EWM23212.1, cds7461 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|585104134|gb|EWM23212.1| (delta-4 fatty acid desaturase [Nannochloropsis gaditana]) HSP 1 Score: 195.282 bits (495), Expect = 2.250e-63 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MYVSHICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLYHSRQQGEVTLRECQDMAQEVNAGMPPSARADGFYIEIH 92
MYVSHICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLYHSRQQGEVTLRECQDMAQEVNAGMPPSARADGFYIEIH
Sbjct: 1 MYVSHICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLYHSRQQGEVTLRECQDMAQEVNAGMPPSARADGFYIEIH 92
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|298712318|emb|CBJ33112.1| (Fatty acid desaturase [Ectocarpus siliculosus]) HSP 1 Score: 57.3806 bits (137), Expect = 3.810e-9 Identity = 24/59 (40.68%), Postives = 34/59 (57.63%), Query Frame = 0
Query: 8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLYHSRQQGEVTLRE 66
G+N QIEHHLFP +SH + + P++++ C EFNIP+ W Y S + V E
Sbjct: 3 GINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSE 61
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|1210524766|dbj|GAX16474.1| (acyl-lipid (8-3)-desaturase [Fistulifera solaris]) HSP 1 Score: 57.7658 bits (138), Expect = 1.060e-7 Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0
Query: 8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFK 45
GLNLQIEHHLFPGL+H L + P++Q TCREF + +K
Sbjct: 554 GLNLQIEHHLFPGLNHCHLYRIQPIVQATCREFGVEYK 591
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|1173295504|ref|WP_081154092.1| (acyl-CoA desaturase [Niastella vici] >gi|1172823221|gb|OQP59700.1| fatty acid desaturase [Niastella vici]) HSP 1 Score: 56.9954 bits (136), Expect = 1.711e-7 Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0
Query: 5 HICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKF 46
+I GLN QIEHHLFP + H R + P+++ T REFN+P+
Sbjct: 298 YIGGLNFQIEHHLFPNICHVHYRKIAPIVERTAREFNVPYNL 339
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|954192782|gb|KRX05534.1| (Cytochrome b5-like heme/steroid binding domain [Pseudocohnilembus persalinus]) HSP 1 Score: 56.9954 bits (136), Expect = 1.884e-7 Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 0
Query: 8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPF 44
G+N QIEHHLFP + + L ++P++QETC+EFN+P+
Sbjct: 378 GINYQIEHHLFPSMCNVHLNQISPIVQETCKEFNVPY 414
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|518426268|ref|WP_019596475.1| (acyl-CoA desaturase [Rhodonellum psychrophilum] >gi|548771307|gb|ERM83765.1| fatty acid desaturase [Rhodonellum psychrophilum GCM71 = DSM 17998] >gi|1089141702|emb|SDY64650.1| linoleoyl-CoA desaturase [Rhodonellum ikkaensis]) HSP 1 Score: 56.6102 bits (135), Expect = 2.008e-7 Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 0
Query: 6 ICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPF-KFPRIEW 51
I GLN QIEHHLFP +SH ++ +I+ETCRE+NIP+ + ++ W
Sbjct: 293 IGGLNFQIEHHLFPNVSHIHYPAISKIIKETCREYNIPYLEHEKMRW 339
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|219125521|ref|XP_002183026.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405301|gb|EEC45244.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|402171515|gb|AFQ33496.1| palmitoyl-CoA delta 9-desaturase [Phaeodactylum tricornutum]) HSP 1 Score: 56.225 bits (134), Expect = 3.021e-7 Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 0
Query: 8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFK 45
GLNLQIEHHLFPG++H L + PV++ETC E+ + +K
Sbjct: 392 GLNLQIEHHLFPGINHCHLHHIAPVVRETCNEYGVRYK 429
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|75330849|sp|Q8S3C0.1|D4FAD_THRSP (RecName: Full=Acyl-lipid (7-3)-desaturase; AltName: Full=Acyl-lipid 4-desaturase; AltName: Full=Delta-4 fatty acid desaturase >gi|20069125|gb|AAM09688.1|AF489589_1 delta-4 fatty acid desaturase [Thraustochytrium sp. ATCC21685]) HSP 1 Score: 55.8398 bits (133), Expect = 4.563e-7 Identity = 27/58 (46.55%), Postives = 32/58 (55.17%), Query Frame = 0
Query: 8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLY-----HSRQQG 60
GLN QIEHHLFPGLSH + V Q TC E+ +P++ W Y H RQ G
Sbjct: 450 GLNHQIEHHLFPGLSHETYYHIQDVFQSTCAEYGVPYQHEPSLWTAYWKMLEHLRQLG 507
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|918739896|ref|WP_052593313.1| (hypothetical protein [Aureispira sp. CCB-QB1]) HSP 1 Score: 55.8398 bits (133), Expect = 4.859e-7 Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 0
Query: 8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKF 46
GL QIEHHLFP +S+S L + P+++ETC+EF++P+ +
Sbjct: 379 GLGYQIEHHLFPTISYSRLHEIAPIVKETCKEFDLPYHY 417
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|50882495|gb|AAT85663.1| (polyunsaturated fatty acid delta-5-desaturase [Marchantia polymorpha]) HSP 1 Score: 55.8398 bits (133), Expect = 5.148e-7 Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 0
Query: 1 MYVSHICG-LNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPF 44
M+ +HI G LN QIEHHLFPG+ H ++ P+++ TC EFN+P+
Sbjct: 410 MFWTHISGGLNHQIEHHLFPGVCHVHYPSIQPIVKATCDEFNVPY 454 The following BLAST results are available for this feature:
BLAST of EWM23212.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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