EWM23049.1, cds7622 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|585103859|gb|EWM23049.1| (medium-chain-fatty-acid- ligase (medium-chain acyl- synthetase) [Nannochloropsis gaditana]) HSP 1 Score: 576.63 bits (1485), Expect = 0.000e+0 Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query: 1 MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGVPPEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR 280
MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGVPPEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR
Sbjct: 1 MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGVPPEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR 280
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|553194324|ref|XP_005855929.1| (acyl-CoA synthetase [Nannochloropsis gaditana CCMP526] >gi|422293130|gb|EKU20430.1| acyl-CoA synthetase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 356.681 bits (914), Expect = 4.388e-118 Identity = 185/232 (79.74%), Postives = 185/232 (79.74%), Query Frame = 0
Query: 1 MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIV HAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTG IPYTAAMVGCKLVLPGSALDGASLYELMKEEGV
Sbjct: 1 MHGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVHHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTG----------------------------------------------IPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 186 HSP 2 Score: 106.301 bits (264), Expect = 2.042e-22 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0
Query: 234 PEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR 280
PEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR
Sbjct: 323 PEEGERDGGVRAGHQESFYTDDDGERWFLTGDVATICPDGYIKITDR 369
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1012141896|gb|KYP12566.1| (long-chain fatty acid--CoA ligase [Limnobacter sp. CACIAM 66H1]) HSP 1 Score: 292.352 bits (747), Expect = 2.084e-92 Identity = 134/229 (58.52%), Postives = 174/229 (75.98%), Query Frame = 0
Query: 4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
R+KKL N L ELGV++G+ +ATLA N YRH+E+Y+AVSG GAV+HTLNPRLF E L +I+ HA+D+++FFD FA L+ + P CP+VK W+ + DE MP P+++ NYEAL++ + YVWP L+E AS LCYTSGTTG PKG LYSHRSTVLH++AA PD+L +S+RDT+LP VP+FHVNAWGIPY A M G K+V+PG ALDGAS++EL++ E V
Sbjct: 48 RAKKLANTLTELGVQQGENIATLAWNGYRHVEIYYAVSGMGAVVHTLNPRLFPEQLVYIINHAKDTMVFFDSTFAPLIRAIAPACPTVKRWVQMCDEAVMPSEPAVA------GCLNYEALIKNASDQYVWPQLDENTASGLCYTSGTTGNPKGALYSHRSTVLHAMAACTPDALGLSSRDTILPVVPMFHVNAWGIPYIALMTGAKMVMPGGALDGASIFELLESEKV 270
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|149824834|gb|EDM84048.1| (acyl-CoA synthase [Limnobacter sp. MED105]) HSP 1 Score: 292.352 bits (747), Expect = 2.261e-92 Identity = 134/229 (58.52%), Postives = 175/229 (76.42%), Query Frame = 0
Query: 4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
R+KKL N L LGV++G+ +ATLA N YRH+E+Y+AVSG GAV+HTLNPRLF E L +I+ HA+D+++FFD FA L++ + P CP+VK W+ + DE MP +++ NYEAL+++ + YVWP L+E AAS LCYTSGTTG PKG LYSHRSTVLH++AA PD+L +S+RDT+LP VP+FHVNAWGIPY A M G K+V+PG ALDGAS+YEL++ E V
Sbjct: 43 RTKKLANTLTSLGVQQGENIATLAWNGYRHVEIYYAVSGMGAVVHTLNPRLFPEQLVYIINHAKDTMVFFDSTFAPLIKAIAPACPTVKRWVQMCDEAAMPAEQAVA------GCLNYEALIKDASDHYVWPQLDENAASGLCYTSGTTGNPKGALYSHRSTVLHAMAACTPDALGLSSRDTILPVVPMFHVNAWGIPYIALMTGAKMVMPGGALDGASIYELLESEKV 265
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1180278312|ref|WP_083797117.1| (long-chain fatty acid--CoA ligase [Limnobacter sp. MED105]) HSP 1 Score: 291.967 bits (746), Expect = 2.945e-92 Identity = 134/229 (58.52%), Postives = 175/229 (76.42%), Query Frame = 0
Query: 4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
R+KKL N L LGV++G+ +ATLA N YRH+E+Y+AVSG GAV+HTLNPRLF E L +I+ HA+D+++FFD FA L++ + P CP+VK W+ + DE MP +++ NYEAL+++ + YVWP L+E AAS LCYTSGTTG PKG LYSHRSTVLH++AA PD+L +S+RDT+LP VP+FHVNAWGIPY A M G K+V+PG ALDGAS+YEL++ E V
Sbjct: 44 RTKKLANTLTSLGVQQGENIATLAWNGYRHVEIYYAVSGMGAVVHTLNPRLFPEQLVYIINHAKDTMVFFDSTFAPLIKAIAPACPTVKRWVQMCDEAAMPAEQAVA------GCLNYEALIKDASDHYVWPQLDENAASGLCYTSGTTGNPKGALYSHRSTVLHAMAACTPDALGLSSRDTILPVVPMFHVNAWGIPYIALMTGAKMVMPGGALDGASIYELLESEKV 266
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|731478114|gb|AIZ64422.1| (long-chain fatty acid--CoA ligase [Hymenobacter sp. DG25B]) HSP 1 Score: 288.886 bits (738), Expect = 5.766e-91 Identity = 139/231 (60.17%), Postives = 166/231 (71.86%), Query Frame = 0
Query: 2 HGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
H RSK+L N L+ELG+ G+RV TLA NT+RH ELY+ +SG GAV HT+NPRLF E L +I+ HA+D ++FFD F LVERL P CP+V+ W+ + D MP +L + YE LL E++ WP+ +E ASSLCYTSGTT PKGVLYSHRSTVLHS AAALPD N SARD +LP VP+FHVNAWGIPY A M+GCKLVLPG LD ASLYEL + EGV
Sbjct: 46 HRRSKQLANALKELGINWGERVGTLAWNTHRHFELYYGISGMGAVCHTINPRLFPEQLVYIINHAEDRLIFFDLTFLPLVERLAPLCPTVEAWVLMTDRAHMPEATALPGE-----VRCYEDLLAAHNEEFTWPVFDENTASSLCYTSGTTDQPKGVLYSHRSTVLHSYAAALPDCFNCSARDVILPVVPMFHVNAWGIPYLAPMIGCKLVLPGPGLDAASLYELFENEGV 271
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1175474303|ref|WP_082017110.1| (long-chain fatty acid--CoA ligase [Hymenobacter sp. DG25B]) HSP 1 Score: 288.5 bits (737), Expect = 5.900e-91 Identity = 139/231 (60.17%), Postives = 166/231 (71.86%), Query Frame = 0
Query: 2 HGRSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
H RSK+L N L+ELG+ G+RV TLA NT+RH ELY+ +SG GAV HT+NPRLF E L +I+ HA+D ++FFD F LVERL P CP+V+ W+ + D MP +L + YE LL E++ WP+ +E ASSLCYTSGTT PKGVLYSHRSTVLHS AAALPD N SARD +LP VP+FHVNAWGIPY A M+GCKLVLPG LD ASLYEL + EGV
Sbjct: 42 HRRSKQLANALKELGINWGERVGTLAWNTHRHFELYYGISGMGAVCHTINPRLFPEQLVYIINHAEDRLIFFDLTFLPLVERLAPLCPTVEAWVLMTDRAHMPEATALPGE-----VRCYEDLLAAHNEEFTWPVFDENTASSLCYTSGTTDQPKGVLYSHRSTVLHSYAAALPDCFNCSARDVILPVVPMFHVNAWGIPYLAPMIGCKLVLPGPGLDAASLYELFENEGV 267
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|586954894|gb|AHJ96628.1| (AMP-dependent synthetase and ligase [Hymenobacter swuensis DY53]) HSP 1 Score: 288.115 bits (736), Expect = 8.706e-91 Identity = 139/229 (60.70%), Postives = 168/229 (73.36%), Query Frame = 0
Query: 4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
RS++L N L+ LG++ GDRV TLA NT+RH+ELY+AVSG+GAV HT NPRLF E L +I+ HA+D +LFFD F LVE+L P CP+V+ W+ + D MP +L +L YE LL +++ WP+ +E ASSLCYTSGTT PKGVLYSHRST+LHS AAALPD N SARD +LP VP+FHVNAWGIPY A MVGCKLVLPG LD ASLYEL + EGV
Sbjct: 44 RSRQLANALQRLGIRSGDRVGTLAWNTHRHLELYYAVSGSGAVCHTSNPRLFPEQLVYIINHAEDRLLFFDLTFLPLVEKLAPSCPTVEAWVLMTDRAHMPETTTLP------NLRCYEDLLAAESDEFEWPVFDENTASSLCYTSGTTDQPKGVLYSHRSTLLHSYAAALPDCFNCSARDVILPVVPMFHVNAWGIPYLAPMVGCKLVLPGPGLDAASLYELFETEGV 266
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1175220421|ref|WP_081768283.1| (long-chain fatty acid--CoA ligase [Hymenobacter swuensis]) HSP 1 Score: 288.115 bits (736), Expect = 1.096e-90 Identity = 139/229 (60.70%), Postives = 168/229 (73.36%), Query Frame = 0
Query: 4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
RS++L N L+ LG++ GDRV TLA NT+RH+ELY+AVSG+GAV HT NPRLF E L +I+ HA+D +LFFD F LVE+L P CP+V+ W+ + D MP +L +L YE LL +++ WP+ +E ASSLCYTSGTT PKGVLYSHRST+LHS AAALPD N SARD +LP VP+FHVNAWGIPY A MVGCKLVLPG LD ASLYEL + EGV
Sbjct: 49 RSRQLANALQRLGIRSGDRVGTLAWNTHRHLELYYAVSGSGAVCHTSNPRLFPEQLVYIINHAEDRLLFFDLTFLPLVEKLAPSCPTVEAWVLMTDRAHMPETTTLP------NLRCYEDLLAAESDEFEWPVFDENTASSLCYTSGTTDQPKGVLYSHRSTLLHSYAAALPDCFNCSARDVILPVVPMFHVNAWGIPYLAPMVGCKLVLPGPGLDAASLYELFETEGV 271
BLAST of EWM23049.1 vs. NCBI_GenBank
Match: gi|1209960518|ref|WP_088464313.1| (long-chain fatty acid--CoA ligase [Hymenobacter sp. CCM 8682] >gi|1209171467|gb|OWP63176.1| long-chain fatty acid--CoA ligase [Hymenobacter sp. CCM 8682]) HSP 1 Score: 287.73 bits (735), Expect = 1.375e-90 Identity = 137/229 (59.83%), Postives = 166/229 (72.49%), Query Frame = 0
Query: 4 RSKKLGNILEELGVKKGDRVATLAMNTYRHMELYFAVSGAGAVLHTLNPRLFAETLTWIVRHAQDSVLFFDPCFASLVERLLPHCPSVKHWICLVDEERMPVLPSLSPSSPFLSLHNYEALLREGKEDYVWPILEETAASSLCYTSGTTGPPKGVLYSHRSTVLHSLAAALPDSLNVSARDTVLPAVPLFHVNAWGIPYTAAMVGCKLVLPGSALDGASLYELMKEEGV 232
RS++L N L LG+ GDRV TLA NT+RH+ELY+AVSG+GAV HT+NPRLF E + +I+ HAQD +FFD F LVE+L HCP V+ W+ + D MP S+ +LH YE L+ DY WP+ +E ASSLCYTSGTT PKGVLYSHRST+LHS AAALPD N S++D +LP VP+FHVNAWGIPY A M+GCKLVLPG LD ASLYEL ++EGV
Sbjct: 44 RSRQLANALARLGIANGDRVGTLAWNTHRHLELYYAVSGSGAVCHTINPRLFPEQIVYIIGHAQDRAVFFDLTFLPLVEKLAAHCPGVEAWVLMSDRAHMP------ESTALPNLHCYEDLVAAENADYQWPVFDENTASSLCYTSGTTAEPKGVLYSHRSTLLHSFAAALPDCFNCSSQDVILPVVPMFHVNAWGIPYLAPMLGCKLVLPGPGLDAASLYELFEQEGV 266 The following BLAST results are available for this feature:
BLAST of EWM23049.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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