EWM23212.1, cds7461 (CDS) Nannochloropsis gaditana

Overview
NameEWM23212.1
Unique Namecds7461
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:51248..51266 -
Alignment locationCM002472.1:50938..51052 -
Alignment locationCM002472.1:50352..50496 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23212.1
Productdelta-4 fatty acid desaturase
Orig transcript idgnl|cribi|Naga_101483g1.9449.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:51248..51266 -
CM002472.1supercontigCM002472.1:50938..51052 -
CM002472.1supercontigCM002472.1:50352..50496 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR005804Fatty_acid_desaturase-1
Homology
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|585104134|gb|EWM23212.1| (delta-4 fatty acid desaturase [Nannochloropsis gaditana])

HSP 1 Score: 195.282 bits (495), Expect = 2.250e-63
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query:    1 MYVSHICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLYHSRQQGEVTLRECQDMAQEVNAGMPPSARADGFYIEIH 92
            MYVSHICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLYHSRQQGEVTLRECQDMAQEVNAGMPPSARADGFYIEIH
Sbjct:    1 MYVSHICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLYHSRQQGEVTLRECQDMAQEVNAGMPPSARADGFYIEIH 92          
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|298712318|emb|CBJ33112.1| (Fatty acid desaturase [Ectocarpus siliculosus])

HSP 1 Score: 57.3806 bits (137), Expect = 3.810e-9
Identity = 24/59 (40.68%), Postives = 34/59 (57.63%), Query Frame = 0
Query:    8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLYHSRQQGEVTLRE 66
            G+N QIEHHLFP +SH +   + P++++ C EFNIP+      W  Y S  +  V   E
Sbjct:    3 GINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSE 61          
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|1210524766|dbj|GAX16474.1| (acyl-lipid (8-3)-desaturase [Fistulifera solaris])

HSP 1 Score: 57.7658 bits (138), Expect = 1.060e-7
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFK 45
            GLNLQIEHHLFPGL+H  L  + P++Q TCREF + +K
Sbjct:  554 GLNLQIEHHLFPGLNHCHLYRIQPIVQATCREFGVEYK 591          
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|1173295504|ref|WP_081154092.1| (acyl-CoA desaturase [Niastella vici] >gi|1172823221|gb|OQP59700.1| fatty acid desaturase [Niastella vici])

HSP 1 Score: 56.9954 bits (136), Expect = 1.711e-7
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0
Query:    5 HICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKF 46
            +I GLN QIEHHLFP + H   R + P+++ T REFN+P+  
Sbjct:  298 YIGGLNFQIEHHLFPNICHVHYRKIAPIVERTAREFNVPYNL 339          
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|954192782|gb|KRX05534.1| (Cytochrome b5-like heme/steroid binding domain [Pseudocohnilembus persalinus])

HSP 1 Score: 56.9954 bits (136), Expect = 1.884e-7
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 0
Query:    8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPF 44
            G+N QIEHHLFP + +  L  ++P++QETC+EFN+P+
Sbjct:  378 GINYQIEHHLFPSMCNVHLNQISPIVQETCKEFNVPY 414          
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|518426268|ref|WP_019596475.1| (acyl-CoA desaturase [Rhodonellum psychrophilum] >gi|548771307|gb|ERM83765.1| fatty acid desaturase [Rhodonellum psychrophilum GCM71 = DSM 17998] >gi|1089141702|emb|SDY64650.1| linoleoyl-CoA desaturase [Rhodonellum ikkaensis])

HSP 1 Score: 56.6102 bits (135), Expect = 2.008e-7
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 0
Query:    6 ICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPF-KFPRIEW 51
            I GLN QIEHHLFP +SH     ++ +I+ETCRE+NIP+ +  ++ W
Sbjct:  293 IGGLNFQIEHHLFPNVSHIHYPAISKIIKETCREYNIPYLEHEKMRW 339          
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|219125521|ref|XP_002183026.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405301|gb|EEC45244.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|402171515|gb|AFQ33496.1| palmitoyl-CoA delta 9-desaturase [Phaeodactylum tricornutum])

HSP 1 Score: 56.225 bits (134), Expect = 3.021e-7
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFK 45
            GLNLQIEHHLFPG++H  L  + PV++ETC E+ + +K
Sbjct:  392 GLNLQIEHHLFPGINHCHLHHIAPVVRETCNEYGVRYK 429          
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|75330849|sp|Q8S3C0.1|D4FAD_THRSP (RecName: Full=Acyl-lipid (7-3)-desaturase; AltName: Full=Acyl-lipid 4-desaturase; AltName: Full=Delta-4 fatty acid desaturase >gi|20069125|gb|AAM09688.1|AF489589_1 delta-4 fatty acid desaturase [Thraustochytrium sp. ATCC21685])

HSP 1 Score: 55.8398 bits (133), Expect = 4.563e-7
Identity = 27/58 (46.55%), Postives = 32/58 (55.17%), Query Frame = 0
Query:    8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIEWPLY-----HSRQQG 60
            GLN QIEHHLFPGLSH     +  V Q TC E+ +P++     W  Y     H RQ G
Sbjct:  450 GLNHQIEHHLFPGLSHETYYHIQDVFQSTCAEYGVPYQHEPSLWTAYWKMLEHLRQLG 507          
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|918739896|ref|WP_052593313.1| (hypothetical protein [Aureispira sp. CCB-QB1])

HSP 1 Score: 55.8398 bits (133), Expect = 4.859e-7
Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    8 GLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKF 46
            GL  QIEHHLFP +S+S L  + P+++ETC+EF++P+ +
Sbjct:  379 GLGYQIEHHLFPTISYSRLHEIAPIVKETCKEFDLPYHY 417          
BLAST of EWM23212.1 vs. NCBI_GenBank
Match: gi|50882495|gb|AAT85663.1| (polyunsaturated fatty acid delta-5-desaturase [Marchantia polymorpha])

HSP 1 Score: 55.8398 bits (133), Expect = 5.148e-7
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    1 MYVSHICG-LNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPF 44
            M+ +HI G LN QIEHHLFPG+ H    ++ P+++ TC EFN+P+
Sbjct:  410 MFWTHISGGLNHQIEHHLFPGVCHVHYPSIQPIVKATCDEFNVPY 454          
The following BLAST results are available for this feature:
BLAST of EWM23212.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104134|gb|EWM23212.1|2.250e-63100.00delta-4 fatty acid desaturase [Nannochloropsis gad... [more]
gi|298712318|emb|CBJ33112.1|3.810e-940.68Fatty acid desaturase [Ectocarpus siliculosus][more]
gi|1210524766|dbj|GAX16474.1|1.060e-763.16acyl-lipid (8-3)-desaturase [Fistulifera solaris][more]
gi|1173295504|ref|WP_081154092.1|1.711e-750.00acyl-CoA desaturase [Niastella vici] >gi|117282322... [more]
gi|954192782|gb|KRX05534.1|1.884e-754.05Cytochrome b5-like heme/steroid binding domain [Ps... [more]
gi|518426268|ref|WP_019596475.1|2.008e-751.06acyl-CoA desaturase [Rhodonellum psychrophilum] >g... [more]
gi|219125521|ref|XP_002183026.1|3.021e-757.89predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|75330849|sp|Q8S3C0.1|D4FAD_THRSP4.563e-746.55RecName: Full=Acyl-lipid (7-3)-desaturase; AltName... [more]
gi|918739896|ref|WP_052593313.1|4.859e-751.28hypothetical protein [Aureispira sp. CCB-QB1][more]
gi|50882495|gb|AAT85663.1|5.148e-751.11polyunsaturated fatty acid delta-5-desaturase [Mar... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7479rna7479Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications