rna7729, rna7729 (mRNA) Nannochloropsis gaditana

Overview
Namerna7729
Unique Namerna7729
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2449
Alignment locationCM002473.1:182188..182688 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100102g6.73.mrna
Orig protein idgnl|cribi|Naga_100102g6.73
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:182188..182688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100102g6gene7483Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7729rna7729-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22962.1cds7708Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7729 ID=rna7729|Name=rna7729|organism=Nannochloropsis gaditana|type=mRNA|length=2449bp
CTCGGCGTGAAGCTTTTCCATTGTGCGTATTTTTCCTCTTTAAGAGCCAT
TGCAAAAACGCACGACCTTTTCATAAAATATAGCAATATACCGTAAAGAA
CTTAAAACAGAGAGCAAACACGGGAAATCTCAGGGAAATTCAGCTCGGAA
GTCCTCGGGAGTTGAAGCGGCGAGAGCAGAGTTCAATCTGCGCCCAGTTT
GCAGCCGGTCTATCCCCCTATTTGTCTGGGCAGAATCCCCGAGTAACATG
AAAGCAAGCAAATTTTCTCGTTGGGCAGAAGCACCCTATGACTTCCTATG
TGCACCCCCAAACACCGCTTCCCTTCTATTCTGTGGAGCATGCCTCGCAC
TCTCGGCCATCAAGTCCATATAATGCCTCATATGTAGCAGGTAAGCCTGA
ATTGCATCTGAATGAAGGCCCCCCGCAGTTCAAAAGTGCCATGGAGCTCG
TGCAACGATTACAAGAGCAACTCAAGACAGTTCGGCTCGACAAAGGACGG
CTTGAGGAGCGATGCTTTGCTCTGGAGCAAGAAGTGGGTGAGATCAGTCA
GCATTTGCTGGCTTCAAAGCCTGTAAGAACGAACAAGTTGTCGCCATCGT
TCGGGTCTCCCACATTTGCTGGCAGCGCGTACCACCCTAAAATTGAAAAT
GGACCTTATTTGGAAAATCCGTCGGCAAAAGAATGGGCCTCCAAGGATAG
TCTGCGCGCGCGACTCGTCTCAGTGGAAGCGCAGCTCGCGAGTCGCGACA
AGGAAGTCTTGTCACTGCAGAAGCGTTTGGATAAGGCCCTGAGGGCCCTG
GCGGCGGCAGAGAGCAAGCACTTGGAGGACCTGTCGCGGCTCTTCCGGGG
GTCGGCGCGTACGGGGGAGAACAACGGGGAGCGTGCCAAATGGAAACGGG
AAGTGAAGCTGGCGCTGCGGGAGGCCGTGCGGTGGAGGTGTGAGGTCGAG
CGGGTGACGGGGCGGGCGGGGGGGGAAGAGGGGGGCGCGGACGAGGGAGA
GGGAGGGGGAGCCCCGACTGTTTTGAAAGTGACGGGGCTGGGGGTGAAAC
GGGCGAGAAGAGAGGGAAAGAGGGTCACTCCAGCGTTGCAGGAGAGGATC
GCGAAGCAGGCAGGGGCGATGGAGTCGGAGAAGAGGGAAGTGAGAGCATT
GGAGGCGCGGTTGGAGCGGGCCCTCCGTCAGAAAGAGAAGTACAAAGAGC
GCTTAGTTGCCTCGCGTGGAGCCGCGTTAGCGCTAAAGCAGGAGCTGGCG
TCTCTGGCCGGGCGGCCCGAGGTCCTGGAGGACGACTTGCGCGGGTCGGT
CGGGGGGGCGCCTACGCGGGGACAGGGAGGAGGGGCCTGCTTAGCGGGCG
GTGAAAGAGCCTTTCATGGAGGGAGAGGGGAGGGAGGGGAGTGGGATGGA
GGGAAGGGGGGGAACCGCGTGGGTGGCAAGCAGGGGAGAGGGCAGGAAGG
GCGAGAAAGTGGACGCATCTCTGAGACCCAGCAGCTACACAACAGGCGTC
GTGGCGGGCGGTTATTACGGGCCGAAGCTGACGCAGAAAACCAGGACGCA
AATGGAGAAAGCCAGAGGGACTTGGACGCGTGCTCCAGGCGCCGCCAAAA
GAAACCGCACCGCAAGCGTCAGGACCCGCCTGTCGGAAACACGGAGCCCA
TACCCTTGACGCCATTGGCGATCAAGCCGCAGGCATGGGAAATCAATTTT
CCACCAGGCCAGGCGGGTTTCGAGATCTCTCCTGTCCTCCACCGGTTCCA
GAAGTACGGGCGAACGGAAGGAAGAGGAGGGCAGAAATAATGTAAATTAA
CCAAAGTAGATCCGAAAGACGACTACAAAATGGAAATACCCCAAAGCATT
TGCGCATATATTTTTAGGGCTACAAGTGTGCGTGCTTTAATGTGCATTCA
TGCGCTTGGCTGACTTTGCTGAGTTTGCCTCTCCTCCGCATCCTCCAGGG
AGTAGTCCCAGTCTCCCTCCGCCCACACGAACTTCTCCGGCAACCCGCAC
TCCTTGAAAAAAGCCTCCAAAGATCGTTGCACCAGGTTCCGGCAGTCACC
CCCTGTAGTTCGGAGCTCCAGTGATACCTCTTGAAAGCGCCCGTCTTCCT
TGGTCTTGAGGAAAAACCGGTAGGAATGCAGCCCCGCGCGCGGTGGAGCG
GTATCCTTGTCGCGGACATCGTCCAAGAACGCTTGAAAGCGACTGAAGGA
TTCCTGATTGACGTCTTTCTGTTTTGGGTAATAAGTGAAGAGGTCTGGAT
GCACCCTCAAGAAAAATTTGCGGAGTGTTTGCTGCAGGAGAGGATGCGCT
CCGCCGTCTCCATCGGCCTGATGCCGCCACCGGGGGGCCAACCCTGCACG
CTTTCGCCCGCCGCGCTGCCGAGCAGTGGAAATGGCCTGGGAGGTCATTA
TTGACGGCTGACATGATACTCCCAGCCAAGAGAAGGGGAGGGGCAGGCA
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protein sequence of rna7729

>rna7729-protein ID=rna7729-protein|Name=rna7729|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MTSQAISTARQRGGRKRAGLAPRWRHQADGDGGAHPLLQQTLRKFFLRVH
PDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTK
EDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDWDYS
LEDAEERQTQQSQPSA
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mRNA from alignment at CM002473.1:182188..182688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7729 ID=rna7729|Name=rna7729|organism=Nannochloropsis gaditana|type=mRNA|length=501bp|location=Sequence derived from alignment at CM002473.1:182188..182688+ (Nannochloropsis gaditana)
ATGACCTCCCAGGCCATTTCCACTGCTCGGCAGCGCGGCGGGCGAAAGCG
TGCAGGGTTGGCCCCCCGGTGGCGGCATCAGGCCGATGGAGACGGCGGAG
CGCATCCTCTCCTGCAGCAAACACTCCGCAAATTTTTCTTGAGGGTGCAT
CCAGACCTCTTCACTTATTACCCAAAACAGAAAGACGTCAATCAGGAATC
CTTCAGTCGCTTTCAAGCGTTCTTGGACGATGTCCGCGACAAGGATACCG
CTCCACCGCGCGCGGGGCTGCATTCCTACCGGTTTTTCCTCAAGACCAAG
GAAGACGGGCGCTTTCAAGAGGTATCACTGGAGCTCCGAACTACAGGGGG
TGACTGCCGGAACCTGGTGCAACGATCTTTGGAGGCTTTTTTCAAGGAGT
GCGGGTTGCCGGAGAAGTTCGtgtgggcggagggagactgGGACTACTCC
ctggaggatgcggaggagaggcaaaCTCAGCAAAGTCAGCCAAGCGCATG
A
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Coding sequence (CDS) from alignment at CM002473.1:182188..182688+

>rna7729 ID=rna7729|Name=rna7729|organism=Nannochloropsis gaditana|type=CDS|length=501bp|location=Sequence derived from alignment at CM002473.1:182188..182688+ (Nannochloropsis gaditana)
ATGACCTCCCAGGCCATTTCCACTGCTCGGCAGCGCGGCGGGCGAAAGCG
TGCAGGGTTGGCCCCCCGGTGGCGGCATCAGGCCGATGGAGACGGCGGAG
CGCATCCTCTCCTGCAGCAAACACTCCGCAAATTTTTCTTGAGGGTGCAT
CCAGACCTCTTCACTTATTACCCAAAACAGAAAGACGTCAATCAGGAATC
CTTCAGTCGCTTTCAAGCGTTCTTGGACGATGTCCGCGACAAGGATACCG
CTCCACCGCGCGCGGGGCTGCATTCCTACCGGTTTTTCCTCAAGACCAAG
GAAGACGGGCGCTTTCAAGAGGTATCACTGGAGCTCCGAACTACAGGGGG
TGACTGCCGGAACCTGGTGCAACGATCTTTGGAGGCTTTTTTCAAGGAGT
GCGGGTTGCCGGAGAAGTTCGtgtgggcggagggagactgGGACTACTCC
ctggaggatgcggaggagaggcaaaCTCAGCAAAGTCAGCCAAGCGCATG
A
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Synonyms
Publications