EWM23179.1, cds7494 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|585104061|gb|EWM23179.1| (2-c-methyl-d-erythritol -cyclodiphosphate synthase [Nannochloropsis gaditana]) HSP 1 Score: 493.041 bits (1268), Expect = 1.965e-176 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query: 1 MYNRQVIFALSQLPRRQIFLLICLISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241
MYNRQVIFALSQLPRRQIFLLICLISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV
Sbjct: 1 MYNRQVIFALSQLPRRQIFLLICLISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|553184397|ref|XP_005854081.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Nannochloropsis gaditana CCMP526] >gi|422294976|gb|EKU22275.1| 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 486.108 bits (1250), Expect = 1.092e-173 Identity = 237/241 (98.34%), Postives = 238/241 (98.76%), Query Frame = 0
Query: 1 MYNRQVIFALSQLPRRQIFLLICLISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241
MYNRQVIF LSQLPRRQIFLLICLISSALAFV PATV LHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEF+KGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV
Sbjct: 1 MYNRQVIFVLSQLPRRQIFLLICLISSALAFVRPATVALHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFEKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|298709135|emb|CBJ31080.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor [Ectocarpus siliculosus]) HSP 1 Score: 228.794 bits (582), Expect = 4.924e-73 Identity = 112/164 (68.29%), Postives = 126/164 (76.83%), Query Frame = 0
Query: 78 PQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241
P +P IGHGFDIHRL G LVIGGV I ++ G+ AHSDGD +YHSV DAILGA+GLPDIGQLFPD DP W GADS+ FM EA R M RG+R+GNVDVTLILQKPKV DIKP M+ N+V LL T RVN+KARTHE VDSVGE R+ HVV+LLEKV
Sbjct: 4 PDLEEPAMLIGHGFDIHRLVEGKELVIGGVNIPYELGADAHSDGDVIYHSVVDAILGALGLPDIGQLFPDNDPDWSGADSSIFMEEAYRRMDERGFRVGNVDVTLILQKPKVMDIKPLMRDNIVRLLRTSLGRVNVKARTHEKVDSVGEGRAMACHVVVLLEKV 167
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|1149741199|ref|XP_020194290.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 223.402 bits (568), Expect = 4.263e-70 Identity = 102/156 (65.38%), Postives = 123/156 (78.85%), Query Frame = 0
Query: 85 FRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
FR+GHGFD+HRLE GLPL+IGG+ I D+G AHSDGD L H V DAILGA+GLPDIGQ+FPDTDP+WKGADS FMREA +LM GY +GN+D TLILQKPK+ K +++NL ELLG + S VNIKA+THE VDS+GE+RS H V+LL +
Sbjct: 63 FRVGHGFDLHRLEPGLPLIIGGISIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPRWKGADSCVFMREAVKLMHQAGYELGNLDATLILQKPKISPFKETIRSNLCELLGADPSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMR 218
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|1111020042|ref|XP_019261034.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Nicotiana attenuata] >gi|1102292682|gb|OIT38748.1| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Nicotiana attenuata]) HSP 1 Score: 223.402 bits (568), Expect = 5.636e-70 Identity = 114/216 (52.78%), Postives = 145/216 (67.13%), Query Frame = 0
Query: 25 ISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
IS + F P++ + H R+ + ++AAT+ ++ + P A PFR+GHGFD+HRLE G PL+IGG+ I DKG AHSDGD L H V DAILGA+GLPDIGQ+FPDTDPKWKGA S+ FM EA RLM GY +GN+D TLILQ+PKV K ++ANL +LLG + S VN+KA+THE VDS+GE+RS H V+LL K
Sbjct: 16 ISKQIPFSFPSSNPIIRSFTHKPSRNLVVSSSAATTNAIEADTRTSNSAATP---AKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHDKGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFMEEAVRLMHEAGYELGNLDATLILQRPKVSPHKEAIRANLCKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMK 228
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|548833994|gb|ERM96431.1| (hypothetical protein AMTR_s00001p00248450 [Amborella trichopoda]) HSP 1 Score: 221.09 bits (562), Expect = 6.823e-70 Identity = 102/158 (64.56%), Postives = 126/158 (79.75%), Query Frame = 0
Query: 83 PPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
PPFR+GHGFD+HRLE GLPL+IGG+ I D+G AHSDGD L H V DAILGA+GLPDIGQ+FPD+DPKW+GA+S+ FMREA +LM GY +GN+D TLILQ+PK+ K ++ANL ELLG + S VN+KA+THE VDS+GE+RS H V+LL K
Sbjct: 20 PPFRVGHGFDLHRLEPGLPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWRGAESSVFMREAVKLMHEAGYELGNLDATLILQRPKLSPHKESIRANLCELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLIK 177
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|697162518|ref|XP_009590055.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Nicotiana tomentosiformis]) HSP 1 Score: 222.631 bits (566), Expect = 1.094e-69 Identity = 115/220 (52.27%), Postives = 146/220 (66.36%), Query Frame = 0
Query: 25 ISSALAFVGPATVVLHNQSPHLQGRDGIHDATAATSTPPRKGAPRMSAYSEPVPQATDP----PFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
IS + F P++ L H R+ + ++AA + + A ++ AT P PFR+GHGFD+HRLE G PL+IGG+ I D+G AHSDGD L H V DAILGA+GLPDIGQ+FPDTDPKWKGA S+ FM EA RLM GY +GN+D TLILQ+PKV K ++ANL +LLG + S VN+KA+THE VDS+GE+RS H V+LL K
Sbjct: 18 ISKQIPFSFPSSNPLIRSFTHKPSRNLVVSSSAAATN-------AIEAETQTSNSATTPAKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFMEEAVRLMHEAGYELGNLDATLILQRPKVSPHKEAIRANLCKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMK 230
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|769823097|ref|XP_011628983.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic isoform X1 [Amborella trichopoda]) HSP 1 Score: 222.631 bits (566), Expect = 1.178e-69 Identity = 102/158 (64.56%), Postives = 126/158 (79.75%), Query Frame = 0
Query: 83 PPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
PPFR+GHGFD+HRLE GLPL+IGG+ I D+G AHSDGD L H V DAILGA+GLPDIGQ+FPD+DPKW+GA+S+ FMREA +LM GY +GN+D TLILQ+PK+ K ++ANL ELLG + S VN+KA+THE VDS+GE+RS H V+LL K
Sbjct: 77 PPFRVGHGFDLHRLEPGLPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWRGAESSVFMREAVKLMHEAGYELGNLDATLILQRPKLSPHKESIRANLCELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLIK 234
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|747041492|ref|XP_011073285.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Sesamum indicum]) HSP 1 Score: 222.631 bits (566), Expect = 1.403e-69 Identity = 118/233 (50.64%), Postives = 150/233 (64.38%), Query Frame = 0
Query: 25 ISSALAFVGPATVVLHNQSPHLQGRDGIHDATAAT-STPPRKGAPRMSAYSEPV------------PQATDP------PFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILL 238
++++L + GP V ++P Q + A S P K R +++S P PQA P PFR+GHGFD+HRLE G PL+IGG+ I D+G AHSDGD L H V DAILGA+GLPDIGQ+FPDTDPKWKGA S+ FM+EA RLM GY +GN+D TLILQ+PK+ K ++ANL ELLG + S VN+KA+THE VDS+GE+RS H V+LL
Sbjct: 3 MANSLCYAGPFPV----KTPSKQSPGQLRGACVVRRSLPYLKFTARPASFSPPALVVAAASTVEAEPQAKSPTPPKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAASSVFMKEAVRLMHEAGYELGNLDSTLILQRPKLSPHKEAIRANLCELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 231
BLAST of EWM23179.1 vs. NCBI_GenBank
Match: gi|357137031|ref|XP_003570105.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Brachypodium distachyon] >gi|944065186|gb|KQK00777.1| hypothetical protein BRADI_3g51750 [Brachypodium distachyon]) HSP 1 Score: 222.246 bits (565), Expect = 1.427e-69 Identity = 100/157 (63.69%), Postives = 125/157 (79.62%), Query Frame = 0
Query: 84 PFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
PFR+GHGFD+HRLE GLPL+IGG+ I D+G AHSDGD L H V DAILGA+GLPDIGQ+FPDTDP+WKGA+S+ FM+EA +LM GY +GN+D TLILQKPK+ K +++NL +LLG + S VN+KA+THE VDS+GE+RS H VILL +
Sbjct: 67 PFRVGHGFDLHRLEPGLPLIIGGINIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPRWKGAESSVFMKEAVKLMHQAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMR 223 The following BLAST results are available for this feature:
BLAST of EWM23179.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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