rna7740, rna7740 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7740
Unique Name	rna7740
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2086
Alignment location	CM002473.1:208368..210319 -

Link to JBrowse

Properties


Property Name	Value
Product	Zinc finger, PARP-type
Orig transcript id	gnl\|cribi\|Naga_100102g20.82.mrna
Orig protein id	gnl\|cribi\|Naga_100102g20.82
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:208368..210319 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100102g20	gene7494	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22971.1	cds7719	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7740	rna7740-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:208368..210319-
coding sequence from alignment at CM002473.1:208368..210319-

mRNA sequence

>rna7740 ID=rna7740|Name=rna7740|organism=Nannochloropsis gaditana|type=mRNA|length=2086bp
CTCTTATTCTCCTTCTTTGCCGGTCGCACAATACCTTTGTCAATATTTAT
CGCCGTCAAAGTACTTATCCAGCGCTTTCTCACCCTCGTGGATTTTTGGC
AGAACAAGCGACGGTCATCCATCCCGTTCAACGCTGAATAGGGTCGATGG
GCCGTTCCTAACGCACCCGAAAGGACGCATTGTTTTGGCGGAAATTTTGG
GAGGGGGTGCATTAACTTAAATTTTTCAAGGAAAGATCAAAGACGCTGTG
CGTCTCAGCGCAACTGGTGCTACCACAAGTCTAGTCATCCCGGGGGGAGA
AGAGGGAGCCTGCGATCCTTGCTGTTGAAGAACACGGGGTGCTGGCTGGC
TAGCTATGCAGGCGCCGCCGGACGACTGGGGCCACTGGTTCCCTTTTGTC
CAACACAACCCTGTCCTAGGTGACAAAAAGTCCTGGCGAGATCGCGCCGA
GCTTCTTCGACGACTGGAACGGGATGGCATCATCGTGGCGAAAGGTATTT
TAGATGCAAGGGAGTGCGCCGAGCTGGCAGAAGACATGGGGGGTTGGTTG
AAGCGGCAAGGTATCGACTGTAACGACAACAAAACGTGGGACAAATACAA
CGCCGCAAACCTGCACATGAGCAAAAGTATTCTGGGGATGATGAATACAG
GGCCTGCGTGCTTTTCTAGCGTCGCCCTCAAAGCCCGAAGCTCACCGAAA
GTAGTGGAAATTTTCAAGGTTCTCCACGATGTTCCCTCGGAGGATGATTT
GGTCATGCAGCTGCAAGGTCTCTTCTGGGGCTTTCCGCCTGAGCATTATC
CCGGCGGCTTCATTCCTCCGCTGGAGGGGGCGCCGTCTAACCAGGGTGGT
TACTACCACTGGTCAGAGATGTGGATGCACAGCGACCGAGGCCGCTCCAC
CACCTACCCGGCTCCGCTACAGTGCACTTTAGTGCTGGAAGATGTGTCGC
TATATGATCATGGCTTCGTCTTCCTATCCAAGTCTCACTACTACCACGAC
GAATTTTTCGCCTCCCACCCGCCCGGCACACTCGAGCTAGAGCCCCGTTC
GCTTCTGCCACCCACAACTCCTGTAGCAGCCGGTTCCGCGGCCATGCGAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATTACTGCAGGAAGAGGGA
AAGGACACTTACATTCAGCTTACGTACGAGAATGTCAAATACTTTGAGCA
AAAAGGCTGCCAATGGAAAAAGGTGGTAGCACCCAAAGGCTCCATCATTA
TCTGGGACTCTCGACTCATCCACTCCACGTGTGCTCCCTCCCGTGGTCGC
CCTTTCCCTCGAGCTCGTTTCATCGTCTTTGGCGGCTACGTTCCTAGGGC
AGACTTGACGGAGGAGGAGAAGGCAGAACGGGCGCGGAACTTCCAGCGTT
ACTGTCAGGGAATCGACCATCAAATTTTGCTAGAACTTTGGCAGCGGGGC
CCCCCGGGTCGGCTGCGACGGCTCATGGGCTTGGAGGAGCCGGGGGGAGA
GGGAAGTGTGGGAGGGCTGACGAGCGTGGGGAGCGGCATGAGCGGAGGCA
GCGCCGAAGAGGGAGAGGAAGAAGGAGAGCAAGAGAGGAAGAAGGAAGGG
TGTGGTGGTGTTACAGAAGAGAGGAAATTGATAGGTGGAAGGATACATCA
CCAAGAGGAAGGAGAACGGAAAGAGGAGCAGCAGAAAATGGCCATGATCA
AGCTGAAAGGCCTCGAGGGGGCCTGGAGCTGGAAGGAAAAGGAGGCCGCG
AACGCGTTGCTTGTGATGATGAGGCCAAATAAACAAAAAAGATGAAGGCG
ATATGAGTCAAAAGCAAAAAGCAAACAACCTAGGGCGACACCGTGCGGGT
TACGGACGACGGAGTGAGAGTTAATCGACACAAATAGAAAGGGTTTCATG
GGTGGGGCAGGACGGGATGGGCAATTGGACGAAAAAGAATATCGAAGTCA
AATTTGTCAAGGGCCAGGTGTCGGATGCCTAGAGACGCGCCCATTTTGCG
AGGAAAAAGTAATTTCTTACTTATCCGAAAATGTAAACTCAAGAGGAGGG
ATTCGCACGTTTTGTCTAGGAAGCTGAATTTTACCG

protein sequence of rna7740

>rna7740-protein ID=rna7740-protein|Name=rna7740|organism=Nannochloropsis gaditana|type=polypeptide|length=449bp
MFRVFVSRLRRSFTSGNVFKFGRHSFHRNIQPYFHYNKQVVSGIVSMSLD
AGGCGRKARTPSPHEHHFKDLRIDTTCLFPDQFDAFLSTSDQYQSAEVST
PTTPNATGAGRVNFDETGATTNPSFASTSSGQQYKTACHVVGYAPEGTAS
RCRVCGSGFEPHGLRFGTFFSHAQGFIFLRWHHLPCLRPPSSLEDITTLS
GHCNLSQDDVKVVQGWIDGNGVAPASLPLSPFSAFRSSPSFADSDRENKI
PEWQTLGSINDDLCSSDTSINSNMNGNEWESRPRGIRPGQASPLSPPLVW
PLQDRIVELADTSTLSTPSHSSGCLGVIANQSTSSFIPISSPVESLLIRK
NSERERGAQELSHAGLFSTSPPRSDYMIDRNLPSPREMSRSRGTKFRAET
PIFSLTGKNNLKVGESVELTAQEEMAKAESEMLRQTAKIERHRRQSRTI

mRNA from alignment at CM002473.1:208368..210319-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7740 ID=rna7740|Name=rna7740|organism=Nannochloropsis gaditana|type=mRNA|length=1952bp|location=Sequence derived from alignment at CM002473.1:208368..210319- (Nannochloropsis gaditana)
CCCAGGAGTCACCGCAACTAAAAACTGAGTTCTCGAAGTCTAAATATTCT
TATCAATGTTCTTCTCAGGTGATATAGGCCAGTGGACTAGGATAAACAAC
GGGGCGTGTGTATCGCAGGGGCGTCTCATTAAACCCACAATTGACTTGCT
CATCACGCTGAGGGATCGCACCGGGAGCGGCCGGGAGAGCTCTCGGTAAG
ATTACGCAAAGGGTATTTCCTCATCATCTGGGCATTGACTCTTCATTAAA
GTGTAGACTTAGATAAGAATGCTTGGAATATGGTCTTCCTAAAAAGGGGG
ATACGCCAAGTTTTTAGAAAGTAATGTTCAGGGTTTTTGTCTCACGGTTA
CGCAGGTCTTTCACCTCTGGAAACGTCTTCAAGTTTGGTCGGCACTCTTT
CCACCGGAACATCCAACCATATTTTCATTACAATAAACAGGTTGTTAGCG
GCATTGTCTCCATGTCTCTAGACGCTGGAGGCTGCGGACGAAAGGCTCGG
ACTCCATCACCGCACGAGCATCACTTCAAGGACCTGCGCATCGATACAAC
CTGCCTTTTCCCGGACCAATTCGACGCATTTCTATCCACTTCTGATCAGT
ACCAAAGCGCTGAAGTATCAACTCCTACAACGCCCAACGCTACGGGTGCT
GGCCGGGTAAACTTCGACGAAACAGGCGCAACGACCAATCCGAGCTTCGC
GTCGACGAGCTCGGGGCAACAATACAAGACAGCCTGCCATGTGGTGGGAT
ACGCCCCAGAGGGAACAGCTAGCCGGTGCCGGGTCTGTGGAAGTGGCTTT
GAGCCTCACGGGCTGCGGTTTGGTACGTTTTTTTCCCACGCCCAGGGCTT
CATTTTCCTACGCTGGCATCATTTGCCTTGCCTTCGTCCGCCCTCCAGCC
TAGAGGACATTACGACCCTCTCCGGCCACTGTAATTTGTCGCAAGATGAT
GTTAAGGTGGTGCAAGGCTGGATAGATGGCAATGGTGTCGCACCGGCCTC
CTTGCCTCTGTCCCCTTTTTCCGCTTTTCGAAGTAGCCCATCCTTCGCCG
ACTCGGATCGAGAGAACAAAATACCGGAGTGGCAGACATTAGGGAGTATC
AACGATGATCTGTGCAGCAGCGACACAAGCATCAATAGTAATATGAATGG
AAATGAGTGGGAGAGCCGTCCTCGGGGCATACGGCCCGGCCAAGCCTCGC
CTCTCTCGCCTCCGCTGGTCTGGCCACTTCAAGACCGAATCGTGGAATTA
GCTGACACTTCAACGCTGTCGACACCATCACATTCGAGTGGATGCCTAGG
TGTTATCGCTAATCAAAGTACTAGTTCTTTCATACCCATCTCGTCTCCTG
TTGAAAGTCTATTGATCAGAAAAAACAGCGAGAGAGAAAGAGGGGCACAG
GAATTATCCCATGCCGGGCTTTTCTCTACGTCCCCACCGCGAAGTGACTA
CATGATCGACCGCAACCTTCCCTCCCCACGTGAGATGAGTCGAAGCCGTG
GCACGAAGTTCCGGGCGGAAACTCCCATCTTCAGCCTGACTGGCAAAAAT
AACCTGAAAGTGGGCGAGAGCGTGGAACTGACGGCACAAGAGGAAATGGC
GAAAGCGGAGTCCGAAATGCTTCGACAAACTGCCAAAATCGAAAGGCACC
GAAGGCAGAGCAGAACGATTTGAGAAATCCTCTATCTTGCATGTACTCGA
TGGAAATGAAAGTTTGAATTCGTGCCTAATGTGCCAAATGCGGTACACAT
AAATACAGGAGAGAAATAACACGTGCTTTTGAGAAGCCAGGATATGTTTA
CTGCAAGCTTTCATTGTTCATGCAGCTGAAATGATTAAAATTGCAATAGA
AAAAATTACAAACGAAACAACAAACAACAAACGGAATACTTGCATGGTGT
AAGAAAACGGTAAAATTCAGCTTCCTAGACAAAACGTGCGAATCCCTCCT
CT

Coding sequence (CDS) from alignment at CM002473.1:208368..210319-

>rna7740 ID=rna7740|Name=rna7740|organism=Nannochloropsis gaditana|type=CDS|length=1350bp|location=Sequence derived from alignment at CM002473.1:208368..210319- (Nannochloropsis gaditana)
ATGTTCAGGGTTTTTGTCTCACGGTTACGCAGGTCTTTCACCTCTGGAAA
CGTCTTCAAGTTTGGTCGGCACTCTTTCCACCGGAACATCCAACCATATT
TTCATTACAATAAACAGGTTGTTAGCGGCATTGTCTCCATGTCTCTAGAC
GCTGGAGGCTGCGGACGAAAGGCTCGGACTCCATCACCGCACGAGCATCA
CTTCAAGGACCTGCGCATCGATACAACCTGCCTTTTCCCGGACCAATTCG
ACGCATTTCTATCCACTTCTGATCAGTACCAAAGCGCTGAAGTATCAACT
CCTACAACGCCCAACGCTACGGGTGCTGGCCGGGTAAACTTCGACGAAAC
AGGCGCAACGACCAATCCGAGCTTCGCGTCGACGAGCTCGGGGCAACAAT
ACAAGACAGCCTGCCATGTGGTGGGATACGCCCCAGAGGGAACAGCTAGC
CGGTGCCGGGTCTGTGGAAGTGGCTTTGAGCCTCACGGGCTGCGGTTTGG
TACGTTTTTTTCCCACGCCCAGGGCTTCATTTTCCTACGCTGGCATCATT
TGCCTTGCCTTCGTCCGCCCTCCAGCCTAGAGGACATTACGACCCTCTCC
GGCCACTGTAATTTGTCGCAAGATGATGTTAAGGTGGTGCAAGGCTGGAT
AGATGGCAATGGTGTCGCACCGGCCTCCTTGCCTCTGTCCCCTTTTTCCG
CTTTTCGAAGTAGCCCATCCTTCGCCGACTCGGATCGAGAGAACAAAATA
CCGGAGTGGCAGACATTAGGGAGTATCAACGATGATCTGTGCAGCAGCGA
CACAAGCATCAATAGTAATATGAATGGAAATGAGTGGGAGAGCCGTCCTC
GGGGCATACGGCCCGGCCAAGCCTCGCCTCTCTCGCCTCCGCTGGTCTGG
CCACTTCAAGACCGAATCGTGGAATTAGCTGACACTTCAACGCTGTCGAC
ACCATCACATTCGAGTGGATGCCTAGGTGTTATCGCTAATCAAAGTACTA
GTTCTTTCATACCCATCTCGTCTCCTGTTGAAAGTCTATTGATCAGAAAA
AACAGCGAGAGAGAAAGAGGGGCACAGGAATTATCCCATGCCGGGCTTTT
CTCTACGTCCCCACCGCGAAGTGACTACATGATCGACCGCAACCTTCCCT
CCCCACGTGAGATGAGTCGAAGCCGTGGCACGAAGTTCCGGGCGGAAACT
CCCATCTTCAGCCTGACTGGCAAAAATAACCTGAAAGTGGGCGAGAGCGT
GGAACTGACGGCACAAGAGGAAATGGCGAAAGCGGAGTCCGAAATGCTTC
GACAAACTGCCAAAATCGAAAGGCACCGAAGGCAGAGCAGAACGATTTGA

Synonyms

Publications