EWM23074.1, cds7599 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23074.1
Unique Name	cds7599
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002472.1:392956..393345 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23074.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101817g1.3765.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:392956..393345 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR016040	NAD(P)-bd_dom

Homology

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BLAST of EWM23074.1 vs. NCBI_GenBank
Match: gi|585103910|gb|EWM23074.1| (hypothetical protein Naga_101817g1 [Nannochloropsis gaditana])

HSP 1 Score: 261.151 bits (666), Expect = 2.547e-88
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query:    1 MRHRCLVRSSISSRRCHVAFCLFVSCPALAPSWDQSHHLSKLLRARMRSNGGKYLAFSSLPPFPARRGRKRVLIEGAGIAGLSLAYFLKRFLPETYEPLIVEKRKEGEVSVHNGRGEHGGRKRGYTASK 129
            MRHRCLVRSSISSRRCHVAFCLFVSCPALAPSWDQSHHLSKLLRARMRSNGGKYLAFSSLPPFPARRGRKRVLIEGAGIAGLSLAYFLKRFLPETYEPLIVEKRKEGEVSVHNGRGEHGGRKRGYTASK
Sbjct:    1 MRHRCLVRSSISSRRCHVAFCLFVSCPALAPSWDQSHHLSKLLRARMRSNGGKYLAFSSLPPFPARRGRKRVLIEGAGIAGLSLAYFLKRFLPETYEPLIVEKRKEGEVSVHNGRGEHGGRKRGYTASK 129

The following BLAST results are available for this feature:

BLAST of EWM23074.1 vs. NCBI_GenBank

BLAST of EWM23074.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585103910\|gb\|EWM23074.1\|	2.547e-88	100.00	hypothetical protein Naga_101817g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7619	rna7619	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications