rna7803, rna7803 (mRNA) Nannochloropsis gaditana

Overview
Namerna7803
Unique Namerna7803
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length471
Alignment locationCM002474.1:1752..3321 +

Link to JBrowse

Properties
Property NameValue
Productubiquitin carboxyl-terminal hydrolase 31
Orig transcript idgnl|cribi|Naga_100160g1.4644.mrna
Orig protein idgnl|cribi|Naga_100160g1.4644
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:1752..3321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100160g1gene7560Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7803rna7803-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22884.1cds7782Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7803 ID=rna7803|Name=rna7803|organism=Nannochloropsis gaditana|type=mRNA|length=471bp
ATGACCTACTGGGGGATAATAACGCCCGGAAAGGACTCTAAGCGCAGCGG
CTTGCCTCCTCCAAGCCCTCGGAGAGGAGACGATCTTCCCATTGTCTACA
GTCCGAAAAGAGGACAACCGAGCACACATGACAATCTGATAGGGGGAGAG
ATGACCTCAATGAACCGTCTTTGCAGTCTTTTTCAGAGGTCAGACTCGAA
TTTATCTGAGGCCTCTGACGTGCAAACTTTGCGGAGAGAAAAAAAGTGGC
TTCACGTAGTCCTACGGAAGTTCGAATCATCTTTTCGCGAACAATACGGC
AGACGCATTCTCACTGCGAAAGACATTGCGCCTGTTGAAAAGCAGTATGA
GCGTTACATACACATTAAAAGCAAGCTGGCGACACTCGCATCGATGGAAA
AGAGCGAGGAAATCAGCGAACAGAAGGAAACGATAAAGTCTCGGAATATT
CTGAATACTTCCCACGAGTAA
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protein sequence of rna7803

>rna7803-protein ID=rna7803-protein|Name=rna7803|organism=Nannochloropsis gaditana|type=polypeptide|length=413bp
MAGPQSPAGTRDAREESGAVKGHEDTRGEKGKGSSGRGEGGLQGNGGLSV
AAVGNSPSPTAGTKPKSRAGRCDGGDGLRMGDHIGGGDGGLLRAGNAQGE
KVDETGDVSKDKGLEEPGEKQEPLTGCAEIASASPSSSSPPSGTISSSHT
PPAASPSSLPSSEGLDTSSTSLPRPVRRPSLRLPTPSPSVLDELTLSHCL
DAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSA
RKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDR
RGKRAREGEGSPQTGWSHGRREGMNGGSVSPEILYDLFAVVEHMGASLQQ
GHYKAFVQEGTEGGKEGGREGGRAPAWCVCNDTWVQAVSIEKVLNAQAYL
LFYIRRGWSPKAG
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mRNA from alignment at CM002474.1:1752..3321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7803 ID=rna7803|Name=rna7803|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp|location=Sequence derived from alignment at CM002474.1:1752..3321+ (Nannochloropsis gaditana)
ATGGCGGGTCCCCAGAGCCCGGCGGGAACACGAGACGCacgagaggaaag
cggagcGGTGAAAGGCCACGAAGACAccaggggagaaaaggggaaaggga
gctctgggcgcggagaaggaggactgCAGGGGAACGGAGGTCTctcggtg
gcggcggtgggaaattccccttctcccaccgcAGGCACGAAGCCGAAGAG
CCGGGCAGGACGATgcgatggaggcgacgggCTACGGATGGGGGACCAta
tcggggggggggatggcggctTGTTACGAGCCGGGAATGCACAAGGCGAA
AAGGTGGACGAGACAGGAGACGTCTCCAAGGACAAGGGTTTGGAGGAGCC
AGGGGAGAAACAAGAACCCCTGACGGGGTGCGCTGAAATAGCGtcggcct
ctccttcctcctcttcccctccttccggcaCTATCTCGAGCTCACACACT
CCCCCtgccgcttctccttcctcactgCCCTCTTCAGAAGGTCTTGACac
ctcatccacctccctcccccgccccgtccgccgtccgtccctccgtcttc
cgactccttccccttctgtGCTTGATGAACTTACCCTCTCCCACTGCCTG
GATGCCTACACATCGCGTGAGACGCTCTCTTGTCCATACAAATGCGCATC
CTGCGGCGCAACTTCCTCATCCTGCTCCAAGCAATTGACATTACACCGGC
TGCCCAACGTTTTCATCTTTCATATGAAACGCTTTgacgccttctccgcc
cgcaAAATTGAGAAGTTCGTCCGGTACCCTCCCAAAGGTCTGAATATGGC
CCCTTACATGCACGCGTGGTGCAACGCGGAAatgaggcgggaggggacaa
cggcgaaaaggaaggaagaaagttTGGGGAATGAAAATGGTGGCGACAGG
CGTGGGAAAAGGGCTCgtgaaggggaaggctcCCCTCAAACGGGATGGTC
TCatggacgaagggagggcatgaaCGGCGGATCCGTGAGCCCTGAGATTC
TCTATGACCTGTTTGCAGTCGTAGAGCACATGGGGGCCTCCCTTCAGCAA
GGGCATTACAAAGCATTCGTacaggaagggacagagggagggaaggaagg
agggagggagggagggcgggcaccggCCTGGTGCGTTTGCAACGATACTT
GGGTCCAGGCGGTGAGCATTGAAAAGGTCTTGAACGCGCAAGCTTACCTC
CTGTTTTACATCCGACGGGGTTGGAGCCCAAAGGCAGGCTGAAGGTTACG
AAGGGATACGGAAAGGATAGATCGAGAGGGTGAGCTAGGTTGAAGATGAC
AAACTGTGCTGGCGATGCAGGAACGGAAGGTGTGTGCTTCTTTCGGTGGT
CTTTTGTGAGGGTGgaatgaggatggagggggtcAAGTTGCTGAAGTAGT
GTACCATATTCGACAAACCAGATGTCACTATAGTGAGTGTCTGAAATAGT
GTGAAGCGTTCGACGGGCTAGATGTTACGTAAGGTTAGGAGCTGCAAATG
GAAGTGAATCGGATTACTCTAGGGTCTGTTGGGAAAACGAAGTTCAATCG
AATCGTCTGTGAAAGATAAT
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Coding sequence (CDS) from alignment at CM002474.1:1752..3321+

