EWM23179.1, cds7494 (CDS) Nannochloropsis gaditana

Overview
NameEWM23179.1
Unique Namecds7494
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:132788..133513 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23179.1
Product2-c-methyl-d-erythritol -cyclodiphosphate synthase
Orig transcript idgnl|cribi|Naga_100484g5.2349.mrna
GeneMCS
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:132788..133513 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0016114terpenoid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:00086852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
Vocabulary: INTERPRO
TermDefinition
IPR020555MECDP_synthase_CS
IPR003526MECDP_synthase
Homology
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|585104061|gb|EWM23179.1| (2-c-methyl-d-erythritol -cyclodiphosphate synthase [Nannochloropsis gaditana])

HSP 1 Score: 493.041 bits (1268), Expect = 1.965e-176
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MYNRQVIFALSQLPRRQIFLLICLISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241
            MYNRQVIFALSQLPRRQIFLLICLISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV
Sbjct:    1 MYNRQVIFALSQLPRRQIFLLICLISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241          
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|553184397|ref|XP_005854081.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Nannochloropsis gaditana CCMP526] >gi|422294976|gb|EKU22275.1| 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 486.108 bits (1250), Expect = 1.092e-173
Identity = 237/241 (98.34%), Postives = 238/241 (98.76%), Query Frame = 0
Query:    1 MYNRQVIFALSQLPRRQIFLLICLISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241
            MYNRQVIF LSQLPRRQIFLLICLISSALAFV PATV LHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEF+KGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV
Sbjct:    1 MYNRQVIFVLSQLPRRQIFLLICLISSALAFVRPATVALHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFEKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241          
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|298709135|emb|CBJ31080.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 228.794 bits (582), Expect = 4.924e-73
Identity = 112/164 (68.29%), Postives = 126/164 (76.83%), Query Frame = 0
Query:   78 PQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241
            P   +P   IGHGFDIHRL  G  LVIGGV I ++ G+ AHSDGD +YHSV DAILGA+GLPDIGQLFPD DP W GADS+ FM EA R M  RG+R+GNVDVTLILQKPKV DIKP M+ N+V LL T   RVN+KARTHE VDSVGE R+   HVV+LLEKV
Sbjct:    4 PDLEEPAMLIGHGFDIHRLVEGKELVIGGVNIPYELGADAHSDGDVIYHSVVDAILGALGLPDIGQLFPDNDPDWSGADSSIFMEEAYRRMDERGFRVGNVDVTLILQKPKVMDIKPLMRDNIVRLLRTSLGRVNVKARTHEKVDSVGEGRAMACHVVVLLEKV 167          
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|1149741199|ref|XP_020194290.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 223.402 bits (568), Expect = 4.263e-70
Identity = 102/156 (65.38%), Postives = 123/156 (78.85%), Query Frame = 0
Query:   85 FRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
            FR+GHGFD+HRLE GLPL+IGG+ I  D+G  AHSDGD L H V DAILGA+GLPDIGQ+FPDTDP+WKGADS  FMREA +LM   GY +GN+D TLILQKPK+   K  +++NL ELLG + S VNIKA+THE VDS+GE+RS   H V+LL +
Sbjct:   63 FRVGHGFDLHRLEPGLPLIIGGISIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPRWKGADSCVFMREAVKLMHQAGYELGNLDATLILQKPKISPFKETIRSNLCELLGADPSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMR 218          
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|1111020042|ref|XP_019261034.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Nicotiana attenuata] >gi|1102292682|gb|OIT38748.1| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Nicotiana attenuata])

HSP 1 Score: 223.402 bits (568), Expect = 5.636e-70
Identity = 114/216 (52.78%), Postives = 145/216 (67.13%), Query Frame = 0
Query:   25 ISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
            IS  + F  P++  +     H   R+ +  ++AAT+          ++ + P   A   PFR+GHGFD+HRLE G PL+IGG+ I  DKG  AHSDGD L H V DAILGA+GLPDIGQ+FPDTDPKWKGA S+ FM EA RLM   GY +GN+D TLILQ+PKV   K  ++ANL +LLG + S VN+KA+THE VDS+GE+RS   H V+LL K
Sbjct:   16 ISKQIPFSFPSSNPIIRSFTHKPSRNLVVSSSAATTNAIEADTRTSNSAATP---AKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHDKGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFMEEAVRLMHEAGYELGNLDATLILQRPKVSPHKEAIRANLCKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMK 228          
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|548833994|gb|ERM96431.1| (hypothetical protein AMTR_s00001p00248450 [Amborella trichopoda])

HSP 1 Score: 221.09 bits (562), Expect = 6.823e-70
Identity = 102/158 (64.56%), Postives = 126/158 (79.75%), Query Frame = 0
Query:   83 PPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
            PPFR+GHGFD+HRLE GLPL+IGG+ I  D+G  AHSDGD L H V DAILGA+GLPDIGQ+FPD+DPKW+GA+S+ FMREA +LM   GY +GN+D TLILQ+PK+   K  ++ANL ELLG + S VN+KA+THE VDS+GE+RS   H V+LL K
Sbjct:   20 PPFRVGHGFDLHRLEPGLPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWRGAESSVFMREAVKLMHEAGYELGNLDATLILQRPKLSPHKESIRANLCELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLIK 177          
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|697162518|ref|XP_009590055.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 222.631 bits (566), Expect = 1.094e-69
Identity = 115/220 (52.27%), Postives = 146/220 (66.36%), Query Frame = 0
Query:   25 ISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDP----PFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
            IS  + F  P++  L     H   R+ +  ++AA +         + A ++    AT P    PFR+GHGFD+HRLE G PL+IGG+ I  D+G  AHSDGD L H V DAILGA+GLPDIGQ+FPDTDPKWKGA S+ FM EA RLM   GY +GN+D TLILQ+PKV   K  ++ANL +LLG + S VN+KA+THE VDS+GE+RS   H V+LL K
Sbjct:   18 ISKQIPFSFPSSNPLIRSFTHKPSRNLVVSSSAAATN-------AIEAETQTSNSATTPAKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFMEEAVRLMHEAGYELGNLDATLILQRPKVSPHKEAIRANLCKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMK 230          
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|769823097|ref|XP_011628983.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic isoform X1 [Amborella trichopoda])

HSP 1 Score: 222.631 bits (566), Expect = 1.178e-69
Identity = 102/158 (64.56%), Postives = 126/158 (79.75%), Query Frame = 0
Query:   83 PPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
            PPFR+GHGFD+HRLE GLPL+IGG+ I  D+G  AHSDGD L H V DAILGA+GLPDIGQ+FPD+DPKW+GA+S+ FMREA +LM   GY +GN+D TLILQ+PK+   K  ++ANL ELLG + S VN+KA+THE VDS+GE+RS   H V+LL K
Sbjct:   77 PPFRVGHGFDLHRLEPGLPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWRGAESSVFMREAVKLMHEAGYELGNLDATLILQRPKLSPHKESIRANLCELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLIK 234          
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|747041492|ref|XP_011073285.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Sesamum indicum])

HSP 1 Score: 222.631 bits (566), Expect = 1.403e-69
Identity = 118/233 (50.64%), Postives = 150/233 (64.38%), Query Frame = 0
Query:   25 ISSALAFVGPATVVLHNQSPHLQGRDGIHDATAAT-STPPRKGAPRMSAYSEPV------------PQATDP------PFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILL 238
            ++++L + GP  V    ++P  Q    +  A     S P  K   R +++S P             PQA  P      PFR+GHGFD+HRLE G PL+IGG+ I  D+G  AHSDGD L H V DAILGA+GLPDIGQ+FPDTDPKWKGA S+ FM+EA RLM   GY +GN+D TLILQ+PK+   K  ++ANL ELLG + S VN+KA+THE VDS+GE+RS   H V+LL
Sbjct:    3 MANSLCYAGPFPV----KTPSKQSPGQLRGACVVRRSLPYLKFTARPASFSPPALVVAAASTVEAEPQAKSPTPPKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAASSVFMKEAVRLMHEAGYELGNLDSTLILQRPKLSPHKEAIRANLCELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 231          
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|357137031|ref|XP_003570105.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Brachypodium distachyon] >gi|944065186|gb|KQK00777.1| hypothetical protein BRADI_3g51750 [Brachypodium distachyon])

HSP 1 Score: 222.246 bits (565), Expect = 1.427e-69
Identity = 100/157 (63.69%), Postives = 125/157 (79.62%), Query Frame = 0
Query:   84 PFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
            PFR+GHGFD+HRLE GLPL+IGG+ I  D+G  AHSDGD L H V DAILGA+GLPDIGQ+FPDTDP+WKGA+S+ FM+EA +LM   GY +GN+D TLILQKPK+   K  +++NL +LLG + S VN+KA+THE VDS+GE+RS   H VILL +
Sbjct:   67 PFRVGHGFDLHRLEPGLPLIIGGINIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPRWKGAESSVFMKEAVKLMHQAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMR 223          
The following BLAST results are available for this feature:
BLAST of EWM23179.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104061|gb|EWM23179.1|1.965e-176100.002-c-methyl-d-erythritol -cyclodiphosphate synthase... [more]
gi|553184397|ref|XP_005854081.1|1.092e-17398.342-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
gi|298709135|emb|CBJ31080.1|4.924e-7368.292-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
gi|1149741199|ref|XP_020194290.1|4.263e-7065.382-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
gi|1111020042|ref|XP_019261034.1|5.636e-7052.78PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphos... [more]
gi|548833994|gb|ERM96431.1|6.823e-7064.56hypothetical protein AMTR_s00001p00248450 [Amborel... [more]
gi|697162518|ref|XP_009590055.1|1.094e-6952.27PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphos... [more]
gi|769823097|ref|XP_011628983.1|1.178e-6964.562-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
gi|747041492|ref|XP_011073285.1|1.403e-6950.642-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
gi|357137031|ref|XP_003570105.1|1.427e-6963.69PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphos... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7512rna7512Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications