EWM22884.1, cds7782 (CDS) Nannochloropsis gaditana

Overview
NameEWM22884.1
Unique Namecds7782
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:1752..2993 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22884.1
Productubiquitin carboxyl-terminal hydrolase 31
Orig transcript idgnl|cribi|Naga_100160g1.4644.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:1752..2993 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR028889USP_dom
IPR018200USP_CS
IPR001394Peptidase_C19_UCH
Homology
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|585103542|gb|EWM22884.1| (ubiquitin carboxyl-terminal hydrolase 31 [Nannochloropsis gaditana])

HSP 1 Score: 840.491 bits (2170), Expect = 0.000e+0
Identity = 413/413 (100.00%), Postives = 413/413 (100.00%), Query Frame = 0
Query:    1 MAGPQSPAGTRDAREESGAVKGHEDTRGEKGKGSSGRGEGGLQGNGGLSVAAVGNSPSPTAGTKPKSRAGRCDGGDGLRMGDHIGGGDGGLLRAGNAQGEKVDETGDVSKDKGLEEPGEKQEPLTGCAEIASASPSSSSPPSGTISSSHTPPAASPSSLPSSEGLDTSSTSLPRPVRRPSLRLPTPSPSVLDELTLSHCLDAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSPEILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIRRGWSPKAG 413
            MAGPQSPAGTRDAREESGAVKGHEDTRGEKGKGSSGRGEGGLQGNGGLSVAAVGNSPSPTAGTKPKSRAGRCDGGDGLRMGDHIGGGDGGLLRAGNAQGEKVDETGDVSKDKGLEEPGEKQEPLTGCAEIASASPSSSSPPSGTISSSHTPPAASPSSLPSSEGLDTSSTSLPRPVRRPSLRLPTPSPSVLDELTLSHCLDAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSPEILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIRRGWSPKAG
Sbjct:    1 MAGPQSPAGTRDAREESGAVKGHEDTRGEKGKGSSGRGEGGLQGNGGLSVAAVGNSPSPTAGTKPKSRAGRCDGGDGLRMGDHIGGGDGGLLRAGNAQGEKVDETGDVSKDKGLEEPGEKQEPLTGCAEIASASPSSSSPPSGTISSSHTPPAASPSSLPSSEGLDTSSTSLPRPVRRPSLRLPTPSPSVLDELTLSHCLDAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSPEILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIRRGWSPKAG 413          
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|298705588|emb|CBJ28839.1| (Ubiquitin carboxyl-terminal hydrolase, putative [Ectocarpus siliculosus])

HSP 1 Score: 113.235 bits (282), Expect = 3.110e-23
Identity = 76/222 (34.23%), Postives = 110/222 (49.55%), Query Frame = 0
Query:  195 TLSHCLDAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRRE--GTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSPEILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIRRG----WSP 410
            +++ C   + +RE+L+    C SC A S   +KQ++   LP V + H+KRFDA + RKI+ FV +P +GL+M  Y+  W  A       G T+     S    + G  +G        +            ++G   +P + YDL AVV H G  + QGHY AFV       KE GR       W   +DTWV  V  E+VL+++AY+LFY +RG    W P
Sbjct:  906 SITDCFARFAARESLTVRMACDSCSAASVCKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAAASSSAGGVTSGASPSSSPPLDTGTAKGAPPATPAAAGAK-------AELSGDVPAPSLPYDLLAVVNHSGG-MAQGHYTAFV-------KEIGR-------WFRFDDTWVHEVEEEEVLSSEAYILFYFQRGADAAWRP 1105          
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|788023679|ref|XP_011779741.1| (cysteine peptidase, Clan CA, family C19,putative [Trypanosoma brucei gambiense DAL972] >gi|261334483|emb|CBH17477.1| cysteine peptidase, Clan CA, family C19,putative [Trypanosoma brucei gambiense DAL972])

HSP 1 Score: 104.375 bits (259), Expect = 2.083e-20
Identity = 76/223 (34.08%), Postives = 104/223 (46.64%), Query Frame = 0
Query:  183 LPTPSPSVLDELTLSHCLDAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSPEILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIR 405
              T SP +  + TL HCL    ++E L         G T ++ +KQ  LH+LPNV I H+KRF+ F A K+ KFVRY PK LNM P+    C A    +GT  K +           RRG +   G  S  +   +         + S E LY+L A+  H G+SL  GHY + V+              R  +W  CND  +   S +  L+  AY+LFY R
Sbjct:  301 FVTLSPEICGQ-TLEHCLSKLCAKERLEGRVYITPRGVTVNA-TKQFMLHKLPNVLIIHLKRFNEFGA-KVGKFVRY-PKILNMGPF----CTA----DGTLKKLRNHK--------RRGYKPSNGPASCDSSIYNSE-----ASNRSVECLYELNAICVHQGSSLSHGHYFSVVR-------------ARNESWIECNDGHISHCSEDHALSQSAYMLFYSR 485          
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|1115875690|emb|SCU66384.1| (ubiquitin carboxyl-terminal hydrolase, putative [Trypanosoma equiperdum])

HSP 1 Score: 104.375 bits (259), Expect = 2.304e-20
Identity = 76/223 (34.08%), Postives = 104/223 (46.64%), Query Frame = 0
Query:  183 LPTPSPSVLDELTLSHCLDAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSPEILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIR 405
              T SP +  + TL HCL    ++E L         G T ++ +KQ  LH+LPNV I H+KRF+ F A K+ KFVRY PK LNM P+    C A    +GT  K +           RRG +   G  S  +   +         + S E LY+L A+  H G+SL  GHY + V+              R  +W  CND  +   S +  L+  AY+LFY R
Sbjct:  301 FVTLSPEICGQ-TLEHCLSKLCAKERLEGRVYITPRGVTVNA-TKQFMLHKLPNVLIIHLKRFNEFGA-KVGKFVRY-PKILNMGPF----CTA----DGTLKKLRNHK--------RRGYKPSNGPASCDSSIYNSE-----ASNRSVECLYELNAICVHQGSSLSHGHYFSVVR-------------ARNESWIECNDGHISHCSEDHALSQSAYMLFYSR 485          
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|71755375|ref|XP_828602.1| (ubiquitin carboxyl-terminal hydrolase [Trypanosoma brucei brucei TREU927] >gi|70833988|gb|EAN79490.1| ubiquitin carboxyl-terminal hydrolase, putative [Trypanosoma brucei brucei TREU927])

HSP 1 Score: 100.908 bits (250), Expect = 2.917e-19
Identity = 74/223 (33.18%), Postives = 103/223 (46.19%), Query Frame = 0
Query:  183 LPTPSPSVLDELTLSHCLDAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSPEILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIR 405
              T SP +  + TL HCL    ++E L         G T ++ +KQ  LH+LPNV I H+KRF+ F A K+ KFVRY PK LN+ P+    C      +GT  K +           RRG +   G  S  +   +         + S E LY+L A+  H G+SL  GHY + V+              R  +W  CND  +   S +  L+  AY+LFY R
Sbjct:  301 FVTLSPEICGQ-TLEHCLSKLCAKERLEGRVYITPRGVTVNA-TKQFMLHKLPNVLIIHLKRFNEFGA-KVGKFVRY-PKILNVGPF----CTT----DGTLKKLRNHK--------RRGYKPSNGPASCDSSIYNSE-----ASNRSVECLYELNAICVHQGSSLSHGHYFSVVR-------------ARNESWIECNDGHISHCSEDHALSQSAYMLFYSR 485          
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|342185653|emb|CCC95138.1| (putative ubiquitin carboxyl-terminal hydrolase [Trypanosoma congolense IL3000])

HSP 1 Score: 100.523 bits (249), Expect = 3.543e-19
Identity = 77/216 (35.65%), Postives = 103/216 (47.69%), Query Frame = 0
Query:  195 TLSHCLDAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGG-----DRRGKRAREGEGSPQTGWSHGRREGMNGGSVSPEILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIR 405
            TL  CL    + E L  P      G    + +KQ  LH+LPNV I H+KRF+ F AR + KF+RY PK LN+APY    C  +    G  ++R++E  G    G     D+RG            G+S G  EG NG     E LY+L +V  H G+S+  GHY   V+  + G             W  CND  +     E+ L+ QAY+LFY R
Sbjct:  311 TLERCLAHLFAEEELDGPVYKTPRGVKVHA-TKQFKLHKLPNVLIIHIKRFNEFGAR-VGKFIRY-PKVLNIAPY----CTTDGTLRGLHSQRRDE--GKSCDGLLPSYDKRG------------GFSVG--EGSNG---DIEYLYELNSVCVHQGSSISHGHYFTVVR-ASNG------------MWIECNDAHISNCDEERALSQQAYMLFYSR 487          
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|570321508|gb|ETO69456.1| (hypothetical protein F444_13962 [Phytophthora parasitica P1976])

HSP 1 Score: 98.5969 bits (244), Expect = 1.079e-18
Identity = 67/216 (31.02%), Postives = 98/216 (45.37%), Query Frame = 0
Query:  195 TLSHCLDAYTSRETL--SCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSP-EILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIRRG 407
            T+   L  + + E L  S    C  C    +   K L LH LPNV +FH++R D +  +K+ K V++P  GLNM P+                     S+G +   DR+ + ++  E               NG    P E +YDL AVV H G S+  GHY +FV++      EG R       W + +D  V+ V  ++V  +QAYLL+Y RR 
Sbjct:  390 TIESLLRQFAAEEELRGSNQVYCVRCSNYQTH-YKSLNLHTLPNVLVFHIRRLDFYRQQKLLKTVQFPLTGLNMRPFT--------------------SVGIDEASDRKKRDSKNAE---------------NGTPDDPSEYVYDLVAVVNHHGESVNGGHYTSFVRD------EGQR-------WILFDDVEVKTVPADEVEASQAYLLYYTRRN 556          
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|570321510|gb|ETO69458.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976])

HSP 1 Score: 97.8265 bits (242), Expect = 1.217e-18
Identity = 67/216 (31.02%), Postives = 98/216 (45.37%), Query Frame = 0
Query:  195 TLSHCLDAYTSRETL--SCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSP-EILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIRRG 407
            T+   L  + + E L  S    C  C    +   K L LH LPNV +FH++R D +  +K+ K V++P  GLNM P+                     S+G +   DR+ + ++  E               NG    P E +YDL AVV H G S+  GHY +FV++      EG R       W + +D  V+ V  ++V  +QAYLL+Y RR 
Sbjct:  276 TIESLLRQFAAEEELRGSNQVYCVRCSNYQTH-YKSLNLHTLPNVLVFHIRRLDFYRQQKLLKTVQFPLTGLNMRPFT--------------------SVGIDEASDRKKRDSKNAE---------------NGTPDDPSEYVYDLVAVVNHHGESVNGGHYTSFVRD------EGQR-------WILFDDVEVKTVPADEVEASQAYLLYYTRRN 442          
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|567983894|gb|ETL34277.1| (hypothetical protein L916_13468 [Phytophthora parasitica] >gi|568013377|gb|ETL87554.1| hypothetical protein L917_13276 [Phytophthora parasitica] >gi|570945283|gb|ETP10540.1| hypothetical protein F441_13858 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 98.2117 bits (243), Expect = 1.589e-18
Identity = 67/216 (31.02%), Postives = 98/216 (45.37%), Query Frame = 0
Query:  195 TLSHCLDAYTSRETL--SCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSP-EILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIRRG 407
            T+   L  + + E L  S    C  C    +   K L LH LPNV +FH++R D +  +K+ K V++P  GLNM P+                     S+G +   DR+ + ++  E               NG    P E +YDL AVV H G S+  GHY +FV++      EG R       W + +D  V+ V  ++V  +QAYLL+Y RR 
Sbjct:  390 TIESLLRQFAAEEELRGSNQVYCVRCSNYQTH-YKSLNLHTLPNVLVFHIRRLDFYRQQKLLKTVQFPLTGLNMRPFT--------------------SVGIDEASDRKKRDSKNAE---------------NGRPDDPSEYVYDLVAVVNHHGESVNGGHYTSFVRD------EGQR-------WILFDDVEVKTVPADEVEASQAYLLYYTRRN 556          
BLAST of EWM22884.1 vs. NCBI_GenBank
Match: gi|570976993|gb|ETP38695.1| (hypothetical protein F442_13770 [Phytophthora parasitica P10297])

HSP 1 Score: 98.2117 bits (243), Expect = 1.648e-18
Identity = 67/216 (31.02%), Postives = 98/216 (45.37%), Query Frame = 0
Query:  195 TLSHCLDAYTSRETL--SCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSVSP-EILYDLFAVVEHMGASLQQGHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIRRG 407
            T+   L  + + E L  S    C  C    +   K L LH LPNV +FH++R D +  +K+ K V++P  GLNM P+                     S+G +   DR+ + ++  E               NG    P E +YDL AVV H G S+  GHY +FV++      EG R       W + +D  V+ V  ++V  +QAYLL+Y RR 
Sbjct:  390 TIESLLRQFAAEEELRGSNQVYCVRCSNYQTH-YKSLNLHTLPNVLVFHIRRLDFYRQQKLLKTVQFPLTGLNMRPFT--------------------SVGIDEASDRKKRDSKNAE---------------NGRPDDPSEYVYDLVAVVNHHGESVNGGHYTSFVRD------EGQR-------WILFDDVEVKTVPADEVEASQAYLLYYTRRN 556          
The following BLAST results are available for this feature:
BLAST of EWM22884.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103542|gb|EWM22884.1|0.000e+0100.00ubiquitin carboxyl-terminal hydrolase 31 [Nannochl... [more]
gi|298705588|emb|CBJ28839.1|3.110e-2334.23Ubiquitin carboxyl-terminal hydrolase, putative [E... [more]
gi|788023679|ref|XP_011779741.1|2.083e-2034.08cysteine peptidase, Clan CA, family C19,putative [... [more]
gi|1115875690|emb|SCU66384.1|2.304e-2034.08ubiquitin carboxyl-terminal hydrolase, putative [T... [more]
gi|71755375|ref|XP_828602.1|2.917e-1933.18ubiquitin carboxyl-terminal hydrolase [Trypanosoma... [more]
gi|342185653|emb|CCC95138.1|3.543e-1935.65putative ubiquitin carboxyl-terminal hydrolase [Tr... [more]
gi|570321508|gb|ETO69456.1|1.079e-1831.02hypothetical protein F444_13962 [Phytophthora para... [more]
gi|570321510|gb|ETO69458.1|1.217e-1831.02hypothetical protein, variant 2 [Phytophthora para... [more]
gi|567983894|gb|ETL34277.1|1.589e-1831.02hypothetical protein L916_13468 [Phytophthora para... [more]
gi|570976993|gb|ETP38695.1|1.648e-1831.02hypothetical protein F442_13770 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7803rna7803Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications