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Properties
| Property Name | Value |
|---|
| Product | medium-chain-fatty-acid- ligase (medium-chain acyl- synthetase) |
| Orig transcript id | gnl|cribi|Naga_100245g4.7078.mrna |
| Orig protein id | gnl|cribi|Naga_100245g4.7078 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002472.1 | supercontig | CM002472.1:457546..459848 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7642 ID=rna7642|Name=rna7642|organism=Nannochloropsis gaditana|type=mRNA|length=1437bp
ATGGCGGCCCGTGCCACCAATACTTCGTTCCTTCAGCGTTTGGCGCAGCA
GTTGCGGTCCAAAATGCCTCGAGCCAAGCGCCTTCTCGCTTTCCCGACTC
GACCTGCCATCAACGAGGAGCTGATGCTACGTGTTGAAGAGCTTGCTCGG
CAGCGGACGACTCCTCTTTCCTTGTTGGACCTTTATCGGTTCGGAAATCA
CCCGAGTCCAGCACAGCGCCTTCGAAACGCTCAATTTCTGCACTTTGAGC
TCCCCCGCCGCATCGCCCAGCGCGTGATCGAGCTGCGAGACCGCCTGCCC
CCAGGCCTGGCGGAGAAACGAGGCATCCAGAACGTAATGGGATGGTACGC
TGGCTACGTCGAAGAGCTTCAAGCCTTTCCTAAGCCCATGGATAGTGAGC
AGGAGTATGACTTCACCTGCCTCTTGGCTTCCATCCTTTGCGACCACACC
TCTATCCCTCGAGCCCTGGCACACGGCATTCAGGAGTATAGAGCGGATAT
GAGCTACGAAGACCTCCTTCTGGATCCAGATCGGGAGAGCATTGAGCAGA
CGCTGACGGGCTTTTACACGGCTCGGATCGGCCTCCGCTTCCTGGTGGAG
CACCACATCGTCAGCAACGACGCCCGGGAGGGCTACTCCGGCATCATTGC
TTCCCATTGCTCGCCTCGTCAGGTCGCAACCGCCGCGGCCGCGGACGCAG
AACGCCTCTGCCGCGCCGCTTTAGGGAACGCCCCCACCGTTCGCACCATT
GGCACCGACAAGGACGACTTCTGCTACGTTCCTTCCCATCTTTATTACAT
GATTGTGGAGACGCTGAAGAACTCCTGCCGGGCCGTAGTGGAGAAACACG
ACCCCATCTATCGGGCAGCGGCACTGGAAGTATCTCCTTCCACTCTCCTC
GACCAAAGAATAAGACTCGAGGCTCGCCAGAAGGCCTTTGCGAGGGCGAC
GCCCACAGAACTTCCTCCCGTGAAAGTGATCGTGGCCATGGGCGAGGAGG
ACGTCACCATCAAGGTCGCCGACGAGGGCGGCGGAGTGCCACGGTCAGAC
CTCCGGTTGCTCTGGACTTTCTTCTACACCACCTTCCCTCCCTCCTTCCC
TTCCTCACCTGCCCCCTTGCCAGGCGGGAGGGCGGGAGGGGGTTCCTTGG
ATGAGAATGTGACCGTGACGAACCCAGCGGGAAACGTCTCGGCCGGTCCT
TTTACTTTTCCCAACGTCGGTACTGAGCCCGTGCTGGCGGGACACGGCAT
GGGCCTCCCTCTCTCTCGGATTTACGCTCGGTACTTCGGCGGGGACCTGG
AGGTAAAGTCCCTGGAAGGCTTTGGGATGGACTCCTATCTACACCTGTGC
AAGCTCGGAGACAAGTGCGAAGATATTGGGTTACAGGTTATGCGCAGTCC
CGCCGGCCGAGATAGTACGCCAACAGAAACCTCTTGA back to topprotein sequence of rna7642 >rna7642-protein ID=rna7642-protein|Name=rna7642|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTL
NPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDE
ERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSG
TTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGI
PYTAAMVGCKLVLPGSALDGASLYELMKEEGVPPEEGERDGGVRAGHQES
FYTDDDGERWFLTGDVATICPDGYIKITDR back to topmRNA from alignment at CM002472.1:457546..459848- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7642 ID=rna7642|Name=rna7642|organism=Nannochloropsis gaditana|type=mRNA|length=2303bp|location=Sequence derived from alignment at CM002472.1:457546..459848- (Nannochloropsis gaditana)
ATGCACGGCCGAAGCAAGAAGCTCGGCAACATTTTAGAGGAGCTGGGCGT
CAAGAAAGGAGACAGGGTGGCAACACTGGCCATGAATACGTACAGGTAAA
CTTCGAACGAATCAAAGATAGATGTGAAATATAATCTACGCCAAATTAAG
AGCATTGAAGGAGAGAGTGGGACACGCCAATCGTCTTTTCGCTCCGGCTA
TCTCTCCACTTAGTCTAAGTTTCTGCCCCCTGTAATCGTCCTTTTTATGA
TCGTTACGACGAATTGCATCCTTTGCCATCCTATCAATACAGACATATGG
AACTTTACTTTGCCGTTTCGGGTGCTGGGGCCGTACTACACACCTTGAAT
CCTCGTTTGTTTGCAGAGACTCTCACATGGATCGTCCGCCACGCCCAAGA
CAGCGTCCTCTTCTTCGACCCCTGCTTCGCCTCCCTTGTGGAGCGACTCC
TCCCGCACTGTCCAAGTGTTAAGCACTGGATCTGCCTCGTGGACGAAGAG
CGGATGCCAGTCCTACCTTCCCTTTCTCCGTCCTCTCCTTTCCTTTCCCT
TCACAACTACGAGGCTTTGCTTCGGGAGGGAAAAGAGGACTATGTGTGGC
CCATATTGGAGGAGACAGCAGCCTCTAGTCTCTGCTATACAAGCGGCACG
ACGGGTATGTTGTTTCGCCCATTTCCCTTCAGGTCCTGCCCGTACACAGG
TCATCGTTTCCCTCACTCACCCTTTTTGCGCTCTCTCCCTCCCTCCTCCT
TCCCTCTCTTCCCTCCCTTCAAGGCCCACCCAAGGGAGTGCTATACTCTC
ATCGCTCCACCGTGCTTCACTCCTTGGCCGCCGCCCTCCCTGACTCCCTC
AACGTCTCTGCCCGCGACACTGTTTTGCCCGCCGTTCCTCTTTTTCACGT
GAACGCCTGGGGTGAGGTGATGGGGCCATGGGAGTGCGGCGAGGGCAGGT
TATTTTATCCCCTGGGGGAAAGGAACAAAGGCAGGCGATTCAATGCTCAG
ACAAGATAGACAAACCTCTTGATGGGATGCTCGAAAAGAAGTATTGGAAG
GAAATTTGCCTTTTTGTGCCGGTTCAAGAGCCTCCCTCGATCTCCTTTCT
CTTCATCTCTTCCCCTCGTTGCAGGCATCCCCTACACTGCAGCCATGGTA
GGGTGCAAGCTGGTCTTGCCCGGTTCCGCTTTGGATGGGGCTTCCCTGTA
CGAGCTGATGAAGGAAGAGGGGGTGCGTGGCAAGGAGGGAGGGAGGGCGA
GAGGCAAAGGAGGGGTCAGGCGCTGATTCTTCTGAGTGGCTGATCACCTT
GACTAGTAGCACTCTGTAGAGGTCTGGTACATTGTCGGCCATCGGACAAT
GGCTTCGGAGAGAGACCCAAAGGCCCGCCTTTCACCCATTCCTGCTGTCT
CCTCCGTCCCTTCCTCCCCCTCCCTCAGGTCACACTCGCCGCTGGCGTGC
CCACGGTCTGGCTCCCTGTCCTCCACCACCTCGACCAGGACCCTGGACAG
AGGCTCCCCAAATTGCGGCGTCTGGTCATCGGAGGCGCTGCCTGCCCTCC
CTGCATGCTGCGTGCCTTCAAAGAGCGGCACGGGATCGAGGTCTTGCACG
CGTGGGGGATGACGGAAATGTCCCCCATTGGCACCGCATCCACCTTGAAG
GTTGCTTGCCTCCTCCTCCCTCTCCCTCTTGAAACCTATAGCGCGTCTTC
TCCTCGAATACGTCCACCTGCGTCACACCAGGCACCATGCCCCTGTATCA
CACCCACCTTTGCTCCCTTCTTTCCTTTTCCTTTCTCACAGGGCAAGCAC
CTCGCTCTCCCCACCGAAGATCAACACAACGTCCTCTCCACGCAAGGAAG
GACCATCTACGGCGTGGACCTTCGCATCGTCGCGCCCTCCCCCCCCCCAC
CCTCCCTTCCTCGTCTTCCTCCTACCCCCCACCCTCCCCTCCTCGGTGGA
GCGAGGTGCCCTGGGATGGCGTCAGTCCGGGCGAGCTGTGTGCCCGAGGC
CACTGGGTAGCAACGGACTACTTCTCTCCCATACAAGCACCGGAGGAGGG
AGAAAGGGACGGAGGGGTGAGAGCAGGCCACCAAGAGAGTTTCTACACGG
TAAGGCGCGCGCCGGAAGCCACACCTGTCGAACTGTTTACCTCATCGCCC
AGGCCTCATCCTTTCTCTTCCTCCCTCCCGCCGTGCCTCCCCGCCTCCCT
CCCCTCCGTGCTTCCCTAGGACGACGATGGCGAGCGCTGGTTCCTGACGG
GGGACGTGGCTACCATCTGTCCGGATGGCTACATTAAGATCACGGATAGG
TGA back to topCoding sequence (CDS) from alignment at CM002472.1:457546..459848- >rna7642 ID=rna7642|Name=rna7642|organism=Nannochloropsis gaditana|type=CDS|length=5058bp|location=Sequence derived from alignment at CM002472.1:457546..459848- (Nannochloropsis gaditana)
GACGACGATGGCGAGCGCTGGTTCCTGACGGGGGACGTGGCTACCATCTG
TCCGGATGGCTACATTAAGATCACGGATAGGTGACACCGGAGGAGGGAGA
AAGGGACGGAGGGGTGAGAGCAGGCCACCAAGAGAGTTTCTACACGGCAT
CCCCTACACTGCAGCCATGGTAGGGTGCAAGCTGGTCTTGCCCGGTTCCG
CTTTGGATGGGGCTTCCCTGTACGAGCTGATGAAGGAAGAGGGGGTGCGC
CCACCCAAGGGAGTGCTATACTCTCATCGCTCCACCGTGCTTCACTCCTT
GGCCGCCGCCCTCCCTGACTCCCTCAACGTCTCTGCCCGCGACACTGTTT
TGCCCGCCGTTCCTCTTTTTCACGTGAACGCCTGGGACATATGGAACTTT
ACTTTGCCGTTTCGGGTGCTGGGGCCGTACTACACACCTTGAATCCTCGT
TTGTTTGCAGAGACTCTCACATGGATCGTCCGCCACGCCCAAGACAGCGT
CCTCTTCTTCGACCCCTGCTTCGCCTCCCTTGTGGAGCGACTCCTCCCGC
ACTGTCCAAGTGTTAAGCACTGGATCTGCCTCGTGGACGAAGAGCGGATG
CCAGTCCTACCTTCCCTTTCTCCGTCCTCTCCTTTCCTTTCCCTTCACAA
CTACGAGGCTTTGCTTCGGGAGGGAAAAGAGGACTATGTGTGGCCCATAT
TGGAGGAGACAGCAGCCTCTAGTCTCTGCTATACAAGCGGCACGACGGAT
GCACGGCCGAAGCAAGAAGCTCGGCAACATTTTAGAGGAGCTGGGCGTCA
AGAAAGGAGACAGGGTGGCAACACTGGCCATGAATACGTACAGGACGACG
ATGGCGAGCGCTGGTTCCTGACGGGGGACGTGGCTACCATCTGTCCGGAT
GGCTACATTAAGATCACGGATAGGTGACACCGGAGGAGGGAGAAAGGGAC
GGAGGGGTGAGAGCAGGCCACCAAGAGAGTTTCTACACGGCATCCCCTAC
ACTGCAGCCATGGTAGGGTGCAAGCTGGTCTTGCCCGGTTCCGCTTTGGA
TGGGGCTTCCCTGTACGAGCTGATGAAGGAAGAGGGGGTGCGCCCACCCA
AGGGAGTGCTATACTCTCATCGCTCCACCGTGCTTCACTCCTTGGCCGCC
GCCCTCCCTGACTCCCTCAACGTCTCTGCCCGCGACACTGTTTTGCCCGC
CGTTCCTCTTTTTCACGTGAACGCCTGGGACATATGGAACTTTACTTTGC
CGTTTCGGGTGCTGGGGCCGTACTACACACCTTGAATCCTCGTTTGTTTG
CAGAGACTCTCACATGGATCGTCCGCCACGCCCAAGACAGCGTCCTCTTC
TTCGACCCCTGCTTCGCCTCCCTTGTGGAGCGACTCCTCCCGCACTGTCC
AAGTGTTAAGCACTGGATCTGCCTCGTGGACGAAGAGCGGATGCCAGTCC
TACCTTCCCTTTCTCCGTCCTCTCCTTTCCTTTCCCTTCACAACTACGAG
GCTTTGCTTCGGGAGGGAAAAGAGGACTATGTGTGGCCCATATTGGAGGA
GACAGCAGCCTCTAGTCTCTGCTATACAAGCGGCACGACGGATGCACGGC
CGAAGCAAGAAGCTCGGCAACATTTTAGAGGAGCTGGGCGTCAAGAAAGG
AGACAGGGTGGCAACACTGGCCATGAATACGTACAGGACGACGATGGCGA
GCGCTGGTTCCTGACGGGGGACGTGGCTACCATCTGTCCGGATGGCTACA
TTAAGATCACGGATAGGTGACACCGGAGGAGGGAGAAAGGGACGGAGGGG
TGAGAGCAGGCCACCAAGAGAGTTTCTACACGGCATCCCCTACACTGCAG
CCATGGTAGGGTGCAAGCTGGTCTTGCCCGGTTCCGCTTTGGATGGGGCT
TCCCTGTACGAGCTGATGAAGGAAGAGGGGGTGCGCCCACCCAAGGGAGT
GCTATACTCTCATCGCTCCACCGTGCTTCACTCCTTGGCCGCCGCCCTCC
CTGACTCCCTCAACGTCTCTGCCCGCGACACTGTTTTGCCCGCCGTTCCT
CTTTTTCACGTGAACGCCTGGGACATATGGAACTTTACTTTGCCGTTTCG
GGTGCTGGGGCCGTACTACACACCTTGAATCCTCGTTTGTTTGCAGAGAC
TCTCACATGGATCGTCCGCCACGCCCAAGACAGCGTCCTCTTCTTCGACC
CCTGCTTCGCCTCCCTTGTGGAGCGACTCCTCCCGCACTGTCCAAGTGTT
AAGCACTGGATCTGCCTCGTGGACGAAGAGCGGATGCCAGTCCTACCTTC
CCTTTCTCCGTCCTCTCCTTTCCTTTCCCTTCACAACTACGAGGCTTTGC
TTCGGGAGGGAAAAGAGGACTATGTGTGGCCCATATTGGAGGAGACAGCA
GCCTCTAGTCTCTGCTATACAAGCGGCACGACGGATGCACGGCCGAAGCA
AGAAGCTCGGCAACATTTTAGAGGAGCTGGGCGTCAAGAAAGGAGACAGG
GTGGCAACACTGGCCATGAATACGTACAGGACGACGATGGCGAGCGCTGG
TTCCTGACGGGGGACGTGGCTACCATCTGTCCGGATGGCTACATTAAGAT
CACGGATAGGTGACACCGGAGGAGGGAGAAAGGGACGGAGGGGTGAGAGC
AGGCCACCAAGAGAGTTTCTACACGGCATCCCCTACACTGCAGCCATGGT
AGGGTGCAAGCTGGTCTTGCCCGGTTCCGCTTTGGATGGGGCTTCCCTGT
ACGAGCTGATGAAGGAAGAGGGGGTGCGCCCACCCAAGGGAGTGCTATAC
TCTCATCGCTCCACCGTGCTTCACTCCTTGGCCGCCGCCCTCCCTGACTC
CCTCAACGTCTCTGCCCGCGACACTGTTTTGCCCGCCGTTCCTCTTTTTC
ACGTGAACGCCTGGGACATATGGAACTTTACTTTGCCGTTTCGGGTGCTG
GGGCCGTACTACACACCTTGAATCCTCGTTTGTTTGCAGAGACTCTCACA
TGGATCGTCCGCCACGCCCAAGACAGCGTCCTCTTCTTCGACCCCTGCTT
CGCCTCCCTTGTGGAGCGACTCCTCCCGCACTGTCCAAGTGTTAAGCACT
GGATCTGCCTCGTGGACGAAGAGCGGATGCCAGTCCTACCTTCCCTTTCT
CCGTCCTCTCCTTTCCTTTCCCTTCACAACTACGAGGCTTTGCTTCGGGA
GGGAAAAGAGGACTATGTGTGGCCCATATTGGAGGAGACAGCAGCCTCTA
GTCTCTGCTATACAAGCGGCACGACGGATGCACGGCCGAAGCAAGAAGCT
CGGCAACATTTTAGAGGAGCTGGGCGTCAAGAAAGGAGACAGGGTGGCAA
CACTGGCCATGAATACGTACAGGACGACGATGGCGAGCGCTGGTTCCTGA
CGGGGGACGTGGCTACCATCTGTCCGGATGGCTACATTAAGATCACGGAT
AGGTGACACCGGAGGAGGGAGAAAGGGACGGAGGGGTGAGAGCAGGCCAC
CAAGAGAGTTTCTACACGGCATCCCCTACACTGCAGCCATGGTAGGGTGC
AAGCTGGTCTTGCCCGGTTCCGCTTTGGATGGGGCTTCCCTGTACGAGCT
GATGAAGGAAGAGGGGGTGCGCCCACCCAAGGGAGTGCTATACTCTCATC
GCTCCACCGTGCTTCACTCCTTGGCCGCCGCCCTCCCTGACTCCCTCAAC
GTCTCTGCCCGCGACACTGTTTTGCCCGCCGTTCCTCTTTTTCACGTGAA
CGCCTGGGACATATGGAACTTTACTTTGCCGTTTCGGGTGCTGGGGCCGT
ACTACACACCTTGAATCCTCGTTTGTTTGCAGAGACTCTCACATGGATCG
TCCGCCACGCCCAAGACAGCGTCCTCTTCTTCGACCCCTGCTTCGCCTCC
CTTGTGGAGCGACTCCTCCCGCACTGTCCAAGTGTTAAGCACTGGATCTG
CCTCGTGGACGAAGAGCGGATGCCAGTCCTACCTTCCCTTTCTCCGTCCT
CTCCTTTCCTTTCCCTTCACAACTACGAGGCTTTGCTTCGGGAGGGAAAA
GAGGACTATGTGTGGCCCATATTGGAGGAGACAGCAGCCTCTAGTCTCTG
CTATACAAGCGGCACGACGGATGCACGGCCGAAGCAAGAAGCTCGGCAAC
ATTTTAGAGGAGCTGGGCGTCAAGAAAGGAGACAGGGTGGCAACACTGGC
CATGAATACGTACAGGACGACGATGGCGAGCGCTGGTTCCTGACGGGGGA
CGTGGCTACCATCTGTCCGGATGGCTACATTAAGATCACGGATAGGTGAC
ACCGGAGGAGGGAGAAAGGGACGGAGGGGTGAGAGCAGGCCACCAAGAGA
GTTTCTACACGGCATCCCCTACACTGCAGCCATGGTAGGGTGCAAGCTGG
TCTTGCCCGGTTCCGCTTTGGATGGGGCTTCCCTGTACGAGCTGATGAAG
GAAGAGGGGGTGCGCCCACCCAAGGGAGTGCTATACTCTCATCGCTCCAC
CGTGCTTCACTCCTTGGCCGCCGCCCTCCCTGACTCCCTCAACGTCTCTG
CCCGCGACACTGTTTTGCCCGCCGTTCCTCTTTTTCACGTGAACGCCTGG
GACATATGGAACTTTACTTTGCCGTTTCGGGTGCTGGGGCCGTACTACAC
ACCTTGAATCCTCGTTTGTTTGCAGAGACTCTCACATGGATCGTCCGCCA
CGCCCAAGACAGCGTCCTCTTCTTCGACCCCTGCTTCGCCTCCCTTGTGG
AGCGACTCCTCCCGCACTGTCCAAGTGTTAAGCACTGGATCTGCCTCGTG
GACGAAGAGCGGATGCCAGTCCTACCTTCCCTTTCTCCGTCCTCTCCTTT
CCTTTCCCTTCACAACTACGAGGCTTTGCTTCGGGAGGGAAAAGAGGACT
ATGTGTGGCCCATATTGGAGGAGACAGCAGCCTCTAGTCTCTGCTATACA
AGCGGCACGACGGATGCACGGCCGAAGCAAGAAGCTCGGCAACATTTTAG
AGGAGCTGGGCGTCAAGAAAGGAGACAGGGTGGCAACACTGGCCATGAAT
ACGTACAG back to top
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