EWM23129.1, cds7549 (CDS) Nannochloropsis gaditana

Overview
NameEWM23129.1
Unique Namecds7549
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:266308..266349 +
Alignment locationCM002472.1:266735..267050 +
Alignment locationCM002472.1:267251..267318 +
Alignment locationCM002472.1:267466..267602 +
Alignment locationCM002472.1:267708..267871 +
Alignment locationCM002472.1:268158..268315 +
Alignment locationCM002472.1:268416..268520 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23129.1
ProductPutative repair protein
Orig transcript idgnl|cribi|Naga_100229g2.2606.mrna
Geneoec
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:266308..266349 +
CM002472.1supercontigCM002472.1:266735..267050 +
CM002472.1supercontigCM002472.1:267251..267318 +
CM002472.1supercontigCM002472.1:267466..267602 +
CM002472.1supercontigCM002472.1:267708..267871 +
CM002472.1supercontigCM002472.1:268158..268315 +
CM002472.1supercontigCM002472.1:268416..268520 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007621TPM_domain
Homology
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|585104007|gb|EWM23129.1| (Putative repair protein [Nannochloropsis gaditana])

HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0
Query:    1 MKFLVYFSLLEKGASLVGPLVELLTQKSMQPRNAPQGTTFKTFCLLWFLAGSGAFHVQPNARFSVVRDDSGILGSSRRGTLTTRKATEKSDHGGSNPFFAAHPPSTKSRHGFLGGLFSAGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEGEWNLKREAHLGGNDCKPIEITTIEYTSNAKQAML 329
            MKFLVYFSLLEKGASLVGPLVELLTQKSMQPRNAPQGTTFKTFCLLWFLAGSGAFHVQPNARFSVVRDDSGILGSSRRGTLTTRKATEKSDHGGSNPFFAAHPPSTKSRHGFLGGLFSAGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEGEWNLKREAHLGGNDCKPIEITTIEYTSNAKQAML
Sbjct:    1 MKFLVYFSLLEKGASLVGPLVELLTQKSMQPRNAPQGTTFKTFCLLWFLAGSGAFHVQPNARFSVVRDDSGILGSSRRGTLTTRKATEKSDHGGSNPFFAAHPPSTKSRHGFLGGLFSAGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEGEWNLKREAHLGGNDCKPIEITTIEYTSNAKQAML 329          
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|553184895|ref|XP_005854163.1| (hypothetical protein NGA_0170500 [Nannochloropsis gaditana CCMP526] >gi|422294896|gb|EKU22196.1| hypothetical protein NGA_0170500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 320.857 bits (821), Expect = 1.176e-107
Identity = 157/165 (95.15%), Postives = 159/165 (96.36%), Query Frame = 0
Query:  131 PVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEG 295
            PV    E  ++PELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEG
Sbjct:   17 PVMGFWEDSSQPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAEEEG 181          
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|551653640|ref|XP_005829597.1| (hypothetical protein GUITHDRAFT_95599 [Guillardia theta CCMP2712] >gi|428173717|gb|EKX42617.1| hypothetical protein GUITHDRAFT_95599 [Guillardia theta CCMP2712])

HSP 1 Score: 187.963 bits (476), Expect = 2.260e-54
Identity = 86/158 (54.43%), Postives = 116/158 (73.42%), Query Frame = 0
Query:  136 PEGVNKPELLPK-ERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGCVDVPKGAAE 292
            PEGVN+P+LLP   + NVIDLE+FLT GQ  ++ + L  LE+D+G K+R+LCQRYP TPGLAIKDYWG+DDK+IV+V D+G     Q    N+LNFNVG G++L LPP FW RLR+ FG++FY++ +G+D A+I  ++ +  C+R   C DVPK   E
Sbjct:  108 PEGVNRPDLLPPGPKVNVIDLEKFLTKGQVAKMDKLLAKLEEDTGYKMRVLCQRYPQTPGLAIKDYWGVDDKTIVMVVDRGSGKAGQA---NILNFNVGQGVELALPPVFWTRLRNFFGTVFYVKENGEDAAVINAVDAVVGCLRQGFCTDVPKEMKE 262          
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|551619285|ref|XP_005790231.1| (hypothetical protein EMIHUDRAFT_440267 [Emiliania huxleyi CCMP1516] >gi|485643832|gb|EOD37802.1| hypothetical protein EMIHUDRAFT_440267 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 186.037 bits (471), Expect = 2.948e-54
Identity = 90/159 (56.60%), Postives = 116/159 (72.96%), Query Frame = 0
Query:  131 PVWARPEGVNKPELLPK-ERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLK-GCVDVP 287
            P  ARPEGVNKPELLP      VIDL++FLTSG++ ++  QL  +E ++G K+R+LCQ+YP+TPGLAIKDYWGLDDKSIV+VADKG        T N+LNFNV  G +L LP  FW RL+S FG+ F+++ +G+D AI   ++ ID C+R   GCVDVP
Sbjct:   29 PALARPEGVNKPELLPTGPVQRVIDLQKFLTSGERTKMDTQLAKIEAETGFKLRVLCQQYPNTPGLAIKDYWGLDDKSIVLVADKGTK-----GTSNMLNFNVAEGAKLQLPNTFWTRLQSTFGNTFFVKENGEDVAIRRAVDAIDYCLREDLGCVDVP 182          
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|299115162|emb|CBN75528.1| (thylakoid lumen 15.0 kDa protein [Ectocarpus siliculosus])

HSP 1 Score: 186.808 bits (473), Expect = 6.262e-54
Identity = 109/252 (43.25%), Postives = 156/252 (61.90%), Query Frame = 0
Query:   44 CLLWFLAGSGAFHVQPNARFSVVRDDSGILGSSRRGTLTTRKATEKSDHGGSNPFFAAHPPSTKSRHGFL----GGLFSAGLLTIGTFSLQPV--WARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKG--CVDVP 287
            CL+     S  FHV   A    +R  +G   S  R   ++       ++ G++P      P T  R G L     GL  AG+      ++ P+   AR  GVN+P+LLPKE++NVIDL   LT GQ KR+++QL+ LEK +G ++RLLCQ+YP+TPGLA+KDYW +DDK+IV+V D G  + K  A  N+LNFNVG GL+L LPP FW RL++++G+ F++R +G D AII+ +++I  C+R +   CVD P
Sbjct:   11 CLVAIAPLSSGFHVPGPA----LRQQTGGSRSIGRAAGSSPVMMTAGNNDGTDP----SGPVT--RAGALQRAAAGLIGAGVALPALVAVAPLEAQARKAGVNRPDLLPKEQTNVIDLVSMLTKGQVKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDSGDDDRKSGAV-NILNFNVGDGLRLGLPPQFWQRLQNKYGNRFFVRDNGVDGAIISAVDSITLCLRSETGFCVDPP 251          
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|545710217|ref|XP_005707417.1| (thylakoid lumen 15.0 kDa protein [Galdieria sulphuraria] >gi|452823890|gb|EME30897.1| thylakoid lumen 15.0 kDa protein [Galdieria sulphuraria])

HSP 1 Score: 178.718 bits (452), Expect = 2.016e-51
Identity = 95/184 (51.63%), Postives = 124/184 (67.39%), Query Frame = 0
Query:  101 AHPPSTKSRHGFLGGLFSAGLLT-IGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKGC 283
             H PS+  R   L  LF+  L+T +G+ S   V  RPEGVNKP LLPKE+  VIDLE +LTSGQ K L +Q++ LE+ SG K+R+L QRYPDTPGLAIKDYW LD +S+V+VAD          + NLL FNVGS L  LLPP +W+ L S++G+ F++  +G+D AI+   + I +CI  KGC
Sbjct:   37 CHSPSSFQRRTLLRFLFAFPLITSVGSHS---VLGRPEGVNKPNLLPKEKKLVIDLEHYLTSGQLKSLERQIEDLERRSGFKLRVLTQRYPDTPGLAIKDYWQLDSRSVVMVADFFG------NSGNLLKFNVGSDLDGLLPPRYWSLLSSKYGNKFFVEQYGEDRAILDAADNIFSCILQKGC 211          
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|219112511|ref|XP_002178007.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410892|gb|EEC50821.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 170.629 bits (431), Expect = 6.399e-48
Identity = 89/178 (50.00%), Postives = 117/178 (65.73%), Query Frame = 0
Query:  123 TIGTFSLQPVWARPEGVNKPELLPKERS-NVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGL------DDKSIVVVADKGPANIKQVATR-NLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKG--CVDVPKGA 290
            T+   +  P WAR E V++P+LLP E+  NVI  E+FLTSGQ KR++  L ALE+D+G +VR+LCQ YP+TPGLAI+DYW L      DDK +V+V D       Q   R N+LNFNVG GL+  LP  FWNRL S++G+ FY+R +G D A+   I  I TC+R +   CV VP+ A
Sbjct:   70 TVAAGTTLPAWARLESVDRPDLLPAEKGVNVIQTEKFLTSGQAKRMNDLLVALERDTGFRVRVLCQSYPNTPGLAIRDYWDLGKEGQKDDKYVVLVVD-------QFGGRGNVLNFNVGDGLKFALPNVFWNRLSSKYGTTFYVRDNGIDLAVTNAIEAIVTCLRSEDQYCVSVPEEA 240          
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|1210517863|dbj|GAX23264.1| (hypothetical protein FisN_21Hh051 [Fistulifera solaris])

HSP 1 Score: 166.007 bits (419), Expect = 2.258e-46
Identity = 93/200 (46.50%), Postives = 126/200 (63.00%), Query Frame = 0
Query:  104 PSTKSRHGFLGGLFSAG--LLTIGTFSLQPVWARPEGVNKPELLPKERS-NVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGL------DDKSIVVVADK--GPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIRLKG--CVDVPKGA 290
            P+T SR   +    S G  ++T  T    P +AR E VN+P+LLP E   NVI  E+FLT+GQ +R++  L ALE+D+G +VR+LCQ YP+TPGLAI+DYW L      DDK IV+V D+  G  N+        LNFNVG G++L LP  FW RL+++FG+ FY+R +G D AI   +  I TC+R +   CV+VP  A
Sbjct:   25 PNT-SRRTVIASWISGGAAVVTGATTLASPAYARLEAVNRPDLLPTEAGLNVIQTEKFLTAGQARRMNDLLKALERDTGFRVRVLCQAYPNTPGLAIRDYWDLGKEGQKDDKYIVLVVDQFGGKGNV--------LNFNVGGGVKLNLPNVFWTRLQAKFGNTFYVRDNGIDLAITNAVEAITTCLRSEDQYCVNVPDEA 215          
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|1009160516|ref|XP_015898393.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 165.236 bits (417), Expect = 3.310e-46
Identity = 83/161 (51.55%), Postives = 114/161 (70.81%), Query Frame = 0
Query:  119 AGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIR 279
            +G +T G FSL  V A  EGVNKPELLPKE S VID+  FL+ GQ+KRL+Q++D +EKD+G K+R+L Q YPDTPGLAIKD+W +DD++IV VAD    NI        LNFNVG+ + L +P +FW+RL  ++G++FY +  G+D +I A +  I  C++
Sbjct:   51 SGAITFG-FSLA-VLAAKEGVNKPELLPKEFSPVIDVAGFLSDGQEKRLAQEIDDIEKDTGFKLRVLAQNYPDTPGLAIKDFWQVDDRTIVFVADPTFGNI--------LNFNVGASVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVMAISDCLK 201          
BLAST of EWM23129.1 vs. NCBI_GenBank
Match: gi|502122005|ref|XP_004497532.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cicer arietinum])

HSP 1 Score: 165.622 bits (418), Expect = 4.067e-46
Identity = 85/174 (48.85%), Postives = 115/174 (66.09%), Query Frame = 0
Query:  106 TKSRHGFLGGLFSAGLLTIGTFSLQPVWARPEGVNKPELLPKERSNVIDLERFLTSGQKKRLSQQLDALEKDSGIKVRLLCQRYPDTPGLAIKDYWGLDDKSIVVVADKGPANIKQVATRNLLNFNVGSGLQLLLPPAFWNRLRSQFGSIFYLRSHGDDEAIIATINTIDTCIR 279
            +K  H  L G  S  L   GT   Q   A   GVNKPELLPKE S VID+  FL+ GQ+KRL+Q++ ALEKD G+K+R+L Q YPDTPGLA+KD+W +DD+++V VAD    NI        LNFNVG+ + L +P +FW+RL  ++G+IFY R  G+D +I + +  I +C+R
Sbjct:   58 SKPLHFALSGALSLCLFFGGT---QLAEAAKAGVNKPELLPKEFSTVIDVAGFLSEGQEKRLAQEIAALEKDVGVKLRVLAQNYPDTPGLAVKDFWQVDDRTVVFVADPTFGNI--------LNFNVGASVDLDIPRSFWSRLAGKYGNIFYWREKGEDASIESAVMAISSCLR 220          
The following BLAST results are available for this feature:
BLAST of EWM23129.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104007|gb|EWM23129.1|0.000e+0100.00Putative repair protein [Nannochloropsis gaditana][more]
gi|553184895|ref|XP_005854163.1|1.176e-10795.15hypothetical protein NGA_0170500 [Nannochloropsis ... [more]
gi|551653640|ref|XP_005829597.1|2.260e-5454.43hypothetical protein GUITHDRAFT_95599 [Guillardia ... [more]
gi|551619285|ref|XP_005790231.1|2.948e-5456.60hypothetical protein EMIHUDRAFT_440267 [Emiliania ... [more]
gi|299115162|emb|CBN75528.1|6.262e-5443.25thylakoid lumen 15.0 kDa protein [Ectocarpus silic... [more]
gi|545710217|ref|XP_005707417.1|2.016e-5151.63thylakoid lumen 15.0 kDa protein [Galdieria sulphu... [more]
gi|219112511|ref|XP_002178007.1|6.399e-4850.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210517863|dbj|GAX23264.1|2.258e-4646.50hypothetical protein FisN_21Hh051 [Fistulifera sol... [more]
gi|1009160516|ref|XP_015898393.1|3.310e-4651.55PREDICTED: thylakoid lumenal 15.0 kDa protein 2, c... [more]
gi|502122005|ref|XP_004497532.1|4.067e-4648.85PREDICTED: thylakoid lumenal 15.0 kDa protein 2, c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7569rna7569Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications