EWM23049.1, cds7622 (CDS) Nannochloropsis gaditana

Overview
NameEWM23049.1
Unique Namecds7622
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:459754..459848 -
Alignment locationCM002472.1:459195..459556 -
Alignment locationCM002472.1:458938..459075 -
Alignment locationCM002472.1:458623..458724 -
Alignment locationCM002472.1:457750..457811 -
Alignment locationCM002472.1:457546..457629 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23049.1
Productmedium-chain-fatty-acid- ligase (medium-chain acyl- synthetase)
Orig transcript idgnl|cribi|Naga_100245g4.7078.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:459754..459848 -
CM002472.1supercontigCM002472.1:459195..459556 -
CM002472.1supercontigCM002472.1:458938..459075 -
CM002472.1supercontigCM002472.1:458623..458724 -
CM002472.1supercontigCM002472.1:457750..457811 -
CM002472.1supercontigCM002472.1:457546..457629 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR020845AMP-binding_CS
IPR000873AMP-dep_Synth/Lig
Homology
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|585103859|gb|EWM23049.1| (medium-chain-fatty-acid- ligase (medium-chain acyl- synthetase) [Nannochloropsis gaditana])

HSP 1 Score: 576.63 bits (1485), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query:    1 MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGVPPEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR 280
            MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGVPPEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR
Sbjct:    1 MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGVPPEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR 280          
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|553194324|ref|XP_005855929.1| (acyl-CoA synthetase [Nannochloropsis gaditana CCMP526] >gi|422293130|gb|EKU20430.1| acyl-CoA synthetase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 356.681 bits (914), Expect = 4.388e-118
Identity = 185/232 (79.74%), Postives = 185/232 (79.74%), Query Frame = 0
Query:    1 MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
            MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIV HAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTG                                              IPYTAAMVGCKLVLPGSALDGASLYELMKEEGV
Sbjct:    1 MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVHHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTG----------------------------------------------IPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 186          

HSP 2 Score: 106.301 bits (264), Expect = 2.042e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0
Query:  234 PEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR 280
            PEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR
Sbjct:  323 PEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR 369          
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1012141896|gb|KYP12566.1| (long-chain fatty acid--CoA ligase [Limnobacter sp. CACIAM 66H1])

HSP 1 Score: 292.352 bits (747), Expect = 2.084e-92
Identity = 134/229 (58.52%), Postives = 174/229 (75.98%), Query Frame = 0
Query:    4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
            R+KKL N L ELGV++G+ +ATLA N YRH+E+Y+AVSG GAV+HTLNPRLF E L +I+ HA+D+++FFD  FA L+  + P CP+VK W+ + DE  MP  P+++         NYEAL++   + YVWP L+E  AS LCYTSGTTG PKG LYSHRSTVLH++AA  PD+L +S+RDT+LP VP+FHVNAWGIPY A M G K+V+PG ALDGAS++EL++ E V
Sbjct:   48 RAKKLANTLTELGVQQGENIATLAWNGYRHVEIYYAVSGMGAVVHTLNPRLFPEQLVYIINHAKDTMVFFDSTFAPLIRAIAPACPTVKRWVQMCDEAVMPSEPAVA------GCLNYEALIKNASDQYVWPQLDENTASGLCYTSGTTGNPKGALYSHRSTVLHAMAACTPDALGLSSRDTILPVVPMFHVNAWGIPYIALMTGAKMVMPGGALDGASIFELLESEKV 270          
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|149824834|gb|EDM84048.1| (acyl-CoA synthase [Limnobacter sp. MED105])

HSP 1 Score: 292.352 bits (747), Expect = 2.261e-92
Identity = 134/229 (58.52%), Postives = 175/229 (76.42%), Query Frame = 0
Query:    4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
            R+KKL N L  LGV++G+ +ATLA N YRH+E+Y+AVSG GAV+HTLNPRLF E L +I+ HA+D+++FFD  FA L++ + P CP+VK W+ + DE  MP   +++         NYEAL+++  + YVWP L+E AAS LCYTSGTTG PKG LYSHRSTVLH++AA  PD+L +S+RDT+LP VP+FHVNAWGIPY A M G K+V+PG ALDGAS+YEL++ E V
Sbjct:   43 RTKKLANTLTSLGVQQGENIATLAWNGYRHVEIYYAVSGMGAVVHTLNPRLFPEQLVYIINHAKDTMVFFDSTFAPLIKAIAPACPTVKRWVQMCDEAAMPAEQAVA------GCLNYEALIKDASDHYVWPQLDENAASGLCYTSGTTGNPKGALYSHRSTVLHAMAACTPDALGLSSRDTILPVVPMFHVNAWGIPYIALMTGAKMVMPGGALDGASIYELLESEKV 265          
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1180278312|ref|WP_083797117.1| (long-chain fatty acid--CoA ligase [Limnobacter sp. MED105])

HSP 1 Score: 291.967 bits (746), Expect = 2.945e-92
Identity = 134/229 (58.52%), Postives = 175/229 (76.42%), Query Frame = 0
Query:    4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
            R+KKL N L  LGV++G+ +ATLA N YRH+E+Y+AVSG GAV+HTLNPRLF E L +I+ HA+D+++FFD  FA L++ + P CP+VK W+ + DE  MP   +++         NYEAL+++  + YVWP L+E AAS LCYTSGTTG PKG LYSHRSTVLH++AA  PD+L +S+RDT+LP VP+FHVNAWGIPY A M G K+V+PG ALDGAS+YEL++ E V
Sbjct:   44 RTKKLANTLTSLGVQQGENIATLAWNGYRHVEIYYAVSGMGAVVHTLNPRLFPEQLVYIINHAKDTMVFFDSTFAPLIKAIAPACPTVKRWVQMCDEAAMPAEQAVA------GCLNYEALIKDASDHYVWPQLDENAASGLCYTSGTTGNPKGALYSHRSTVLHAMAACTPDALGLSSRDTILPVVPMFHVNAWGIPYIALMTGAKMVMPGGALDGASIYELLESEKV 266          
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|731478114|gb|AIZ64422.1| (long-chain fatty acid--CoA ligase [Hymenobacter sp. DG25B])

HSP 1 Score: 288.886 bits (738), Expect = 5.766e-91
Identity = 139/231 (60.17%), Postives = 166/231 (71.86%), Query Frame = 0
Query:    2 HGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
            H RSK+L N L+ELG+  G+RV TLA NT+RH ELY+ +SG GAV HT+NPRLF E L +I+ HA+D ++FFD  F  LVERL P CP+V+ W+ + D   MP   +L        +  YE LL    E++ WP+ +E  ASSLCYTSGTT  PKGVLYSHRSTVLHS AAALPD  N SARD +LP VP+FHVNAWGIPY A M+GCKLVLPG  LD ASLYEL + EGV
Sbjct:   46 HRRSKQLANALKELGINWGERVGTLAWNTHRHFELYYGISGMGAVCHTINPRLFPEQLVYIINHAEDRLIFFDLTFLPLVERLAPLCPTVEAWVLMTDRAHMPEATALPGE-----VRCYEDLLAAHNEEFTWPVFDENTASSLCYTSGTTDQPKGVLYSHRSTVLHSYAAALPDCFNCSARDVILPVVPMFHVNAWGIPYLAPMIGCKLVLPGPGLDAASLYELFENEGV 271          
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1175474303|ref|WP_082017110.1| (long-chain fatty acid--CoA ligase [Hymenobacter sp. DG25B])

HSP 1 Score: 288.5 bits (737), Expect = 5.900e-91
Identity = 139/231 (60.17%), Postives = 166/231 (71.86%), Query Frame = 0
Query:    2 HGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
            H RSK+L N L+ELG+  G+RV TLA NT+RH ELY+ +SG GAV HT+NPRLF E L +I+ HA+D ++FFD  F  LVERL P CP+V+ W+ + D   MP   +L        +  YE LL    E++ WP+ +E  ASSLCYTSGTT  PKGVLYSHRSTVLHS AAALPD  N SARD +LP VP+FHVNAWGIPY A M+GCKLVLPG  LD ASLYEL + EGV
Sbjct:   42 HRRSKQLANALKELGINWGERVGTLAWNTHRHFELYYGISGMGAVCHTINPRLFPEQLVYIINHAEDRLIFFDLTFLPLVERLAPLCPTVEAWVLMTDRAHMPEATALPGE-----VRCYEDLLAAHNEEFTWPVFDENTASSLCYTSGTTDQPKGVLYSHRSTVLHSYAAALPDCFNCSARDVILPVVPMFHVNAWGIPYLAPMIGCKLVLPGPGLDAASLYELFENEGV 267          
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|586954894|gb|AHJ96628.1| (AMP-dependent synthetase and ligase [Hymenobacter swuensis DY53])

HSP 1 Score: 288.115 bits (736), Expect = 8.706e-91
Identity = 139/229 (60.70%), Postives = 168/229 (73.36%), Query Frame = 0
Query:    4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
            RS++L N L+ LG++ GDRV TLA NT+RH+ELY+AVSG+GAV HT NPRLF E L +I+ HA+D +LFFD  F  LVE+L P CP+V+ W+ + D   MP   +L       +L  YE LL    +++ WP+ +E  ASSLCYTSGTT  PKGVLYSHRST+LHS AAALPD  N SARD +LP VP+FHVNAWGIPY A MVGCKLVLPG  LD ASLYEL + EGV
Sbjct:   44 RSRQLANALQRLGIRSGDRVGTLAWNTHRHLELYYAVSGSGAVCHTSNPRLFPEQLVYIINHAEDRLLFFDLTFLPLVEKLAPSCPTVEAWVLMTDRAHMPETTTLP------NLRCYEDLLAAESDEFEWPVFDENTASSLCYTSGTTDQPKGVLYSHRSTLLHSYAAALPDCFNCSARDVILPVVPMFHVNAWGIPYLAPMVGCKLVLPGPGLDAASLYELFETEGV 266          
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1175220421|ref|WP_081768283.1| (long-chain fatty acid--CoA ligase [Hymenobacter swuensis])

HSP 1 Score: 288.115 bits (736), Expect = 1.096e-90
Identity = 139/229 (60.70%), Postives = 168/229 (73.36%), Query Frame = 0
Query:    4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
            RS++L N L+ LG++ GDRV TLA NT+RH+ELY+AVSG+GAV HT NPRLF E L +I+ HA+D +LFFD  F  LVE+L P CP+V+ W+ + D   MP   +L       +L  YE LL    +++ WP+ +E  ASSLCYTSGTT  PKGVLYSHRST+LHS AAALPD  N SARD +LP VP+FHVNAWGIPY A MVGCKLVLPG  LD ASLYEL + EGV
Sbjct:   49 RSRQLANALQRLGIRSGDRVGTLAWNTHRHLELYYAVSGSGAVCHTSNPRLFPEQLVYIINHAEDRLLFFDLTFLPLVEKLAPSCPTVEAWVLMTDRAHMPETTTLP------NLRCYEDLLAAESDEFEWPVFDENTASSLCYTSGTTDQPKGVLYSHRSTLLHSYAAALPDCFNCSARDVILPVVPMFHVNAWGIPYLAPMVGCKLVLPGPGLDAASLYELFETEGV 271          
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1209960518|ref|WP_088464313.1| (long-chain fatty acid--CoA ligase [Hymenobacter sp. CCM 8682] >gi|1209171467|gb|OWP63176.1| long-chain fatty acid--CoA ligase [Hymenobacter sp. CCM 8682])

HSP 1 Score: 287.73 bits (735), Expect = 1.375e-90
Identity = 137/229 (59.83%), Postives = 166/229 (72.49%), Query Frame = 0
Query:    4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
            RS++L N L  LG+  GDRV TLA NT+RH+ELY+AVSG+GAV HT+NPRLF E + +I+ HAQD  +FFD  F  LVE+L  HCP V+ W+ + D   MP       S+   +LH YE L+     DY WP+ +E  ASSLCYTSGTT  PKGVLYSHRST+LHS AAALPD  N S++D +LP VP+FHVNAWGIPY A M+GCKLVLPG  LD ASLYEL ++EGV
Sbjct:   44 RSRQLANALARLGIANGDRVGTLAWNTHRHLELYYAVSGSGAVCHTINPRLFPEQIVYIIGHAQDRAVFFDLTFLPLVEKLAAHCPGVEAWVLMSDRAHMP------ESTALPNLHCYEDLVAAENADYQWPVFDENTASSLCYTSGTTAEPKGVLYSHRSTLLHSFAAALPDCFNCSSQDVILPVVPMFHVNAWGIPYLAPMLGCKLVLPGPGLDAASLYELFEQEGV 266          
The following BLAST results are available for this feature:
BLAST of EWM23049.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103859|gb|EWM23049.1|0.000e+0100.00medium-chain-fatty-acid- ligase (medium-chain acyl... [more]
gi|553194324|ref|XP_005855929.1|4.388e-11879.74acyl-CoA synthetase [Nannochloropsis gaditana CCMP... [more]
gi|1012141896|gb|KYP12566.1|2.084e-9258.52long-chain fatty acid--CoA ligase [Limnobacter sp.... [more]
gi|149824834|gb|EDM84048.1|2.261e-9258.52acyl-CoA synthase [Limnobacter sp. MED105][more]
gi|1180278312|ref|WP_083797117.1|2.945e-9258.52long-chain fatty acid--CoA ligase [Limnobacter sp.... [more]
gi|731478114|gb|AIZ64422.1|5.766e-9160.17long-chain fatty acid--CoA ligase [Hymenobacter sp... [more]
gi|1175474303|ref|WP_082017110.1|5.900e-9160.17long-chain fatty acid--CoA ligase [Hymenobacter sp... [more]
gi|586954894|gb|AHJ96628.1|8.706e-9160.70AMP-dependent synthetase and ligase [Hymenobacter ... [more]
gi|1175220421|ref|WP_081768283.1|1.096e-9060.70long-chain fatty acid--CoA ligase [Hymenobacter sw... [more]
gi|1209960518|ref|WP_088464313.1|1.375e-9059.83long-chain fatty acid--CoA ligase [Hymenobacter sp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7642rna7642Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications