rna7512, rna7512 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7512
Unique Name	rna7512
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	781
Alignment location	CM002472.1:132656..133625 -

Link to JBrowse

Properties


Property Name	Value
Product	2-c-methyl-d-erythritol -cyclodiphosphate synthase
Orig transcript id	gnl\|cribi\|Naga_100484g5.2349.mrna
Orig protein id	gnl\|cribi\|Naga_100484g5.2349
Gene	MCS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:132656..133625 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MCS	gene7272	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23179.1	cds7494	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7512	rna7512-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:132656..133625-
coding sequence from alignment at CM002472.1:132656..133625-

mRNA sequence

>rna7512 ID=rna7512|Name=rna7512|organism=Nannochloropsis gaditana|type=mRNA|length=781bp
CCGCGAGCGGCTCTCCTTCTTCGTCGCGCTCGTCTTTGCGCCCTCCGTGG
CCCGCTTCGACGTCTCCCCCGCGGTTGAAGACTTCCTCCTCCAGGTGAGC
CTATGGCCGCATCGGACCTCCAGCATGCGTGTCGACGTCCGGCATGTCCC
CCGCTCCTCCCTCCCCCCCTCGTGCCTCGCAAGGGAGAAAATGCCTCCCT
CCCTCCCTCCCTCCCTCCCTACCTCCCTCCCTTCCGCCACGGGACCCCGG
CCACCCGTGCAGGAGGAAGGGAAAGACGAGGCTTGCTCTGAAAGGGCGCT
TTGTGAGGATGGAGGGAGGGAGGCAGGAGCGGAGGTGGAGAGGGAGGGTC
GGAAGAGGAGACGCGCCTTTGAGGGTCTGGGGACCGCGTCTGGGGTGGGG
GGAGGGAGGGAGGGGGGGAGGGGGCGCTTGAGGGGAGGGCAGATGATGAG
CGTCGGTGGGCCCGGGAAGCGGGGAAGGGGGGCCAGGTGGGCGAGGGGCG
ACCGGGGGAGAGGGAGGGTGCTGGGGGAGGGAGGTGTGGAGAGGGCGACG
GGAGCGAGGGTGTCTGCGGTGCAAGGAGGGCAAGCGCAGTATCTTGGGGA
GCAGCCACAGGAAGACATTCTACGAGACTGGAAGCAGCCGTCAGAGTCGT
CAGCACCGCGCAGTATGCACGCTCGTGGCGAAGCAAGGCGCAATGGGGAG
GGAAGTAACGGTCCGGGAAGTAACGGTCCGGGAAGTAACGGTCAGGGGAT
GTGGGAACGGGAGCGGACATCGCCCTTCTAG

protein sequence of rna7512

>rna7512-protein ID=rna7512-protein|Name=rna7512|organism=Nannochloropsis gaditana|type=polypeptide|length=241bp
MYNRQVIFALSQLPRRQIFLLICLISSALAFVGPATVVLHNQSPHLQGRD
GIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGL
PLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDP
KWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANL
VELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV

mRNA from alignment at CM002472.1:132656..133625-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7512 ID=rna7512|Name=rna7512|organism=Nannochloropsis gaditana|type=mRNA|length=970bp|location=Sequence derived from alignment at CM002472.1:132656..133625- (Nannochloropsis gaditana)
AGAGGAGTACCCCTTCAGCATTCGAGGACCAGACATACTCTACTCACTCT
TACCACGGCCATCGCCGGCACACAACACATTTCCATTGTCATGCTGCTTT
CTAGGCATCAAAATGTACAATCGTCAAGTCATTTTTGCCTTATCCCAGCT
GCCGCGCCGGCAGATCTTCCTCCTCATCTGCCTCATCTCATCGGCCCTGG
CCTTCGTAGGGCCTGCGACCGTGGTCCTACACAATCAATCTCCACATTTG
CAAGGGCGGGATGGCATTCACGATGCTACGGCAGCCACGTCGACGCCTCC
AAGGAAAGGAGCACCGCGCATGTCGGCTTATTCAGAGCCTGTCCCGCAGG
CCACAGACCCGCCTTTCCGCATCGGCCACGGTTTTGACATCCATAGACTG
GAAGCGGGGCTGCCATTGGTGATAGGGGGCGTCAAAATCGAGTTTGATAA
AGGGTCGGCCGCGCACTCGGACGGAGATGCCTTGTACCACTCGGTGACGG
ACGCGATTCTGGGAGCCATCGGCCTGCCCGACATCGGACAACTCTTCCCG
GACACCGACCCGAAATGGAAGGGGGCAGACTCGGCGCAGTTCATGAGGGA
GGCGCGCCGGCTAATGACGCTGAGAGGCTACCGCATCGGGAATGTGGACG
TGACCTTGATCTTGCAGAAGCCCAAGGTGAAGGACATCAAACCGCAGATG
AAGGCGAATCTGGTGGAGCTGCTAGGGACCGAGGAGAGCCGCGTGAACAT
CAAGGCGCGCACACACGAGCACGTGGACAGCGTGGGCGAGTCTAGGAGCT
GGGTGGTGCACGTGGTCATACTCTTGGAGAAGGTCTGAAGGGCAAGGAAA
GGGTTCAGCGTGCCGGGGGTGACGGTGCTTTGTTTTCTTTGGACACATTA
GCACCTTATAATCCATACCAAAGGCACACACCGTCAAAACCCTCGCTTTC
CGCCTCCTCCTTGCTTTCCC

Coding sequence (CDS) from alignment at CM002472.1:132656..133625-

>rna7512 ID=rna7512|Name=rna7512|organism=Nannochloropsis gaditana|type=CDS|length=726bp|location=Sequence derived from alignment at CM002472.1:132656..133625- (Nannochloropsis gaditana)
ATGTACAATCGTCAAGTCATTTTTGCCTTATCCCAGCTGCCGCGCCGGCA
GATCTTCCTCCTCATCTGCCTCATCTCATCGGCCCTGGCCTTCGTAGGGC
CTGCGACCGTGGTCCTACACAATCAATCTCCACATTTGCAAGGGCGGGAT
GGCATTCACGATGCTACGGCAGCCACGTCGACGCCTCCAAGGAAAGGAGC
ACCGCGCATGTCGGCTTATTCAGAGCCTGTCCCGCAGGCCACAGACCCGC
CTTTCCGCATCGGCCACGGTTTTGACATCCATAGACTGGAAGCGGGGCTG
CCATTGGTGATAGGGGGCGTCAAAATCGAGTTTGATAAAGGGTCGGCCGC
GCACTCGGACGGAGATGCCTTGTACCACTCGGTGACGGACGCGATTCTGG
GAGCCATCGGCCTGCCCGACATCGGACAACTCTTCCCGGACACCGACCCG
AAATGGAAGGGGGCAGACTCGGCGCAGTTCATGAGGGAGGCGCGCCGGCT
AATGACGCTGAGAGGCTACCGCATCGGGAATGTGGACGTGACCTTGATCT
TGCAGAAGCCCAAGGTGAAGGACATCAAACCGCAGATGAAGGCGAATCTG
GTGGAGCTGCTAGGGACCGAGGAGAGCCGCGTGAACATCAAGGCGCGCAC
ACACGAGCACGTGGACAGCGTGGGCGAGTCTAGGAGCTGGGTGGTGCACG
TGGTCATACTCTTGGAGAAGGTCTGA

Synonyms

Publications