rna7647, rna7647 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7647
Unique Name	rna7647
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	959
Alignment location	CM002472.1:466452..468494 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100570g2.9714.mrna
Orig protein id	gnl\|cribi\|Naga_100570g2.9714
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:466452..468494 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100570g2	gene7406	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7647	rna7647-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23045.1	cds7627	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:466452..468494+
coding sequence from alignment at CM002472.1:466452..468494+

mRNA sequence

>rna7647 ID=rna7647|Name=rna7647|organism=Nannochloropsis gaditana|type=mRNA|length=959bp
CCGACTCACCCGCGGTTGTGCCTTCACTTTATCATAGTCCAGGTGTGACA
CGTTGATGCGTGAGGTTGTAGCCCCACGACATGCGTCACCTGTTGTATCT
CTCTTGTGCTTTGCCTCATGAACCTTCCTCCCCTCGACTCCTCCTCCTCC
TTCTCCTCCTCCTCCTCCTCCTTTTTCCCACCTTCCCTCATTCCTTGTCC
TCTTCTCCTCACTCATCTCCGCGAAATATTCCTTCTCCTGAAGCATAGCG
TTCCCTCCCCACCTTCCTCCCGCCAACCAGCCAAGCGTGCGCTCTGGTTT
CCACTTTTTACCCTCAACTCACCCTCGGGAGAACGTCGAGGCCTCTGACC
ACCTTCCTCTCGCTTGCACGCTGTAGCCCACCTACATCTGTCCACCTCCT
CCACCAAATTCTCTTCATTCCTTCAAATATCCCAAGCACATTGCCGCACG
GCCTAGGCTACGCGTATCTGCAGCACCTGTTTTCTGCCGCTATCCCCTCC
TTATCTCCTCTTCATGTCTTTGATCGGATTTAAGCTCTTCATCGGTAACT
TGTCCAAGGAAACGCACGACACTGGGCTCGAGAAATATTTCAAGGACGCG
ATAGGCGGAGAAATAGTCTGGGCACAGGTTTGCAAGGACCGAAACACAGG
CGAAAGTAAACGGTATGGCTTCATCACCTTTAAAGACGAGGCTGACGGGA
AGCGGGCTATTGAGGAGCTGCACGAGACCGAACTCGACGGGTCCAAGATA
ACGGTGGATCGTAGCACGCAAGGCATGATTGAAAAAGATGGCGGGGGTCG
AGGGGCGGAGGACGAGAACGTCCGGCTCTTTGTGGGCGGTCTCCCCGACA
ACTGTGTCGAGGAGGATCTGATGGAGTGAGTGGGAGGGGAGGTGGGGTTG
AAATCCTGCCTGTTGCCCCATGCGTACGAAGCTCGCTCTTGTGGCTGCCT
GACTTTTTC

protein sequence of rna7647

>rna7647-protein ID=rna7647-protein|Name=rna7647|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MPSMWSTPGPRRPKLSIIVLGIFFLPSVQGFLHPPLPALLQISYPLSAGR
SSSSSGGQQAPTEHVNQQKRRKQPLGPEIGSQSDEEKGKAQANADSPLSP
SNPPDRSSPALSPSAAARLERLPDDTEERIEVVRVPDFEEMLAWAIRMDA
RVERRRIAGLGGLVAEPPSPQVDLTKRRPLSKRDEDKMNTVIRMLSQRAE
SKRVFYPNEMEELREALRDMESLMKDDAEHLKKAQQDALILNKAGRAKSR
FQKKREVMIEETGDFDPIYGSKEVRDQIYLYLWSLVKREPRLLVTPWSEG
EEEEGKDGRGEQEGD

mRNA from alignment at CM002472.1:466452..468494+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7647 ID=rna7647|Name=rna7647|organism=Nannochloropsis gaditana|type=mRNA|length=2043bp|location=Sequence derived from alignment at CM002472.1:466452..468494+ (Nannochloropsis gaditana)
CCGCAAAggcacgcctcctccacttttgtCCGCGTGGATCGACAGGGTAA
GAATTGCATCGTGCTGTGTAGAGAAAGGCTGACGactcctttcctttgtt
tCCTGGCTTTTCACACAGTGTGGCAAGGAGACGTTGGAGTTACGCTAGTT
GCACAAGCAGCATGCCTTCAATGTGGTCAACACCAGGTCCGAGAAGACCG
AAGCTCAGCATCATCGTCCTGGGCATatttttccttccgtccGTCCAGGG
CTTCCTtcatccacctctccccgccttgctTCAAATTTCTTATCCGCTGT
CTGCcggtcgctcctcctcctcctcgggcggTCAGCAGGCTCCCACCGAA
CATGTAAATCAACAAAAGCGGCGAAAACAGCCATTAGGACCAGAGATAGG
ATCCCAGTCGgatgaagagaaaggaaaagcacaAGCCAATGCTGACagcc
ccctctctccctcgaaCCCTCCCGaccgctcctcccccgccctctcgcCT
TCGGCCGCGGCTCGTCTAGAGCGCTTGCCCGACGACACGGAAGAAAGGAT
CGAGGTGGTGCGTGTGCCCGACTTTGAGGGTACGTGCgccatcctttctc
ctcctcacgtgTTGCTGCTGAAAATTCCGGTTGGTTATgtgccttttctc
tctcttcttttcaTGCCCCCTGCGCACAGAAATGCTTGCCTGGGCGATTA
GGATGGATGCGCGCGTGGAACGCCGGCGTATCGCGGGCCTAGGTAAGCTA
CAAACAGcctgcttttcccttccttatGCCAacttcctctgccctcccct
acctcgccgccgtcgtcctcacgcgcgtcctccccgaacCCACAGGCGGC
CTGGTGGcagagcctccttctccccaagTAGACCTGACCAAGAGGCGGCC
GCTCTCAAAGAGGGATGAAGATAAAATGAACACCGTCATAAGAATGCTTT
CCCAGTAGGTGCCCCTGTTCCGCCACCCATGCCCCCAGAtcgccaccctc
tctcccctcggcCTCCTGATGTGCACGATACCCCTCAGCACGTGCATGGG
CCACACCTCTCCTCATCAACGCACTTTATGCTAGGGCTCTCACATTCTCG
ATTCCCCCTGTCTCCTTAGGCGCGCGGAGAGCAAGCGTGTTTTCTACCCG
AatgagatggaggagctTCGTGAGGTTcgtgtccttccccttttcccctc
cctccgccccgaccGAGCAAGAAGTGCCCTGGCGAGCTTtgacctccgcc
tccctcctctctccttcccttcccaatCCTAGGCGCTCCGGGACATGGAG
TCGTTGATGAAGGACGATGCCGAGCACCTCAAGAAGGCGCAACAAGtgag
ctgagggagggagggagggaggagtcaaAGCGACGtgtcattccctcctc
ccggtaGCCCTCCATCCCAACCTGTCCCTTCTCCGTgtatcctccccttc
ctccttccctccctccctgcccccaccaGGACGCACTCATCCTCAACAAG
GCTGGGAGAGCCAAGAGCCGCTTCcagaagaagcgggaggtgaTGATCGA
GGAGACCGGGGACTTCGATCCCATCTACGGGTAagtgcctcccctccccc
tccttccccgcccccaccatccTGTCGCTCCGACCCCTGCGGTTTGGTCG
GGAAGGAGTTTCTGCAGGATGCGAACACCGGCTCCCTTCTCGATGTGTCT
TAGGTTCTCATTTCTACTCTCGCGCCCTCTTCAGGAGCAAAGAAGTCCGC
GATCAGATCTATTTGTATCTGTGGTCTCTGGTCAAGCGAGAACCTCGCCT
TTTAGTGACGCCctggagcgagggggaggaggaagaggggaaggatggca
ggggcgagcaggaaggggactaggaaagaagagaggaaggagttTTGTAC
AGATAGCATGGCGCCATCCATGTGTGCAGAGGGGTGAGAAATGAAGGCGA
GGTCGTGGAGCCGAAACGTCACTTGAAGGCTCTCCCACGTTACTTCCCTG
TGCGAGATCTTTGTTGAAGAAAGTAATGGCTGCTTCTTCTTAT

Coding sequence (CDS) from alignment at CM002472.1:466452..468494+

>rna7647 ID=rna7647|Name=rna7647|organism=Nannochloropsis gaditana|type=CDS|length=6636bp|location=Sequence derived from alignment at CM002472.1:466452..468494+ (Nannochloropsis gaditana)
ATGCCTTCAATGTGGTCAACACCAGGTCCGAGAAGACCGAAGCTCAGCAT
CATCGTCCTGGGCATatttttccttccgtccGTCCAGGGCTTCCTtcatc
cacctctccccgccttgctTCAAATTTCTTATCCGCTGTCTGCcggtcgc
tcctcctcctcctcgggcggTCAGCAGGCTCCCACCGAACATGTAAATCA
ACAAAAGCGGCGAAAACAGCCATTAGGACCAGAGATAGGATCCCAGTCGg
atgaagagaaaggaaaagcacaAGCCAATGCTGACagccccctctctccc
tcgaaCCCTCCCGaccgctcctcccccgccctctcgcCTTCGGCCGCGGC
TCGTCTAGAGCGCTTGCCCGACGACACGGAAGAAAGGATCGAGGTGGTGC
GTGTGCCCGACTTTGAGGAAATGCTTGCCTGGGCGATTAGGATGGATGCG
CGCGTGGAACGCCGGCGTATCGCGGGCCTAGGCGGCCTGGTGGcagagcc
tccttctccccaagTAGACCTGACCAAGAGGCGGCCGCTCTCAAAGAGGG
ATGAAGATAAAATGAACACCGTCATAAGAATGCTTTCCCAGCGCGCGGAG
AGCAAGCGTGTTTTCTACCCGAatgagatggaggagctTCGTGAGGCGCT
CCGGGACATGGAGTCGTTGATGAAGGACGATGCCGAGCACCTCAAGAAGG
CGCAACAAGACGCACTCATCCTCAACAAGGCTGGGAGAGCCAAGAGCCGC
TTCcagaagaagcgggaggtgaTGATCGAGGAGACCGGGGACTTCGATCC
CATCTACGGGAGCAAAGAAGTCCGCGATCAGATCTATTTGTATCTGTGGT
CTCTGGTCAAGCGAGAACCTCGCCTTTTAGTGACGCCctggagcgagggg
gaggaggaagaggggaaggatggcaggggcgagcaggaaggggactagAT
GCCTTCAATGTGGTCAACACCAGGTCCGAGAAGACCGAAGCTCAGCATCA
TCGTCCTGGGCATatttttccttccgtccGTCCAGGGCTTCCTtcatcca
cctctccccgccttgctTCAAATTTCTTATCCGCTGTCTGCcggtcgctc
ctcctcctcctcgggcggTCAGCAGGCTCCCACCGAACATGTAAATCAAC
AAAAGCGGCGAAAACAGCCATTAGGACCAGAGATAGGATCCCAGTCGgat
gaagagaaaggaaaagcacaAGCCAATGCTGACagccccctctctccctc
gaaCCCTCCCGaccgctcctcccccgccctctcgcCTTCGGCCGCGGCTC
GTCTAGAGCGCTTGCCCGACGACACGGAAGAAAGGATCGAGGTGGTGCGT
GTGCCCGACTTTGAGGAAATGCTTGCCTGGGCGATTAGGATGGATGCGCG
CGTGGAACGCCGGCGTATCGCGGGCCTAGGCGGCCTGGTGGcagagcctc
cttctccccaagTAGACCTGACCAAGAGGCGGCCGCTCTCAAAGAGGGAT
GAAGATAAAATGAACACCGTCATAAGAATGCTTTCCCAGCGCGCGGAGAG
CAAGCGTGTTTTCTACCCGAatgagatggaggagctTCGTGAGGCGCTCC
GGGACATGGAGTCGTTGATGAAGGACGATGCCGAGCACCTCAAGAAGGCG
CAACAAGACGCACTCATCCTCAACAAGGCTGGGAGAGCCAAGAGCCGCTT
CcagaagaagcgggaggtgaTGATCGAGGAGACCGGGGACTTCGATCCCA
TCTACGGGAGCAAAGAAGTCCGCGATCAGATCTATTTGTATCTGTGGTCT
CTGGTCAAGCGAGAACCTCGCCTTTTAGTGACGCCctggagcgaggggga
ggaggaagaggggaaggatggcaggggcgagcaggaaggggactagATGC
CTTCAATGTGGTCAACACCAGGTCCGAGAAGACCGAAGCTCAGCATCATC
GTCCTGGGCATatttttccttccgtccGTCCAGGGCTTCCTtcatccacc
tctccccgccttgctTCAAATTTCTTATCCGCTGTCTGCcggtcgctcct
cctcctcctcgggcggTCAGCAGGCTCCCACCGAACATGTAAATCAACAA
AAGCGGCGAAAACAGCCATTAGGACCAGAGATAGGATCCCAGTCGgatga
agagaaaggaaaagcacaAGCCAATGCTGACagccccctctctccctcga
aCCCTCCCGaccgctcctcccccgccctctcgcCTTCGGCCGCGGCTCGT
CTAGAGCGCTTGCCCGACGACACGGAAGAAAGGATCGAGGTGGTGCGTGT
GCCCGACTTTGAGGAAATGCTTGCCTGGGCGATTAGGATGGATGCGCGCG
TGGAACGCCGGCGTATCGCGGGCCTAGGCGGCCTGGTGGcagagcctcct
tctccccaagTAGACCTGACCAAGAGGCGGCCGCTCTCAAAGAGGGATGA
AGATAAAATGAACACCGTCATAAGAATGCTTTCCCAGCGCGCGGAGAGCA
AGCGTGTTTTCTACCCGAatgagatggaggagctTCGTGAGGCGCTCCGG
GACATGGAGTCGTTGATGAAGGACGATGCCGAGCACCTCAAGAAGGCGCA
ACAAGACGCACTCATCCTCAACAAGGCTGGGAGAGCCAAGAGCCGCTTCc
agaagaagcgggaggtgaTGATCGAGGAGACCGGGGACTTCGATCCCATC
TACGGGAGCAAAGAAGTCCGCGATCAGATCTATTTGTATCTGTGGTCTCT
GGTCAAGCGAGAACCTCGCCTTTTAGTGACGCCctggagcgagggggagg
aggaagaggggaaggatggcaggggcgagcaggaaggggactagATGCCT
TCAATGTGGTCAACACCAGGTCCGAGAAGACCGAAGCTCAGCATCATCGT
CCTGGGCATatttttccttccgtccGTCCAGGGCTTCCTtcatccacctc
tccccgccttgctTCAAATTTCTTATCCGCTGTCTGCcggtcgctcctcc
tcctcctcgggcggTCAGCAGGCTCCCACCGAACATGTAAATCAACAAAA
GCGGCGAAAACAGCCATTAGGACCAGAGATAGGATCCCAGTCGgatgaag
agaaaggaaaagcacaAGCCAATGCTGACagccccctctctccctcgaaC
CCTCCCGaccgctcctcccccgccctctcgcCTTCGGCCGCGGCTCGTCT
AGAGCGCTTGCCCGACGACACGGAAGAAAGGATCGAGGTGGTGCGTGTGC
CCGACTTTGAGGAAATGCTTGCCTGGGCGATTAGGATGGATGCGCGCGTG
GAACGCCGGCGTATCGCGGGCCTAGGCGGCCTGGTGGcagagcctccttc
tccccaagTAGACCTGACCAAGAGGCGGCCGCTCTCAAAGAGGGATGAAG
ATAAAATGAACACCGTCATAAGAATGCTTTCCCAGCGCGCGGAGAGCAAG
CGTGTTTTCTACCCGAatgagatggaggagctTCGTGAGGCGCTCCGGGA
CATGGAGTCGTTGATGAAGGACGATGCCGAGCACCTCAAGAAGGCGCAAC
AAGACGCACTCATCCTCAACAAGGCTGGGAGAGCCAAGAGCCGCTTCcag
aagaagcgggaggtgaTGATCGAGGAGACCGGGGACTTCGATCCCATCTA
CGGGAGCAAAGAAGTCCGCGATCAGATCTATTTGTATCTGTGGTCTCTGG
TCAAGCGAGAACCTCGCCTTTTAGTGACGCCctggagcgagggggaggag
gaagaggggaaggatggcaggggcgagcaggaaggggactagATGCCTTC
AATGTGGTCAACACCAGGTCCGAGAAGACCGAAGCTCAGCATCATCGTCC
TGGGCATatttttccttccgtccGTCCAGGGCTTCCTtcatccacctctc
cccgccttgctTCAAATTTCTTATCCGCTGTCTGCcggtcgctcctcctc
ctcctcgggcggTCAGCAGGCTCCCACCGAACATGTAAATCAACAAAAGC
GGCGAAAACAGCCATTAGGACCAGAGATAGGATCCCAGTCGgatgaagag
aaaggaaaagcacaAGCCAATGCTGACagccccctctctccctcgaaCCC
TCCCGaccgctcctcccccgccctctcgcCTTCGGCCGCGGCTCGTCTAG
AGCGCTTGCCCGACGACACGGAAGAAAGGATCGAGGTGGTGCGTGTGCCC
GACTTTGAGGAAATGCTTGCCTGGGCGATTAGGATGGATGCGCGCGTGGA
ACGCCGGCGTATCGCGGGCCTAGGCGGCCTGGTGGcagagcctccttctc
cccaagTAGACCTGACCAAGAGGCGGCCGCTCTCAAAGAGGGATGAAGAT
AAAATGAACACCGTCATAAGAATGCTTTCCCAGCGCGCGGAGAGCAAGCG
TGTTTTCTACCCGAatgagatggaggagctTCGTGAGGCGCTCCGGGACA
TGGAGTCGTTGATGAAGGACGATGCCGAGCACCTCAAGAAGGCGCAACAA
GACGCACTCATCCTCAACAAGGCTGGGAGAGCCAAGAGCCGCTTCcagaa
gaagcgggaggtgaTGATCGAGGAGACCGGGGACTTCGATCCCATCTACG
GGAGCAAAGAAGTCCGCGATCAGATCTATTTGTATCTGTGGTCTCTGGTC
AAGCGAGAACCTCGCCTTTTAGTGACGCCctggagcgagggggaggagga
agaggggaaggatggcaggggcgagcaggaaggggactagATGCCTTCAA
TGTGGTCAACACCAGGTCCGAGAAGACCGAAGCTCAGCATCATCGTCCTG
GGCATatttttccttccgtccGTCCAGGGCTTCCTtcatccacctctccc
cgccttgctTCAAATTTCTTATCCGCTGTCTGCcggtcgctcctcctcct
cctcgggcggTCAGCAGGCTCCCACCGAACATGTAAATCAACAAAAGCGG
CGAAAACAGCCATTAGGACCAGAGATAGGATCCCAGTCGgatgaagagaa
aggaaaagcacaAGCCAATGCTGACagccccctctctccctcgaaCCCTC
CCGaccgctcctcccccgccctctcgcCTTCGGCCGCGGCTCGTCTAGAG
CGCTTGCCCGACGACACGGAAGAAAGGATCGAGGTGGTGCGTGTGCCCGA
CTTTGAGGAAATGCTTGCCTGGGCGATTAGGATGGATGCGCGCGTGGAAC
GCCGGCGTATCGCGGGCCTAGGCGGCCTGGTGGcagagcctccttctccc
caagTAGACCTGACCAAGAGGCGGCCGCTCTCAAAGAGGGATGAAGATAA
AATGAACACCGTCATAAGAATGCTTTCCCAGCGCGCGGAGAGCAAGCGTG
TTTTCTACCCGAatgagatggaggagctTCGTGAGGCGCTCCGGGACATG
GAGTCGTTGATGAAGGACGATGCCGAGCACCTCAAGAAGGCGCAACAAGA
CGCACTCATCCTCAACAAGGCTGGGAGAGCCAAGAGCCGCTTCcagaaga
agcgggaggtgaTGATCGAGGAGACCGGGGACTTCGATCCCATCTACGGG
AGCAAAGAAGTCCGCGATCAGATCTATTTGTATCTGTGGTCTCTGGTCAA
GCGAGAACCTCGCCTTTTAGTGACGCCctggagcgagggggaggaggaag
aggggaaggatggcaggggcgagcaggaaggggactagATGCCTTCAATG
TGGTCAACACCAGGTCCGAGAAGACCGAAGCTCAGCATCATCGTCCTGGG
CATatttttccttccgtccGTCCAGGGCTTCCTtcatccacctctccccg
ccttgctTCAAATTTCTTATCCGCTGTCTGCcggtcgctcctcctcctcc
tcgggcggTCAGCAGGCTCCCACCGAACATGTAAATCAACAAAAGCGGCG
AAAACAGCCATTAGGACCAGAGATAGGATCCCAGTCGgatgaagagaaag
gaaaagcacaAGCCAATGCTGACagccccctctctccctcgaaCCCTCCC
GaccgctcctcccccgccctctcgcCTTCGGCCGCGGCTCGTCTAGAGCG
CTTGCCCGACGACACGGAAGAAAGGATCGAGGTGGTGCGTGTGCCCGACT
TTGAGGAAATGCTTGCCTGGGCGATTAGGATGGATGCGCGCGTGGAACGC
CGGCGTATCGCGGGCCTAGGCGGCCTGGTGGcagagcctccttctcccca
agTAGACCTGACCAAGAGGCGGCCGCTCTCAAAGAGGGATGAAGATAAAA
TGAACACCGTCATAAGAATGCTTTCCCAGCGCGCGGAGAGCAAGCGTGTT
TTCTACCCGAatgagatggaggagctTCGTGAGGCGCTCCGGGACATGGA
GTCGTTGATGAAGGACGATGCCGAGCACCTCAAGAAGGCGCAACAAGACG
CACTCATCCTCAACAAGGCTGGGAGAGCCAAGAGCCGCTTCcagaagaag
cgggaggtgaTGATCGAGGAGACCGGGGACTTCGATCCCATCTACGGGAG
CAAAGAAGTCCGCGATCAGATCTATTTGTATCTGTGGTCTCTGGTCAAGC
GAGAACCTCGCCTTTTAGTGACGCCctggagcgagggggaggaggaagag
gggaaggatggcaggggcgagcaggaaggggactag

Synonyms

Publications