>rna7803 ID=rna7803|Name=rna7803|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002474.1:1752..3321+ (Nannochloropsis gaditana)
ATGGCGGGTCCCCAGAGCCCGGCGGGAACACGAGACGCacgagaggaaag
cggagcGGTGAAAGGCCACGAAGACAccaggggagaaaaggggaaaggga
gctctgggcgcggagaaggaggactgCAGGGGAACGGAGGTCTctcggtg
gcggcggtgggaaattccccttctcccaccgcAGGCACGAAGCCGAAGAG
CCGGGCAGGACGATgcgatggaggcgacgggCTACGGATGGGGGACCAta
tcggggggggggatggcggctTGTTACGAGCCGGGAATGCACAAGGCGAA
AAGGTGGACGAGACAGGAGACGTCTCCAAGGACAAGGGTTTGGAGGAGCC
AGGGGAGAAACAAGAACCCCTGACGGGGTGCGCTGAAATAGCGtcggcct
ctccttcctcctcttcccctccttccggcaCTATCTCGAGCTCACACACT
CCCCCtgccgcttctccttcctcactgCCCTCTTCAGAAGGTCTTGACac
ctcatccacctccctcccccgccccgtccgccgtccgtccctccgtcttc
cgactccttccccttctgtGCTTGATGAACTTACCCTCTCCCACTGCCTG
GATGCCTACACATCGCGTGAGACGCTCTCTTGTCCATACAAATGCGCATC
CTGCGGCGCAACTTCCTCATCCTGCTCCAAGCAATTGACATTACACCGGC
TGCCCAACGTTTTCATCTTTCATATGAAACGCTTTgacgccttctccgcc
cgcaAAATTGAGAAGTTCGTCCGGTACCCTCCCAAAGGTCTGAATATGGC
CCCTTACATGCACGCGTGGTGCAACGCGGAAatgaggcgggaggggacaa
cggcgaaaaggaaggaagaaagttTGGGGAATGAAAATGGTGGCGACAGG
CGTGGGAAAAGGGCTCgtgaaggggaaggctcCCCTCAAACGGGATGGTC
TCatggacgaagggagggcatgaaCGGCGGATCCGTGAGCCCTGAGATTC
TCTATGACCTGTTTGCAGTCGTAGAGCACATGGGGGCCTCCCTTCAGCAA
GGGCATTACAAAGCATTCGTacaggaagggacagagggagggaaggaagg
agggagggagggagggcgggcaccggCCTGGTGCGTTTGCAACGATACTT
GGGTCCAGGCGGTGAGCATTGAAAAGGTCTTGAACGCGCAAGCTTACCTC
CTGTTTTACATCCGACGGGGTTGGAGCCCAAAGGCAGGCTGA
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Synonyms
Publications