EWM22887.1, cds7783 (CDS) Nannochloropsis gaditana

Overview
NameEWM22887.1
Unique Namecds7783
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:5407..5530 -
Alignment locationCM002474.1:3930..4115 -
Alignment locationCM002474.1:3575..3666 -
Alignment locationCM002474.1:3398..3478 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22887.1
Productdna-directed rna polymerases and iii subunit rpabc4
Orig transcript idgnl|cribi|Naga_100160g2.4647.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:5407..5530 -
CM002474.1supercontigCM002474.1:3930..4115 -
CM002474.1supercontigCM002474.1:3575..3666 -
CM002474.1supercontigCM002474.1:3398..3478 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR029040RPABC4/Spt4
IPR006591RNAP_P/RPABC4
Homology
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|585103545|gb|EWM22887.1| (dna-directed rna polymerases and iii subunit rpabc4 [Nannochloropsis gaditana])

HSP 1 Score: 326.635 bits (836), Expect = 3.639e-113
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query:    1 MIRKVHIEKQLTSIVVSCVRECHPLLIKTMGSLKRRETGLINRRLSLVQSPVKLCKLHMMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLSECVWTAAWRGCDGFSWMIAWL 160
            MIRKVHIEKQLTSIVVSCVRECHPLLIKTMGSLKRRETGLINRRLSLVQSPVKLCKLHMMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLSECVWTAAWRGCDGFSWMIAWL
Sbjct:    1 MIRKVHIEKQLTSIVVSCVRECHPLLIKTMGSLKRRETGLINRRLSLVQSPVKLCKLHMMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLSECVWTAAWRGCDGFSWMIAWL 160          
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|553183813|ref|XP_005853971.1| (DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Nannochloropsis gaditana CCMP526] >gi|422295088|gb|EKU22387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 156.762 bits (395), Expect = 5.199e-47
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0
Query:   59 MMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134
            MMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR
Sbjct:    1 MMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 76          
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|511007411|gb|EPB88701.1| (hypothetical protein HMPREF1544_04460 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 71.2478 bits (173), Expect = 1.044e-13
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   86 GVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLS 139
            G  GA  R+   +TYLC DCGA+N +K ++PIRC+ C HRIMYK RTKR KC +
Sbjct:    3 GYQGAPIRQPVAMTYLCADCGAENQLKPREPIRCQDCGHRIMYKKRTKRSKCTA 56          
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|299471331|emb|CBN79287.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.2478 bits (173), Expect = 1.233e-13
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   85 TGVGGAMARELS----GVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134
              VG  M  E      GVTYLCGDCG+ N+IK KDPI+CRQC +RIMYK RTKR
Sbjct:    8 AAVGDEMEEEQDNPTGGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 61          
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|1023277746|gb|KZT72597.1| (hypothetical protein DAEQUDRAFT_722760 [Daedalea quercina L-15889])

HSP 1 Score: 70.0922 bits (170), Expect = 3.638e-13
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 0
Query:   67 PYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134
            P  +Y + A  G       G GG MA     + YLC DCGA+N I++++PIRCR+C HRIMYK RTKR
Sbjct:    5 PATNYSTQAPPG-------GPGGFMAAPRQEMEYLCADCGAKNEIRSREPIRCRECGHRIMYKKRTKR 65          
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|729713710|emb|CEI90024.1| (Putative DNA-directed RNA polymerase I, II, and III subunit RPABC4 [Rhizopus microsporus])

HSP 1 Score: 69.707 bits (169), Expect = 5.066e-13
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0
Query:   86 GVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQK 136
            G  GA  R+ + +TYLC DCGA+N +K ++PIRC+ C HRIMYK RTKR K
Sbjct:    3 GYQGAPIRQPAAMTYLCADCGAENQLKPREPIRCQDCGHRIMYKKRTKRSK 53          
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|1012967763|gb|KYQ42508.1| (DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Hypsizygus marmoreus])

HSP 1 Score: 69.3218 bits (168), Expect = 7.404e-13
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0
Query:   76 GGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134
            G G   GG +G G  M      + Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR
Sbjct:    7 GTGSNTGGQSGGGNYMMAPRQEMEYICADCGAKNEIKSREPIRCRECGHRIMYKKRTKR 65          
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|749887243|gb|KIJ56561.1| (hypothetical protein M422DRAFT_22721 [Sphaerobolus stellatus SS14])

HSP 1 Score: 68.5514 bits (166), Expect = 1.150e-12
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 0
Query:   83 GTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134
            G+ G  GA   +   + YLC DCGA+N IK ++PIRC++C HRIMYK RTKR
Sbjct:    8 GSAGQPGAFIPQPQQMEYLCADCGAKNEIKPREPIRCKECGHRIMYKKRTKR 59          
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|1102194985|ref|XP_019024160.1| (hypothetical protein SAICODRAFT_7644 [Saitoella complicata NRRL Y-17804] >gi|1063229851|gb|ODQ53047.1| hypothetical protein SAICODRAFT_7644 [Saitoella complicata NRRL Y-17804])

HSP 1 Score: 68.5514 bits (166), Expect = 1.200e-12
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   86 GVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134
              G A+AR    + YLC DCG++N I+ K+PIRCR+C HR+MYK RT R
Sbjct:   11 SAGAAIARPTQQIVYLCADCGSKNQIQAKEPIRCRECGHRVMYKQRTTR 59          
BLAST of EWM22887.1 vs. NCBI_GenBank
Match: gi|1045911141|gb|OCH88304.1| (hypothetical protein OBBRIDRAFT_836685 [Obba rivulosa])

HSP 1 Score: 68.5514 bits (166), Expect = 1.245e-12
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0
Query:   73 SGAGGGVGEGGTTGVGGAMARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKR 134
            S  GG  G    +G G A   +   + YLC DCGA+N IK+++PIRCR+C HRIMYK RTKR
Sbjct:    3 SQQGGNYGNPPASG-GAAYMPQRQEMEYLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKR 63          
The following BLAST results are available for this feature:
BLAST of EWM22887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103545|gb|EWM22887.1|3.639e-113100.00dna-directed rna polymerases and iii subunit rpabc... [more]
gi|553183813|ref|XP_005853971.1|5.199e-47100.00DNA-directed RNA polymerases I, II, and III subuni... [more]
gi|511007411|gb|EPB88701.1|1.044e-1357.41hypothetical protein HMPREF1544_04460 [Mucor circi... [more]
gi|299471331|emb|CBN79287.1|1.233e-1362.96conserved unknown protein [Ectocarpus siliculosus][more]
gi|1023277746|gb|KZT72597.1|3.638e-1350.00hypothetical protein DAEQUDRAFT_722760 [Daedalea q... [more]
gi|729713710|emb|CEI90024.1|5.066e-1358.82Putative DNA-directed RNA polymerase I, II, and II... [more]
gi|1012967763|gb|KYQ42508.1|7.404e-1354.24DNA-directed RNA polymerases I, II, and III subuni... [more]
gi|749887243|gb|KIJ56561.1|1.150e-1255.77hypothetical protein M422DRAFT_22721 [Sphaerobolus... [more]
gi|1102194985|ref|XP_019024160.1|1.200e-1255.10hypothetical protein SAICODRAFT_7644 [Saitoella co... [more]
gi|1045911141|gb|OCH88304.1|1.245e-1253.23hypothetical protein OBBRIDRAFT_836685 [Obba rivul... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7804rna7804Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications