EWM23011.1, cds7662 (CDS) Nannochloropsis gaditana

Overview
NameEWM23011.1
Unique Namecds7662
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:50672..50868 +
Alignment locationCM002473.1:51229..51376 +
Alignment locationCM002473.1:51524..51772 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23011.1
Producttransmembrane protein
Orig transcript idgnl|cribi|Naga_100687g1.9506.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:50672..50868 +
CM002473.1supercontigCM002473.1:51229..51376 +
CM002473.1supercontigCM002473.1:51524..51772 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009305DUF962
Homology
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|585103795|gb|EWM23011.1| (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 399.438 bits (1025), Expect = 9.271e-141
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query:    1 MGSNAKGKTSFLGNVLTPSFYLVLLTALTTSYHYLSSHHAEVDSYLGGPRVRSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETVGELGRRMLG 197
            MGSNAKGKTSFLGNVLTPSFYLVLLTALTTSYHYLSSHHAEVDSYLGGPRVRSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETVGELGRRMLG
Sbjct:    1 MGSNAKGKTSFLGNVLTPSFYLVLLTALTTSYHYLSSHHAEVDSYLGGPRVRSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETVGELGRRMLG 197          
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|514700880|ref|XP_004998008.1| (hypothetical protein PTSG_11825 [Salpingoeca rosetta] >gi|326433482|gb|EGD79052.1| hypothetical protein PTSG_11825 [Salpingoeca rosetta])

HSP 1 Score: 98.9821 bits (245), Expect = 3.462e-22
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 0
Query:   52 RSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETVGEL 191
            + ++ F  FY   Y+E+H D   R LH  GT++VL   A+ P   V+  +A VV      L     +GA E A M+  +      L RS+   L+ +L+GY  AW+GHFF E NKPATF Y  FS M DF M +  + ++
Sbjct:   76 KPYKTFMDFYP-YYQEEHTDKTCRLLHIIGTSIVLTIMAASPSTFVSMALAFVVAYACCGLFAFMPNGAAEAAVMVTVFFSTHYFLKRSIKLALVVMLVGYAFAWVGHFFFEQNKPATFIYPSFSLMSDFFMTFRVITQV 214          
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|167535617|ref|XP_001749482.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163772110|gb|EDQ85767.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 88.9669 bits (219), Expect = 3.364e-18
Identity = 52/134 (38.81%), Postives = 71/134 (52.99%), Query Frame = 0
Query:   51 VRSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYA-ASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRM 183
            ++ +  F  FY   Y  +H D   R LH  GT+L+ A    S P+  VA  +A  VG     L      G +EG  M+ T+L+  R +  +    L  +L+GY  AW+GHFF E N+PATF Y  FS MGD+RM
Sbjct:  102 LKPYTTFTEFYTH-YASEHRDHTCRLLHIVGTSLITATVLISSPVTFVAMGLAGAVGYIACGLLAAAPSGIVEGVLMIGTFLLAHRIMTGNYKMALFVVLVGYSFAWVGHFFFEMNRPATFIYPSFSLMGDYRM 234          
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|569357195|gb|ETO06670.1| (hypothetical protein RFI_30722 [Reticulomyxa filosa])

HSP 1 Score: 80.1073 bits (196), Expect = 1.680e-14
Identity = 48/140 (34.29%), Postives = 69/140 (49.29%), Query Frame = 0
Query:   52 RSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMW---WETV 188
            + + NF  F+     E       RY H  GTT+V    A  P  +++    ++ G   + +    + GA E A M    L+    +L+     LL  L+GYGCAW+GHF  E NKPATF Y  FS M D+++W   W+ V
Sbjct:   71 KPYGNFSDFWPYYMTEHSTLICQRY-HIVGTTIVATIFAISPQTMISVGNGMLAGYLSFPIFRGMEFGAAEAAVMCAIALICGH-MLKCKKYILLCALVGYGCAWVGHFVYEHNKPATFIYPSFSLMSDWKLWALFWKKV 208          
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|1061474084|gb|ODM92362.1| (hypothetical protein Ocin01_14319 [Orchesella cincta])

HSP 1 Score: 75.485 bits (184), Expect = 2.990e-14
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0
Query:  123 GAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETVGELGRRML 196
             + M+L Y  LS +   +L   LL L+ GYG AW+GHFF E NKPATF + ++SFMGDF +WWE +   GRR  
Sbjct:   49 NSIMILLYAFLSTSP-HTLPLILLALVQGYGLAWIGHFFFEKNKPATFNHPIYSFMGDFCLWWEVIS--GRRQF 119          
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|1069899619|ref|XP_018265867.1| (hypothetical protein I303_02243 [Kwoniella dejecticola CBS 10117] >gi|1039714161|gb|OBR88025.1| hypothetical protein I303_02243 [Kwoniella dejecticola CBS 10117])

HSP 1 Score: 76.2554 bits (186), Expect = 5.167e-14
Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = 0
Query:   54 FENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASE-----PLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRAL-LRSLSRPLLPLLLG-YGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETV 188
            F++F++FY  +Y  +HA    R LH  GT++ LA  A       P LL +A  ++     ++ L       +L    +L  +   ++ L L  + R LL  ++G Y  AW+GHFF+E N+PATF Y V+S  GD +MWWE V
Sbjct:   24 FQSFQSFYP-LYLGEHAKPLTRRLHLAGTSIALASFARSTLSLVPNLLASAAKSLPASQGIHALHNKGFIVSLGLDVILAKWSYDTQFLELEGVGRWLLGGVVGAYAFAWIGHFFIEKNRPATFKYPVWSLRGDLKMWWEVV 164          
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|918235382|ref|WP_052367354.1| (DUF962 family protein [Algiphilus aromaticivorans])

HSP 1 Score: 73.559 bits (179), Expect = 8.923e-14
Identity = 49/139 (35.25%), Postives = 66/139 (47.48%), Query Frame = 0
Query:   53 SFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLP--LLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETVG 189
            SF +F+ FY   Y E+H++  NR LHF GT+L L              +  VVG+  ++L                                L+P  L++GY  AW+GHFF E NKPATF Y   S+ GD+RMWWET+ 
Sbjct:    7 SFRDFDEFYA-YYLEEHSNRTNRRLHFVGTSLGL--------------LLFVVGIVTFQLW-------------------------------LIPAALVVGYAFAWVGHFFFEQNKPATFKYPWQSYKGDWRMWWETLA 99          
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|1183503671|gb|ORZ27269.1| (hypothetical protein BCR41DRAFT_331934 [Lobosporangium transversale])

HSP 1 Score: 73.9442 bits (180), Expect = 1.211e-13
Identity = 47/139 (33.81%), Postives = 65/139 (46.76%), Query Frame = 0
Query:   50 RVRSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETV 188
            +V  + +FE FY   Y  +H +  NR LH F TT V+A                                       +L YLV++R     L    + LL GYG AW+GHF  E NKPATF + ++SFMGD++MW+E +
Sbjct:   21 KVGGYSSFEEFYP-YYLSEHCNPINRRLHLFATTNVVA---------------------------------------ILGYLVMTR----QLRFWWVTLLQGYGLAWVGHFIFEKNKPATFKHPIYSFMGDWKMWYEVI 115          
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|1154849157|ref|WP_078756695.1| (DUF962 domain-containing protein [Lysobacter spongiicola] >gi|1152122788|emb|SJZ53871.1| hypothetical protein SAMN02745674_00009 [Lysobacter spongiicola DSM 21749])

HSP 1 Score: 72.0182 bits (175), Expect = 4.235e-13
Identity = 49/141 (34.75%), Postives = 68/141 (48.23%), Query Frame = 0
Query:   48 GPRVRSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETV 188
            G R R+F  F  FY      +H    +R LHF GTTLVL       +L+VAA                             T+ +L+ AL+++           YG AW+GHFF E N+PATF Y ++S +GD+RMWW+T+
Sbjct:    4 GKRFRTFREFYPFYL----SEHGHPVSRRLHFVGTTLVL-------VLVVAAISTQ-------------------------TWWLLAVALVQA-----------YGFAWIGHFFFEHNRPATFKYPLYSLVGDWRMWWDTL 97          
BLAST of EWM23011.1 vs. NCBI_GenBank
Match: gi|829196603|ref|XP_001026158.2| (transmembrane protein [Tetrahymena thermophila SB210] >gi|586725703|gb|EAS05913.2| transmembrane protein (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 72.0182 bits (175), Expect = 4.402e-13
Identity = 46/135 (34.07%), Postives = 64/135 (47.41%), Query Frame = 0
Query:   52 RSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWE 186
            + + NF+ FY   Y  QH++  NR LH+ GTT+                                        +M+L   V+S  L +    PL+ ++ GY  AW+GHFF E NKPATF Y V SFMGDF+MW++
Sbjct:    9 KIYTNFQDFYP-FYLSQHSNIINRRLHYIGTTI----------------------------------------SMML--FVISILLTQYQYLPLV-IVSGYAFAWVGHFFFEKNKPATFKYPVMSFMGDFKMWYQ 99          
The following BLAST results are available for this feature:
BLAST of EWM23011.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103795|gb|EWM23011.1|9.271e-141100.00transmembrane protein [Nannochloropsis gaditana][more]
gi|514700880|ref|XP_004998008.1|3.462e-2237.86hypothetical protein PTSG_11825 [Salpingoeca roset... [more]
gi|167535617|ref|XP_001749482.1|3.364e-1838.81hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|569357195|gb|ETO06670.1|1.680e-1434.29hypothetical protein RFI_30722 [Reticulomyxa filos... [more]
gi|1061474084|gb|ODM92362.1|2.990e-1450.00hypothetical protein Ocin01_14319 [Orchesella cinc... [more]
gi|1069899619|ref|XP_018265867.1|5.167e-1435.92hypothetical protein I303_02243 [Kwoniella dejecti... [more]
gi|918235382|ref|WP_052367354.1|8.923e-1435.25DUF962 family protein [Algiphilus aromaticivorans][more]
gi|1183503671|gb|ORZ27269.1|1.211e-1333.81hypothetical protein BCR41DRAFT_331934 [Lobosporan... [more]
gi|1154849157|ref|WP_078756695.1|4.235e-1334.75DUF962 domain-containing protein [Lysobacter spong... [more]
gi|829196603|ref|XP_001026158.2|4.402e-1334.07transmembrane protein [Tetrahymena thermophila SB2... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7682rna7682Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications