EWM23206.1, cds7468 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23206.1
Unique Name	cds7468
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002472.1:75914..76058 -
Alignment location	CM002472.1:75544..75833 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23206.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101075g2.10526.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:75914..76058 -
CM002472.1	supercontig	CM002472.1:75544..75833 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM23206.1 vs. NCBI_GenBank
Match: gi|585104112|gb|EWM23206.1| (hypothetical protein Naga_101075g2 [Nannochloropsis gaditana])

HSP 1 Score: 297.36 bits (760), Expect = 4.105e-102
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0

Query:    1 MLVAIRPCLLKRHRAHCGNRYDAGMASAAFSPETREFSLLWSSIAAGTRMDIISLCCTRALVYDAIFCGHEMRLVRRDCSCLLCQSDLGSSATIEYFGPFPLSETVVLPPVNVFMMCRRHALPLASWKATHILVLIDLMPTKEN 144
            MLVAIRPCLLKRHRAHCGNRYDAGMASAAFSPETREFSLLWSSIAAGTRMDIISLCCTRALVYDAIFCGHEMRLVRRDCSCLLCQSDLGSSATIEYFGPFPLSETVVLPPVNVFMMCRRHALPLASWKATHILVLIDLMPTKEN
Sbjct:    1 MLVAIRPCLLKRHRAHCGNRYDAGMASAAFSPETREFSLLWSSIAAGTRMDIISLCCTRALVYDAIFCGHEMRLVRRDCSCLLCQSDLGSSATIEYFGPFPLSETVVLPPVNVFMMCRRHALPLASWKATHILVLIDLMPTKEN 144

The following BLAST results are available for this feature:

BLAST of EWM23206.1 vs. NCBI_GenBank

BLAST of EWM23206.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585104112\|gb\|EWM23206.1\|	4.105e-102	100.00	hypothetical protein Naga_101075g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7486	rna7486	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications