rna7804, rna7804 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7804
Unique Name	rna7804
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1570
Alignment location	CM002474.1:3398..5530 -

Link to JBrowse

Properties


Property Name	Value
Product	dna-directed rna polymerases and iii subunit rpabc4
Orig transcript id	gnl\|cribi\|Naga_100160g2.4647.mrna
Orig protein id	gnl\|cribi\|Naga_100160g2.4647
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:3398..5530 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100160g2	gene7561	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7804	rna7804-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22887.1	cds7783	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:3398..5530-
coding sequence from alignment at CM002474.1:3398..5530-

mRNA sequence

>rna7804 ID=rna7804|Name=rna7804|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp
ATGGCGGGTCCCCAGAGCCCGGCGGGAACACGAGACGCACGAGAGGAAAG
CGGAGCGGTGAAAGGCCACGAAGACACCAGGGGAGAAAAGGGGAAAGGGA
GCTCTGGGCGCGGAGAAGGAGGACTGCAGGGGAACGGAGGTCTCTCGGTG
GCGGCGGTGGGAAATTCCCCTTCTCCCACCGCAGGCACGAAGCCGAAGAG
CCGGGCAGGACGATGCGATGGAGGCGACGGGCTACGGATGGGGGACCATA
TCGGGGGGGGGGATGGCGGCTTGTTACGAGCCGGGAATGCACAAGGCGAA
AAGGTGGACGAGACAGGAGACGTCTCCAAGGACAAGGGTTTGGAGGAGCC
AGGGGAGAAACAAGAACCCCTGACGGGGTGCGCTGAAATAGCGTCGGCCT
CTCCTTCCTCCTCTTCCCCTCCTTCCGGCACTATCTCGAGCTCACACACT
CCCCCTGCCGCTTCTCCTTCCTCACTGCCCTCTTCAGAAGGTCTTGACAC
CTCATCCACCTCCCTCCCCCGCCCCGTCCGCCGTCCGTCCCTCCGTCTTC
CGACTCCTTCCCCTTCTGTGCTTGATGAACTTACCCTCTCCCACTGCCTG
GATGCCTACACATCGCGTGAGACGCTCTCTTGTCCATACAAATGCGCATC
CTGCGGCGCAACTTCCTCATCCTGCTCCAAGCAATTGACATTACACCGGC
TGCCCAACGTTTTCATCTTTCATATGAAACGCTTTGACGCCTTCTCCGCC
CGCAAAATTGAGAAGTTCGTCCGGTACCCTCCCAAAGGTCTGAATATGGC
CCCTTACATGCACGCGTGGTGCAACGCGGAAATGAGGCGGGAGGGGACAA
CGGCGAAAAGGAAGGAAGAAAGTTTGGGGAATGAAAATGGTGGCGACAGG
CGTGGGAAAAGGGCTCGTGAAGGGGAAGGCTCCCCTCAAACGGGATGGTC
TCATGGACGAAGGGAGGGCATGAACGGCGGATCCGTGAGCCCTGAGATTC
TCTATGACCTGTTTGCAGTCGTAGAGCACATGGGGGCCTCCCTTCAGCAA
GGGCATTACAAAGCATTCGTACAGGAAGGGACAGAGGGAGGGAAGGAAGG
AGGGAGGGAGGGAGGGCGGGCACCGGCCTGGTGCGTTTGCAACGATACTT
GGGTCCAGGCGGTGAGCATTGAAAAGGTCTTGAACGCGCAAGCTTACCTC
CTGTTTTACATCCGACGGGGTTGGAGCCCAAAGGCAGGCTGAAGGTTACG
AAGGGATACGGAAAGGATAGATCGAGAGGGTGAGCTAGGTTGAAGATGAC
AAACTGTGCTGGCGATGCAGGAACGGAAGGTGTGTGCTTCTTTCGGTGGT
CTTTTGTGAGGGTGGAATGAGGATGGAGGGGGTCAAGTTGCTGAAGTAGT
GTACCATATTCGACAAACCAGATGTCACTATAGTGAGTGTCTGAAATAGT
GTGAAGCGTTCGACGGGCTAGATGTTACGTAAGGTTAGGAGCTGCAAATG
GAAGTGAATCGGATTACTCTAGGGTCTGTTGGGAAAACGAAGTTCAATCG
AATCGTCTGTGAAAGATAAT

protein sequence of rna7804

>rna7804-protein ID=rna7804-protein|Name=rna7804|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MIRKVHIEKQLTSIVVSCVRECHPLLIKTMGSLKRRETGLINRRLSLVQS
PVKLCKLHMMSGAGGGPYGHYGSGAGGGVGEGGTTGVGGAMARELSGVTY
LCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRQKCLSECVWTAAWRGC
DGFSWMIAWL

mRNA from alignment at CM002474.1:3398..5530-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7804 ID=rna7804|Name=rna7804|organism=Nannochloropsis gaditana|type=mRNA|length=2133bp|location=Sequence derived from alignment at CM002474.1:3398..5530- (Nannochloropsis gaditana)
ATGATACGGAAAGTCCACATCGAAAAGCAGCTGACAAGTATTGTCGTGTC
TTGTGTTCGCGAATGTCATCCCTTGCTCATAAAAACAATGGGAAGTCTAA
AGAGAAGGGAGACTGGCCTCATTAGTCGCTTCCATGTTGCAATTGCGAGT
CGTTGGTTTCCTTTCTTTTATGATAGCAGTTTTGTAGTGCCCTCCTTCTC
CCTTTGTGCACATCAAATTGTCATGCGAATCAACGATTTCAAATGATTTA
TTGTCAAATGTTTTTTTGGATCTTTGACACTGCAAGCCAAGGTTGTTGAC
AGCTCAGGTTTCTAAAAGCCCTAATTTATGGTCTTACATATGCATTTGTT
AGAAATCGTGTAAATGTGATTTTTCAGAATTGAAAGGTAGCAGATAACAC
ATAAGAAATGCTATATGTTGACGAATTCATTGCTAAATTTTTTTGAATAA
TTTCATCCGATTATCTTACCACTGCGGGATTCATCACTTTCATCAACATC
CATCTGAAGGCCAACACAATGTACCGCATCTCCCGCTATTCAAGTTTATC
AGCCAAAGCGTACGACATTTAGACAAACCATATGCAACTATCTACCTTAA
TAGTCTGTTGGTGACAATTATTGAAGCTGATATTCCGGAGAGGAAAGAGG
GACGGTGCGGTTTGTCTCGTCGGTCTACACGCGGGTAGCTTTTACATCCC
TTCCTTTATAATCACCGAGTCATATTTTTTGACACAATTTTTTCTCCCTT
CAGTCATTAATCAAGGCATTGCACGTCTTAAACAATCAACGGGACAGTGA
TCCGTGTGCAACTTTATCATCAGCACATTCCCATCGGCAATTATTCAGCA
GTCCTGTATTCTGCCTGTTCGGGATTGTATCATAGTCAGGATCATATCCG
GCAAGATTGCCCAGGTTTGAAGCAAAAACAACCATTTCAACCGCAGTTTT
TGGCAACCCGATGCCATCGAAGCGGGACAAAGGCCTCGCATGCAAATTCG
AAGTTCCTCTGTGGGACTGGCCCATATGAAGTGTTGTCGAGGCAACGTCC
GGCTTGCGGCGTCCGAGGACGGTCAAATGTTTCCGTGAGGCAAAAGCCCG
TTCAGTCTGTCAGGAGTCTTACGGATAGATACCAGAAAGAGTCACGAAAG
GACCTTGCTCGCAGCATGAGATGAATATCACCTTGTCTTTGGGCGTTTTC
CTCGTGCTGTGTGGTTCATTCGGGTTGGGAGGGTCGCGGCTGACGATGAC
CACCTCTTTCTGTCAGAGGGGTACGGAGATGCTATGATAGCAGCCAGGCC
CACACTATCTTCTATGCGTGTCCTCATGCATCTATGCTCTCTTAACACGT
GCAAACCTGAAATCCATCACACTTGCGGGTGCTTACATATTATTTTCTTC
CTACCGTCATCCAAGATAGACGTCTTTCACTCGTGCAATCACCTGTCAAG
CTCTGTAAACTGCATATGATGTCGGGCGCAGGCGGTGGACCTTACGGCCA
TTATGGCTCCGGGGCAGGTGGAGGCGTTGGTGAAGGTGGGACTACCGGCG
TTGGCGGGGCCATGGCGCGGGAGCTAAGCGGCGTGACTTATTTATGCGGA
GGTAAGTGGGAGGCATTGATTGTAGTGGTCATGTGAGGATGATTGGATCA
CATCGAGAAGGGATACTTTAAGACGGTTCATCGCAATTCCTGCTGTCCGC
AACATTCAACTCTGAGACTGGAGGTCTGTGCGTTAAAGCTTGACTGACTT
GTACATCACTGACGCCTGAGAGCAAAGTATACTCCAGTGGCTGACTCCTA
AGTATGTATCGCACATTCAACACGTCTCCCGTCTCTTATCTGTCTCTTAA
CTCGGATAATACAGATTGTGGTGCCCAGAACGTGATAAAAAACAAGGATC
CAATTCGTTGCCGGCAGTGCAACCATAGGATTATGTACAAAATGCGGACG
AAGCGCGTGGTGCAATTTGAAGCCCGATAGGAAAATGGGAGAGGAAGTGA
CAGACAATCAAGCTGCAAAGTTTAATTTTCTGGGGAGACGATATTTGTAC
AGCAAAAATGCCTGAGTGAGTGCGTGTGGACAGCTGCCTGGAGAGGATGC
GATGGCTTCAGTTGGATGATTGCCTGGCTTTAG

Coding sequence (CDS) from alignment at CM002474.1:3398..5530-

>rna7804 ID=rna7804|Name=rna7804|organism=Nannochloropsis gaditana|type=CDS|length=1932bp|location=Sequence derived from alignment at CM002474.1:3398..5530- (Nannochloropsis gaditana)
CAAAAATGCCTGAGTGAGTGCGTGTGGACAGCTGCCTGGAGAGGATGCGA
TGGCTTCAGTTGGATGATTGCCTGGCTTTAGATTGTGGTGCCCAGAACGT
GATAAAAAACAAGGATCCAATTCGTTGCCGGCAGTGCAACCATAGGATTA
TGTACAAAATGCGGACGAAGCGCATAGACGTCTTTCACTCGTGCAATCAC
CTGTCAAGCTCTGTAAACTGCATATGATGTCGGGCGCAGGCGGTGGACCT
TACGGCCATTATGGCTCCGGGGCAGGTGGAGGCGTTGGTGAAGGTGGGAC
TACCGGCGTTGGCGGGGCCATGGCGCGGGAGCTAAGCGGCGTGACTTATT
TATGCGGAGATGATACGGAAAGTCCACATCGAAAAGCAGCTGACAAGTAT
TGTCGTGTCTTGTGTTCGCGAATGTCATCCCTTGCTCATAAAAACAATGG
GAAGTCTAAAGAGAAGGGAGACTGGCCTCATTACAAAAATGCCTGAGTGA
GTGCGTGTGGACAGCTGCCTGGAGAGGATGCGATGGCTTCAGTTGGATGA
TTGCCTGGCTTTAGATTGTGGTGCCCAGAACGTGATAAAAAACAAGGATC
CAATTCGTTGCCGGCAGTGCAACCATAGGATTATGTACAAAATGCGGACG
AAGCGCATAGACGTCTTTCACTCGTGCAATCACCTGTCAAGCTCTGTAAA
CTGCATATGATGTCGGGCGCAGGCGGTGGACCTTACGGCCATTATGGCTC
CGGGGCAGGTGGAGGCGTTGGTGAAGGTGGGACTACCGGCGTTGGCGGGG
CCATGGCGCGGGAGCTAAGCGGCGTGACTTATTTATGCGGAGATGATACG
GAAAGTCCACATCGAAAAGCAGCTGACAAGTATTGTCGTGTCTTGTGTTC
GCGAATGTCATCCCTTGCTCATAAAAACAATGGGAAGTCTAAAGAGAAGG
GAGACTGGCCTCATTACAAAAATGCCTGAGTGAGTGCGTGTGGACAGCTG
CCTGGAGAGGATGCGATGGCTTCAGTTGGATGATTGCCTGGCTTTAGATT
GTGGTGCCCAGAACGTGATAAAAAACAAGGATCCAATTCGTTGCCGGCAG
TGCAACCATAGGATTATGTACAAAATGCGGACGAAGCGCATAGACGTCTT
TCACTCGTGCAATCACCTGTCAAGCTCTGTAAACTGCATATGATGTCGGG
CGCAGGCGGTGGACCTTACGGCCATTATGGCTCCGGGGCAGGTGGAGGCG
TTGGTGAAGGTGGGACTACCGGCGTTGGCGGGGCCATGGCGCGGGAGCTA
AGCGGCGTGACTTATTTATGCGGAGATGATACGGAAAGTCCACATCGAAA
AGCAGCTGACAAGTATTGTCGTGTCTTGTGTTCGCGAATGTCATCCCTTG
CTCATAAAAACAATGGGAAGTCTAAAGAGAAGGGAGACTGGCCTCATTAC
AAAAATGCCTGAGTGAGTGCGTGTGGACAGCTGCCTGGAGAGGATGCGAT
GGCTTCAGTTGGATGATTGCCTGGCTTTAGATTGTGGTGCCCAGAACGTG
ATAAAAAACAAGGATCCAATTCGTTGCCGGCAGTGCAACCATAGGATTAT
GTACAAAATGCGGACGAAGCGCATAGACGTCTTTCACTCGTGCAATCACC
TGTCAAGCTCTGTAAACTGCATATGATGTCGGGCGCAGGCGGTGGACCTT
ACGGCCATTATGGCTCCGGGGCAGGTGGAGGCGTTGGTGAAGGTGGGACT
ACCGGCGTTGGCGGGGCCATGGCGCGGGAGCTAAGCGGCGTGACTTATTT
ATGCGGAGATGATACGGAAAGTCCACATCGAAAAGCAGCTGACAAGTATT
GTCGTGTCTTGTGTTCGCGAATGTCATCCCTTGCTCATAAAAACAATGGG
AAGTCTAAAGAGAAGGGAGACTGGCCTCATTA

Synonyms

Publications