EWM22962.1, cds7708 (CDS) Nannochloropsis gaditana

Overview
NameEWM22962.1
Unique Namecds7708
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:182188..182688 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22962.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100102g6.73.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:182188..182688 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027986TCAIM
IPR028031DUF4460
Homology
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|585103695|gb|EWM22962.1| (hypothetical protein Naga_100102g6 [Nannochloropsis gaditana])

HSP 1 Score: 342.813 bits (878), Expect = 2.381e-119
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MTSQAISTARQRGGRKRAGLAPRWRHQADGDGGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDWDYSLEDAEERQTQQSQPSA 166
            MTSQAISTARQRGGRKRAGLAPRWRHQADGDGGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDWDYSLEDAEERQTQQSQPSA
Sbjct:    1 MTSQAISTARQRGGRKRAGLAPRWRHQADGDGGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDWDYSLEDAEERQTQQSQPSA 166          
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|568028568|gb|ETM02507.1| (hypothetical protein L917_01046, partial [Phytophthora parasitica])

HSP 1 Score: 124.79 bits (312), Expect = 8.591e-33
Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = 0
Query:   25 RHQADGDGGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDWDYSL 151
            R      GG  P+L+ TLRK +LR HPDLF  YP+Q+  N+ES+      LD +   +  PP   L    FFLKT  +G F+EV L+LRTTGG C  LV+ +L  FF ECGLP+ F W EG W  ++
Sbjct:   76 RKMKSQKGGKVPMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQVFQWGEGSWGKAV 201          
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|953490929|emb|CEG46112.1| (T-cell activation inhibitor, mitochondrial, partial [Plasmopara halstedii])

HSP 1 Score: 124.02 bits (310), Expect = 1.151e-32
Identity = 60/123 (48.78%), Postives = 73/123 (59.35%), Query Frame = 0
Query:   25 RHQADGDGGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDW 147
            R   +   G  P+L++TLRK +LR HPDLF  YP Q+  N+ES+      LD +   +  PP   L S  FFLKT  +G FQEV L LRTTGG C  LV+ +L  FF EC LPE F W EG W
Sbjct:   70 RKMKNEKHGKIPMLKETLRKLYLRTHPDLFGRYPNQQRANEESYKELLGILDAIEKHNEFPPAKTL-SLPFFLKTPVEGEFQEVKLRLRTTGGACNTLVEEALGRFFGECSLPEVFQWGEGSW 191          
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|301121402|ref|XP_002908428.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103459|gb|EEY61511.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 124.79 bits (312), Expect = 3.558e-32
Identity = 59/116 (50.86%), Postives = 73/116 (62.93%), Query Frame = 0
Query:   32 GGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDW 147
            GG  P+L+ TLRK +LR HPDLF  YP+Q+  N+ES+      LD +   +  PP   L    FFLKT  +G F+EV L+LRTTGG C  LV+ +L  FF ECGLPE F W EG W
Sbjct:    6 GGKVPMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPEVFQWGEGSW 120          
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|301121406|ref|XP_002908430.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103461|gb|EEY61513.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 125.176 bits (313), Expect = 1.222e-31
Identity = 59/116 (50.86%), Postives = 73/116 (62.93%), Query Frame = 0
Query:   32 GGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDW 147
            GG  P+L+ TLRK +LR HPDLF  YP+Q+  N+ES+      LD +   +  PP   L    FFLKT  +G F+EV L+LRTTGG C  LV+ +L  FF ECGLPE F W EG W
Sbjct:   47 GGKVPMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKYNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPEVFQWGEGSW 161          
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|568028562|gb|ETM02501.1| (hypothetical protein L917_01047 [Phytophthora parasitica])

HSP 1 Score: 124.02 bits (310), Expect = 1.358e-31
Identity = 58/116 (50.00%), Postives = 73/116 (62.93%), Query Frame = 0
Query:   32 GGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDW 147
            GG  P+L+ TLRK +LR HPDLF  YP+Q+  N+ES+      LD +   +  PP   L    FFLKT  +G F+EV L+LRTTGG C  LV+ +L  FF ECGLP+ F W EG W
Sbjct:    6 GGKVPMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQVFQWGEGSW 120          
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|567971053|gb|ETK96068.1| (hypothetical protein L915_01092 [Phytophthora parasitica] >gi|567999403|gb|ETL49443.1| hypothetical protein L916_01076 [Phytophthora parasitica])

HSP 1 Score: 123.635 bits (309), Expect = 2.015e-31
Identity = 58/116 (50.00%), Postives = 73/116 (62.93%), Query Frame = 0
Query:   32 GGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDW 147
            GG  P+L+ TLRK +LR HPDLF  YP+Q+  N+ES+      LD +   +  PP   L    FFLKT  +G F+EV L+LRTTGG C  LV+ +L  FF ECGLP+ F W EG W
Sbjct:    6 GGKVPMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQVFRWGEGSW 120          
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|1214699917|gb|OWZ12611.1| (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 125.176 bits (313), Expect = 2.229e-31
Identity = 57/120 (47.50%), Postives = 75/120 (62.50%), Query Frame = 0
Query:   32 GGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDWDYSL 151
            GG  P+L+ TLRK ++R HPDLF  YP+Q+  N+ES+      LD +   +  PP   L    FFLKT  +G F+EV L+LRTTGG C  LV+ +L  FF ECGLP+ F W EG W  ++
Sbjct:   78 GGKVPMLKDTLRKLYMRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGQFFGECGLPQAFQWGEGSWGKAV 196          
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|568028564|gb|ETM02503.1| (hypothetical protein L917_01049, partial [Phytophthora parasitica])

HSP 1 Score: 123.635 bits (309), Expect = 2.362e-31
Identity = 58/116 (50.00%), Postives = 73/116 (62.93%), Query Frame = 0
Query:   32 GGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDW 147
            GG  P+L+ TLRK +LR HPDLF  YP+Q+  N+ES+      LD +   +  PP   L    FFLKT  +G F+EV L+LRTTGG C  LV+ +L  FF ECGLP+ F W EG W
Sbjct:   15 GGKVPMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQVFQWGEGSW 129          
BLAST of EWM22962.1 vs. NCBI_GenBank
Match: gi|567971055|gb|ETK96070.1| (hypothetical protein L915_01094, partial [Phytophthora parasitica])

HSP 1 Score: 123.635 bits (309), Expect = 2.425e-31
Identity = 58/116 (50.00%), Postives = 73/116 (62.93%), Query Frame = 0
Query:   32 GGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDW 147
            GG  P+L+ TLRK +LR HPDLF  YP+Q+  N+ES+      LD +   +  PP   L    FFLKT  +G F+EV L+LRTTGG C  LV+ +L  FF ECGLP+ F W EG W
Sbjct:   23 GGKVPMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQVFQWGEGSW 137          
The following BLAST results are available for this feature:
BLAST of EWM22962.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103695|gb|EWM22962.1|2.381e-119100.00hypothetical protein Naga_100102g6 [Nannochloropsi... [more]
gi|568028568|gb|ETM02507.1|8.591e-3346.46hypothetical protein L917_01046, partial [Phytopht... [more]
gi|953490929|emb|CEG46112.1|1.151e-3248.78T-cell activation inhibitor, mitochondrial, partia... [more]
gi|301121402|ref|XP_002908428.1|3.558e-3250.86conserved hypothetical protein [Phytophthora infes... [more]
gi|301121406|ref|XP_002908430.1|1.222e-3150.86conserved hypothetical protein [Phytophthora infes... [more]
gi|568028562|gb|ETM02501.1|1.358e-3150.00hypothetical protein L917_01047 [Phytophthora para... [more]
gi|567971053|gb|ETK96068.1|2.015e-3150.00hypothetical protein L915_01092 [Phytophthora para... [more]
gi|1214699917|gb|OWZ12611.1|2.229e-3147.50putative mitochondrial protein [Phytophthora megak... [more]
gi|568028564|gb|ETM02503.1|2.362e-3150.00hypothetical protein L917_01049, partial [Phytopht... [more]
gi|567971055|gb|ETK96070.1|2.425e-3150.00hypothetical protein L915_01094, partial [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7729rna7729Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications