EWM23129.1, cds7549 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|585104007|gb|EWM23129.1| (Putative repair protein [Nannochloropsis gaditana]) HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0 Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0
Query: 1 MKFLVYFSLLEKGASLVGPLVELLTQKSMQPRNAPQGTTFKTFCLLWFLAGSGAFHVQPNARFSVVRDDSGILGSSRRGTLTTRKATEKSDHGGSNPFFAAHPPSTKSRHGFLGGLFSAGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEGEWNLKREAHLGGNDCKPIEITTIEYTSNAKQAML 329
MKFLVYFSLLEKGASLVGPLVELLTQKSMQPRNAPQGTTFKTFCLLWFLAGSGAFHVQPNARFSVVRDDSGILGSSRRGTLTTRKATEKSDHGGSNPFFAAHPPSTKSRHGFLGGLFSAGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEGEWNLKREAHLGGNDCKPIEITTIEYTSNAKQAML
Sbjct: 1 MKFLVYFSLLEKGASLVGPLVELLTQKSMQPRNAPQGTTFKTFCLLWFLAGSGAFHVQPNARFSVVRDDSGILGSSRRGTLTTRKATEKSDHGGSNPFFAAHPPSTKSRHGFLGGLFSAGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEGEWNLKREAHLGGNDCKPIEITTIEYTSNAKQAML 329
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|553184895|ref|XP_005854163.1| (hypothetical protein NGA_0170500 [Nannochloropsis gaditana CCMP526] >gi|422294896|gb|EKU22196.1| hypothetical protein NGA_0170500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 320.857 bits (821), Expect = 1.176e-107 Identity = 157/165 (95.15%), Postives = 159/165 (96.36%), Query Frame = 0
Query: 131 PVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEG 295
PV E ++PELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEG
Sbjct: 17 PVMGFWEDSSQPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEG 181
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|551653640|ref|XP_005829597.1| (hypothetical protein GUITHDRAFT_95599 [Guillardia theta CCMP2712] >gi|428173717|gb|EKX42617.1| hypothetical protein GUITHDRAFT_95599 [Guillardia theta CCMP2712]) HSP 1 Score: 187.963 bits (476), Expect = 2.260e-54 Identity = 86/158 (54.43%), Postives = 116/158 (73.42%), Query Frame = 0
Query: 136 PEGVNKPELLPK-ERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAE 292
PEGVN+P+LLP + NVIDLE+FLT GQ ++ + L LE+D+G K+R+LCQRYP TPGLAIKDYWG+DDK+IV+V D+G Q N+LNFNVG G++L LPP FW RLR+ FG++FY++ +G+D A+I ++ + C+R C DVPK E
Sbjct: 108 PEGVNRPDLLPPGPKVNVIDLEKFLTKGQVAKMDKLLAKLEEDTGYKMRVLCQRYPQTPGLAIKDYWGVDDKTIVMVVDRGSGKAGQA---NILNFNVGQGVELALPPVFWTRLRNFFGTVFYVKENGEDAAVINAVDAVVGCLRQGFCTDVPKEMKE 262
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|551619285|ref|XP_005790231.1| (hypothetical protein EMIHUDRAFT_440267 [Emiliania huxleyi CCMP1516] >gi|485643832|gb|EOD37802.1| hypothetical protein EMIHUDRAFT_440267 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 186.037 bits (471), Expect = 2.948e-54 Identity = 90/159 (56.60%), Postives = 116/159 (72.96%), Query Frame = 0
Query: 131 PVWARPEGVNKPELLPK-ERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLK-GCVDVP 287
P ARPEGVNKPELLP VIDL++FLTSG++ ++ QL +E ++G K+R+LCQ+YP+TPGLAIKDYWGLDDKSIV+VADKG T N+LNFNV G +L LP FW RL+S FG+ F+++ +G+D AI ++ ID C+R GCVDVP
Sbjct: 29 PALARPEGVNKPELLPTGPVQRVIDLQKFLTSGERTKMDTQLAKIEAETGFKLRVLCQQYPNTPGLAIKDYWGLDDKSIVLVADKGTK-----GTSNMLNFNVAEGAKLQLPNTFWTRLQSTFGNTFFVKENGEDVAIRRAVDAIDYCLREDLGCVDVP 182
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|299115162|emb|CBN75528.1| (thylakoid lumen 15.0 kDa protein [Ectocarpus siliculosus]) HSP 1 Score: 186.808 bits (473), Expect = 6.262e-54 Identity = 109/252 (43.25%), Postives = 156/252 (61.90%), Query Frame = 0
Query: 44 CLLWFLAGSGAFHVQPNARFSVVRDDSGILGSSRRGTLTTRKATEKSDHGGSNPFFAAHPPSTKSRHGFL----GGLFSAGLLTIGTFSLQPV--WARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKG--CVDVP 287
CL+ S FHV A +R +G S R ++ ++ G++P P T R G L GL AG+ ++ P+ AR GVN+P+LLPKE++NVIDL LT GQ KR+++QL+ LEK +G ++RLLCQ+YP+TPGLA+KDYW +DDK+IV+V D G + K A N+LNFNVG GL+L LPP FW RL++++G+ F++R +G D AII+ +++I C+R + CVD P
Sbjct: 11 CLVAIAPLSSGFHVPGPA----LRQQTGGSRSIGRAAGSSPVMMTAGNNDGTDP----SGPVT--RAGALQRAAAGLIGAGVALPALVAVAPLEAQARKAGVNRPDLLPKEQTNVIDLVSMLTKGQVKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDSGDDDRKSGAV-NILNFNVGDGLRLGLPPQFWQRLQNKYGNRFFVRDNGVDGAIISAVDSITLCLRSETGFCVDPP 251
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|545710217|ref|XP_005707417.1| (thylakoid lumen 15.0 kDa protein [Galdieria sulphuraria] >gi|452823890|gb|EME30897.1| thylakoid lumen 15.0 kDa protein [Galdieria sulphuraria]) HSP 1 Score: 178.718 bits (452), Expect = 2.016e-51 Identity = 95/184 (51.63%), Postives = 124/184 (67.39%), Query Frame = 0
Query: 101 AHPPSTKSRHGFLGGLFSAGLLT-IGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGC 283
H PS+ R L LF+ L+T +G+ S V RPEGVNKP LLPKE+ VIDLE +LTSGQ K L +Q++ LE+ SG K+R+L QRYPDTPGLAIKDYW LD +S+V+VAD + NLL FNVGS L LLPP +W+ L S++G+ F++ +G+D AI+ + I +CI KGC
Sbjct: 37 CHSPSSFQRRTLLRFLFAFPLITSVGSHS---VLGRPEGVNKPNLLPKEKKLVIDLEHYLTSGQLKSLERQIEDLERRSGFKLRVLTQRYPDTPGLAIKDYWQLDSRSVVMVADFFG------NSGNLLKFNVGSDLDGLLPPRYWSLLSSKYGNKFFVEQYGEDRAILDAADNIFSCILQKGC 211
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|219112511|ref|XP_002178007.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410892|gb|EEC50821.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 170.629 bits (431), Expect = 6.399e-48 Identity = 89/178 (50.00%), Postives = 117/178 (65.73%), Query Frame = 0
Query: 123 TIGTFSLQPVWARPEGVNKPELLPKERS-NVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGL------DDKSIVVVADKGPANIKQVATR-NLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKG--CVDVPKGA 290
T+ + P WAR E V++P+LLP E+ NVI E+FLTSGQ KR++ L ALE+D+G +VR+LCQ YP+TPGLAI+DYW L DDK +V+V D Q R N+LNFNVG GL+ LP FWNRL S++G+ FY+R +G D A+ I I TC+R + CV VP+ A
Sbjct: 70 TVAAGTTLPAWARLESVDRPDLLPAEKGVNVIQTEKFLTSGQAKRMNDLLVALERDTGFRVRVLCQSYPNTPGLAIRDYWDLGKEGQKDDKYVVLVVD-------QFGGRGNVLNFNVGDGLKFALPNVFWNRLSSKYGTTFYVRDNGIDLAVTNAIEAIVTCLRSEDQYCVSVPEEA 240
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|1210517863|dbj|GAX23264.1| (hypothetical protein FisN_21Hh051 [Fistulifera solaris]) HSP 1 Score: 166.007 bits (419), Expect = 2.258e-46 Identity = 93/200 (46.50%), Postives = 126/200 (63.00%), Query Frame = 0
Query: 104 PSTKSRHGFLGGLFSAG--LLTIGTFSLQPVWARPEGVNKPELLPKERS-NVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGL------DDKSIVVVADK--GPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKG--CVDVPKGA 290
P+T SR + S G ++T T P +AR E VN+P+LLP E NVI E+FLT+GQ +R++ L ALE+D+G +VR+LCQ YP+TPGLAI+DYW L DDK IV+V D+ G N+ LNFNVG G++L LP FW RL+++FG+ FY+R +G D AI + I TC+R + CV+VP A
Sbjct: 25 PNT-SRRTVIASWISGGAAVVTGATTLASPAYARLEAVNRPDLLPTEAGLNVIQTEKFLTAGQARRMNDLLKALERDTGFRVRVLCQAYPNTPGLAIRDYWDLGKEGQKDDKYIVLVVDQFGGKGNV--------LNFNVGGGVKLNLPNVFWTRLQAKFGNTFYVRDNGIDLAITNAVEAITTCLRSEDQYCVNVPDEA 215
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|1009160516|ref|XP_015898393.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 165.236 bits (417), Expect = 3.310e-46 Identity = 83/161 (51.55%), Postives = 114/161 (70.81%), Query Frame = 0
Query: 119 AGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIR 279
+G +T G FSL V A EGVNKPELLPKE S VID+ FL+ GQ+KRL+Q++D +EKD+G K+R+L Q YPDTPGLAIKD+W +DD++IV VAD NI LNFNVG+ + L +P +FW+RL ++G++FY + G+D +I A + I C++
Sbjct: 51 SGAITFG-FSLA-VLAAKEGVNKPELLPKEFSPVIDVAGFLSDGQEKRLAQEIDDIEKDTGFKLRVLAQNYPDTPGLAIKDFWQVDDRTIVFVADPTFGNI--------LNFNVGASVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVMAISDCLK 201
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|502122005|ref|XP_004497532.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cicer arietinum]) HSP 1 Score: 165.622 bits (418), Expect = 4.067e-46 Identity = 85/174 (48.85%), Postives = 115/174 (66.09%), Query Frame = 0
Query: 106 TKSRHGFLGGLFSAGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIR 279
+K H L G S L GT Q A GVNKPELLPKE S VID+ FL+ GQ+KRL+Q++ ALEKD G+K+R+L Q YPDTPGLA+KD+W +DD+++V VAD NI LNFNVG+ + L +P +FW+RL ++G+IFY R G+D +I + + I +C+R
Sbjct: 58 SKPLHFALSGALSLCLFFGGT---QLAEAAKAGVNKPELLPKEFSTVIDVAGFLSEGQEKRLAQEIAALEKDVGVKLRVLAQNYPDTPGLAVKDFWQVDDRTVVFVADPTFGNI--------LNFNVGASVDLDIPRSFWSRLAGKYGNIFYWREKGEDASIESAVMAISSCLR 220 The following BLAST results are available for this feature:
BLAST of EWM23129.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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