EWM23157.1, cds7500 (CDS) Nannochloropsis gaditana

Overview
NameEWM23157.1
Unique Namecds7500
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:146452..147408 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23157.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100043g3.7240.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:146452..147408 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23157.1 vs. NCBI_GenBank
Match: gi|585104038|gb|EWM23157.1| (hypothetical protein Naga_100043g3 [Nannochloropsis gaditana])

HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0 
Query:    1 MRDHGHPVAHAGNFDRLIACCRTHTSTFMSQNIILNNSETTGALFLFLNSAPTSAFVIKCRPRRSILQKENALLLCGFTLESISSSRCLGVRGGRRKAQGVLPAISQGEDGAEKSREGKKAASGGKKASGPKSKRGASSSKSSPPPMPSSATSSSADSGKPSAAPQKVQKGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN 318
            MRDHGHPVAHAGNFDRLIACCRTHTSTFMSQNIILNNSETTGALFLFLNSAPTSAFVIKCRPRRSILQKENALLLCGFTLESISSSRCLGVRGGRRKAQGVLPAISQGEDGAEKSREGKKAASGGKKASGPKSKRGASSSKSSPPPMPSSATSSSADSGKPSAAPQKVQKGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN
Sbjct:    1 MRDHGHPVAHAGNFDRLIACCRTHTSTFMSQNIILNNSETTGALFLFLNSAPTSAFVIKCRPRRSILQKENALLLCGFTLESISSSRCLGVRGGRRKAQGVLPAISQGEDGAEKSREGKKAASGGKKASGPKSKRGASSSKSSPPPMPSSATSSSADSGKPSAAPQKVQKGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN 318
[Close]
BLAST of EWM23157.1 vs. NCBI_GenBank
Match: gi|585104037|gb|EWM23156.1| (hypothetical protein Naga_100043g3 [Nannochloropsis gaditana])

HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 277/279 (99.28%), Postives = 278/279 (99.64%), Query Frame = 0 
Query:   40 TTGALFLFLNSAPTSAFVIKCRPRRSILQKENALLLCGFTLESISSSRCLGVRGGRRKAQGVLPAISQGEDGAEKSREGKKAASGGKKASGPKSKRGASSSKSSPPPMPSSATSSSADSGKPSAAPQKVQKGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN 318
            + GALFLFLNSAPTSAFVIKCRPRRSILQKENALLLCGFTLESISSSRCLGVRGGRRKAQGVLPAISQGEDGAEKSREGKKAASGGKKASGPKSKRGASSSKSSPPPMPSSATSSSADSGKPSAAPQKVQKGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN
Sbjct:   31 SLGALFLFLNSAPTSAFVIKCRPRRSILQKENALLLCGFTLESISSSRCLGVRGGRRKAQGVLPAISQGEDGAEKSREGKKAASGGKKASGPKSKRGASSSKSSPPPMPSSATSSSADSGKPSAAPQKVQKGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN 309
The following BLAST results are available for this feature:
BLAST of EWM23157.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104038|gb|EWM23157.1|0.000e+0100.00hypothetical protein Naga_100043g3 [Nannochloropsi... [more]
gi|585104037|gb|EWM23156.1|0.000e+099.28hypothetical protein Naga_100043g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7518rna7518Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications