rna7619, rna7619 (mRNA) Nannochloropsis gaditana

Overview
Namerna7619
Unique Namerna7619
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1239
Alignment locationCM002472.1:392760..393568 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101817g1.3765.mrna
Orig protein idgnl|cribi|Naga_101817g1.3765
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:392760..393568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101817g1gene7377Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23074.1cds7599Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7619rna7619-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7619 ID=rna7619|Name=rna7619|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
AAACCCCCACGCCAAGCCGCAGGAACCTCAGTACCCCTTGCCCAAGCCGA
CCTCCCCCTCCCACCCCCCCTACCCTGGCCTCCACCCGCCCCTCCCCGCC
CCGCACGACACTGCCTACTCCTCTTCCCTCAGCCCGCGCTGGCCCCCCCC
CCCGTCCCTCCCTCGGCACAGCCTCCGCTAGCGGGGACGGAGCAGCGGCC
TGCCCCGCACGAATCTCTGGAGATGCGAAGCTATGAACTTTCCGAGATGC
GAAGCCATGAATCTTCCGAGATGCAGGGCGCTGGCCACACTGGAGGCCAT
TCGCACGGGCACTACCACCACCACCACCACGGATACCATTCTCATCCTCC
CACCCGTTCACCTCCACACTCGCACCCAGCGCCAGCAAGCCTCCCTCCCA
CCTCCCACCCTGCCCCGCCCCTCCCCGCTCCCCGCCCACATTCCTCAGGC
CAGGTCCCGGGTATTCATGTACCCCATCCTCACCATTATCACCACCACCA
GCACCGTCGTTCCGGGTACGAACCGCCCGCTTGGGCTTCCCCTTCCCTCC
CTGGTGACCGCCGCGGGGACACGGGCGCGTTGGCGTTGCCGTCTGCCGCG
TCAAAGGCGTCGACTGCTGCACTGCCCACGACGTATTCCCCTCGTCAAAG
CCCCCGATCCGGCCCCGAAACGACCGCGGAAGCGGGTCCTCCTTGCCCTC
CCCACCCGCTCCTCTCCCACCGCGAGCGGACCTTGGCCTTGCGTTTGTTT
GAAACGCAAATTCAAAACGACGTTTCCTTCGCCCTTTTTCGGGGGGAAGC
GGACAAATCCACCCAGGCGGCTCGGGAGAACCTCCTCTTACGCGCCCGCA
CGCGGGACCCTACCCTCTTCCCTGTCCTGGAGAAAGCTTTGCTGCAAGGG
AAAAAGCCCCCTTTGCCCTTGTTGGTGGCCAAGCGGGCAGGGTGGGAGGG
CGGGGAGGCGGAGGCAAGCACGGTGGCCGCCGAGGCCCAGGAAGTGTTGG
TCTGGCATTTGCAAAACAAGGCGCTTCAGGTGCTGGTGGAAGTCTGGAAG
GAGGGGCAGAGGGAGGGGGGGAGGGAGGAGGGGAAAGAGCAGGGGGCGAC
GCGGCGGGAGAGGGAAGGGGAGGAGGAAGTCGATGGATTTTACATAACGG
AGGCGGGCAGAATGAAGGCGTTGGGAGAAGCCTCAGCGTTTGCGCGCCTG
AAGGGCGAAAAAGACACAGAAGTTAAGGTAGTGGAATGA
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protein sequence of rna7619

>rna7619-protein ID=rna7619-protein|Name=rna7619|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MRHRCLVRSSISSRRCHVAFCLFVSCPALAPSWDQSHHLSKLLRARMRSN
GGKYLAFSSLPPFPARRGRKRVLIEGAGIAGLSLAYFLKRFLPETYEPLI
VEKRKEGEVSVHNGRGEHGGRKRGYTASK
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mRNA from alignment at CM002472.1:392760..393568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7619 ID=rna7619|Name=rna7619|organism=Nannochloropsis gaditana|type=mRNA|length=809bp|location=Sequence derived from alignment at CM002472.1:392760..393568- (Nannochloropsis gaditana)
ACGTGTCAACGTACATTATTTTTGGGTGTCAATCAACTCTTGGTATTCTC
ATTAAGTGTGTTTTGATTCAACCAAACTTGCCGGATTCTTTGTTGTTGAT
AACCTCCCCACCCCCTTGCCTCAAAGCCAATGCACCATTTTTTAAGCCTG
ACCTGTAGACCATCACCATTTATATTCCGCAAACGCAATTTAGGGGCTTA
CAATACTTCATATTCTCCGCAAAATGCGTCACCGATGCCTGGTTCGCTCT
TCTATTTCGTCCAGGAGGTGCCATGTTGCTTTCTGCCTCTTTGTGTCATG
CCCAGCGCTTGCTCCTTCTTGGGATCAGAGTCACCATCTCTCAAAGCTTC
TGCGTGCTCGAATGCGTAGCAATGGCGGAAAATATCTTGCCTTCTCCTCC
TTGCCGCCTTTTCCTGCCCGCCGGGGTCGGAAACGGGTGCTGATCGAAGG
GGCGGGCATAGCGGGGCTGTCCTTAGCATATTTTTTGAAGCGTTTCTTAC
CAGAAACATACGAACCGCTCATCGTGGAAAAGCGAAAGGAGGGAGAGGTA
AGCGTGCACAATGGAAGAGGAGAGCATGGCGGCAGGAAGAGAGGGTATAC
GGCATCCAAATGAGGAAGAGGCAAAGAGGGGGAGGGAAGGAGGAAAGTGT
ATCCATTTCGTATAATGCGTGGTGAGTGAATGAACGTCGTTTTCCCCGTA
GTCTTTCATCTTCTCTTTATTGAAGCCCTCTTTGCAATATACCCAGCCGC
GTATTTCATGATCACCGCAGCTCAGGCAGCGGTAGGCTGACGGACCTCCC
CTTCCCACC
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Coding sequence (CDS) from alignment at CM002472.1:392760..393568-

>rna7619 ID=rna7619|Name=rna7619|organism=Nannochloropsis gaditana|type=CDS|length=390bp|location=Sequence derived from alignment at CM002472.1:392760..393568- (Nannochloropsis gaditana)
ATGCGTCACCGATGCCTGGTTCGCTCTTCTATTTCGTCCAGGAGGTGCCA
TGTTGCTTTCTGCCTCTTTGTGTCATGCCCAGCGCTTGCTCCTTCTTGGG
ATCAGAGTCACCATCTCTCAAAGCTTCTGCGTGCTCGAATGCGTAGCAAT
GGCGGAAAATATCTTGCCTTCTCCTCCTTGCCGCCTTTTCCTGCCCGCCG
GGGTCGGAAACGGGTGCTGATCGAAGGGGCGGGCATAGCGGGGCTGTCCT
TAGCATATTTTTTGAAGCGTTTCTTACCAGAAACATACGAACCGCTCATC
GTGGAAAAGCGAAAGGAGGGAGAGGTAAGCGTGCACAATGGAAGAGGAGA
GCATGGCGGCAGGAAGAGAGGGTATACGGCATCCAAATGA
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Synonyms
Publications