL Y-17804]) HSP 1 Score: 68.5514 bits (166), Expect = 1.200e-12 Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0 Query: 86 GVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134 G A+AR + YLC DCG++N I+ K+PIRCR+C HR+MYK RT R Sbjct: 11 SAGAAIARPTQQIVYLCADCGSKNQIQAKEPIRCRECGHRVMYKQRTTR 59
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|1045911141|gb|OCH88304.1| (hypothetical protein OBBRIDRAFT_836685 [Obba rivulosa]) HSP 1 Score: 68.5514 bits (166), Expect = 1.245e-12 Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0 Query: 73 SGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134 S GG G +G G A + + YLC DCGA+N IK+++PIRCR+C HRIMYK RTKR Sbjct: 3 SQQGGNYGNPPASG-GAAYMPQRQEMEYLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKR 63 The following BLAST results are available for this feature:
BLAST of EWM22887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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