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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100043g3.7240.mrna |
| Orig protein id | gnl|cribi|Naga_100043g3.7240 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002472.1 | supercontig | CM002472.1:145927..147759 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7518 ID=rna7518|Name=rna7518|organism=Nannochloropsis gaditana|type=mRNA|length=1537bp
GCGCCAGTTGAATCGCGACAACTCACCTCCATTCTAAGACTTACCTTCTC
TCGCATCTTGTTTTGATAGATTGCATAGCCGCATGACGACAAAGGATCAC
CGAAGACCTCAAGACTTTGGGTGCGAGCAGCACGACAGGAAGAGATGGCG
TCCGTCAGCGGTGGCTGCACTATCTTTAGGAGCTCTGTTCCTGTTTCTTA
ATTCAGCGCCCACGTCCGCATTTGTAATAAAATGTAGGCCAAGAAGAAGC
ATTCTTCAGAAGGAAAACGCTTTACTTTTGTGTGGGTTCACTCTCGAGAG
CATCAGCAGTAGTAGATGTTTAGGTGTTAGGGGGGGACGGAGGAAGGCGC
AAGGCGTTTTACCGGCAATTTCTCAAGGGGAAGATGGCGCGGAGAAAAGC
AGAGAGGGAAAAAAAGCGGCATCTGGAGGAAAGAAAGCTTCGGGGCCCAA
GAGTAAGCGAGGAGCAAGCAGCAGCAAGTCCAGTCCTCCTCCCATGCCGT
CCTCTGCCACCTCCTCATCGGCAGACTCAGGCAAACCATCCGCGGCCCCC
CAAAAGGTACAGAAAGGGAAGCGGAAAGTCAAAGAGCAGGTCCCGGCTCC
CTTCTTCGACGAAGCGCTTTTGGACGGGTCTCGGGCGAGAGATGTATACA
CTGGAGAGCAGAAATTCAACCTGATGGGTCAGAGCGAGGACGTGATAGCG
CCCTGGAGCGTTGATGGCTTCGAGATCGACCTGCCCGACTGGCGCCCCCA
GCCTGCGCAGCGCTACCGCATCGTGGATCCCGCCGTCATGGAGCAGCTTG
GGAAGATCGAGAATATGTTCGGGGCGTCCTTGCGTCTGGTCTCCACCGAG
GACGGGATCTGGCGTTTCCTGTACAGTGGAAACGTCAGGAACCTGATCGG
AGCCGAGGCCTGGACGAAGCTGTTGCTCATCGAGGACTTGAAGATAGCGG
GGGTGAGGGAAGTGCGCTTCGAGACAAACTATGTGCGTGACTGGCCGGAT
GATCATAACTAGAAAGGGATGGCGGGGAGTGCACGGGCGGGGTTCGTGTT
GATTTTGGGATGAGATCACCATCAAATACGGCGCGAATAGGGAGGGAGCC
GTGCATCTTGCAGCAGGGACTTTAAAAAAAAAGTATGATATTAACGAATT
AGATGCGAGAAGATTAATCTGGTATCGCCTCGGAGCATAGTGGCCGAGTA
GGGCATTGCTTGATAGGGGATACATCATGTAGTGTTCTTCGCCGACTCTT
TGATCATGTTTCGCCCGATTACTGCGCTCTGTGGTCGGTCACGAGCCACA
CGATGGCGTGATATATTTCCAAAGCCTCTGATTTCATAAAGCGAAAGAGT
AGGTCTGGAATGGGCAGCACTGGGTGTCTGGCCCCAGTCCACACGTCTTA
CAAATCCGGCTGACCCGAGAGCCCGCGACATGATGGCGAGCAGCAATTTA
TGCTTTGAAAGTGAAGAAGTGATCTTTTGACAATAAATGCTCATCTGAAA
TAACCACGTCAGTCCCAAACTCAAAACACAAGATTTC back to topprotein sequence of rna7518 >rna7518-protein ID=rna7518-protein|Name=rna7518|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
MRDHGHPVAHAGNFDRLIACCRTHTSTFMSQNIILNNSETTGALFLFLNS
APTSAFVIKCRPRRSILQKENALLLCGFTLESISSSRCLGVRGGRRKAQG
VLPAISQGEDGAEKSREGKKAASGGKKASGPKSKRGASSSKSSPPPMPSS
ATSSSADSGKPSAAPQKVQKGKRKVKEQVPAPFFDEALLDGSRARDVYTG
EQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGK
IENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGV
REVRFETNYVRDWPDDHN back to topmRNA from alignment at CM002472.1:145927..147759- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna7518 ID=rna7518|Name=rna7518|organism=Nannochloropsis gaditana|type=mRNA|length=1833bp|location=Sequence derived from alignment at CM002472.1:145927..147759- (Nannochloropsis gaditana)
GCGCCAGTTGAATCGCGACAACTCACCTCCATTCTAAGACTTACCTTCTC
TCGCATCTTGTTTTGATAGATTGCATAGCCGCATGACGACAAAGGATCAC
CGAAGACCTCAAGACTTTGGGTGCGAGCAGCACGACAGGAAGAGATGGCG
TCCGTCAGCGGTGGCTGCACTATCTTTAGGTAAGTCATAGCGCAGACCTA
TCCTATCCTAACGCAGGATTTATCTTCCGCAGAGGCATGAAAAACATTGA
GATACGTTGAGTCATTTTTCGGAACATTGTGTAATCGAGGGAATTGGTCG
GGGCGTTAAGGCACGTCCGTGTCCGCAGACTATCGTATTCTTCCAGTCCC
CATGCGCGATCACGGTCACCCAGTTGCGCACGCAGGGAATTTTGACAGAT
TGATTGCATGTTGTAGGACACATACGAGTACGTTTATGTCCCAAAACATT
ATCTTGAACAACTCGGAAACCACAGGAGCTCTGTTCCTGTTTCTTAATTC
AGCGCCCACGTCCGCATTTGTAATAAAATGTAGGCCAAGAAGAAGCATTC
TTCAGAAGGAAAACGCTTTACTTTTGTGTGGGTTCACTCTCGAGAGCATC
AGCAGTAGTAGATGTTTAGGTGTTAGGGGGGGACGGAGGAAGGCGCAAGG
CGTTTTACCGGCAATTTCTCAAGGGGAAGATGGCGCGGAGAAAAGCAGAG
AGGGAAAAAAAGCGGCATCTGGAGGAAAGAAAGCTTCGGGGCCCAAGAGT
AAGCGAGGAGCAAGCAGCAGCAAGTCCAGTCCTCCTCCCATGCCGTCCTC
TGCCACCTCCTCATCGGCAGACTCAGGCAAACCATCCGCGGCCCCCCAAA
AGGTACAGAAAGGGAAGCGGAAAGTCAAAGAGCAGGTCCCGGCTCCCTTC
TTCGACGAAGCGCTTTTGGACGGGTCTCGGGCGAGAGATGTATACACTGG
AGAGCAGAAATTCAACCTGATGGGTCAGAGCGAGGACGTGATAGCGCCCT
GGAGCGTTGATGGCTTCGAGATCGACCTGCCCGACTGGCGCCCCCAGCCT
GCGCAGCGCTACCGCATCGTGGATCCCGCCGTCATGGAGCAGCTTGGGAA
GATCGAGAATATGTTCGGGGCGTCCTTGCGTCTGGTCTCCACCGAGGACG
GGATCTGGCGTTTCCTGTACAGTGGAAACGTCAGGAACCTGATCGGAGCC
GAGGCCTGGACGAAGCTGTTGCTCATCGAGGACTTGAAGATAGCGGGGGT
GAGGGAAGTGCGCTTCGAGACAAACTATGTGCGTGACTGGCCGGATGATC
ATAACTAGAAAGGGATGGCGGGGAGTGCACGGGCGGGGTTCGTGTTGATT
TTGGGATGAGATCACCATCAAATACGGCGCGAATAGGGAGGGAGCCGTGC
ATCTTGCAGCAGGGACTTTAAAAAAAAAGTATGATATTAACGAATTAGAT
GCGAGAAGATTAATCTGGTATCGCCTCGGAGCATAGTGGCCGAGTAGGGC
ATTGCTTGATAGGGGATACATCATGTAGTGTTCTTCGCCGACTCTTTGAT
CATGTTTCGCCCGATTACTGCGCTCTGTGGTCGGTCACGAGCCACACGAT
GGCGTGATATATTTCCAAAGCCTCTGATTTCATAAAGCGAAAGAGTAGGT
CTGGAATGGGCAGCACTGGGTGTCTGGCCCCAGTCCACACGTCTTACAAA
TCCGGCTGACCCGAGAGCCCGCGACATGATGGCGAGCAGCAATTTATGCT
TTGAAAGTGAAGAAGTGATCTTTTGACAATAAATGCTCATCTGAAATAAC
CACGTCAGTCCCAAACTCAAAACACAAGATTTC back to topCoding sequence (CDS) from alignment at CM002472.1:145927..147759- >rna7518 ID=rna7518|Name=rna7518|organism=Nannochloropsis gaditana|type=CDS|length=957bp|location=Sequence derived from alignment at CM002472.1:145927..147759- (Nannochloropsis gaditana)
ATGCGCGATCACGGTCACCCAGTTGCGCACGCAGGGAATTTTGACAGATT
GATTGCATGTTGTAGGACACATACGAGTACGTTTATGTCCCAAAACATTA
TCTTGAACAACTCGGAAACCACAGGAGCTCTGTTCCTGTTTCTTAATTCA
GCGCCCACGTCCGCATTTGTAATAAAATGTAGGCCAAGAAGAAGCATTCT
TCAGAAGGAAAACGCTTTACTTTTGTGTGGGTTCACTCTCGAGAGCATCA
GCAGTAGTAGATGTTTAGGTGTTAGGGGGGGACGGAGGAAGGCGCAAGGC
GTTTTACCGGCAATTTCTCAAGGGGAAGATGGCGCGGAGAAAAGCAGAGA
GGGAAAAAAAGCGGCATCTGGAGGAAAGAAAGCTTCGGGGCCCAAGAGTA
AGCGAGGAGCAAGCAGCAGCAAGTCCAGTCCTCCTCCCATGCCGTCCTCT
GCCACCTCCTCATCGGCAGACTCAGGCAAACCATCCGCGGCCCCCCAAAA
GGTACAGAAAGGGAAGCGGAAAGTCAAAGAGCAGGTCCCGGCTCCCTTCT
TCGACGAAGCGCTTTTGGACGGGTCTCGGGCGAGAGATGTATACACTGGA
GAGCAGAAATTCAACCTGATGGGTCAGAGCGAGGACGTGATAGCGCCCTG
GAGCGTTGATGGCTTCGAGATCGACCTGCCCGACTGGCGCCCCCAGCCTG
CGCAGCGCTACCGCATCGTGGATCCCGCCGTCATGGAGCAGCTTGGGAAG
ATCGAGAATATGTTCGGGGCGTCCTTGCGTCTGGTCTCCACCGAGGACGG
GATCTGGCGTTTCCTGTACAGTGGAAACGTCAGGAACCTGATCGGAGCCG
AGGCCTGGACGAAGCTGTTGCTCATCGAGGACTTGAAGATAGCGGGGGTG
AGGGAAGTGCGCTTCGAGACAAACTATGTGCGTGACTGGCCGGATGATCA
TAACTAG back to top
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