rna7479, rna7479 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7479
Unique Name	rna7479
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1168
Alignment location	CM002472.1:50352..51266 -

Link to JBrowse

Properties


Property Name	Value
Product	delta-4 fatty acid desaturase
Orig transcript id	gnl\|cribi\|Naga_101483g1.9449.mrna
Orig protein id	gnl\|cribi\|Naga_101483g1.9449
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:50352..51266 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101483g1	gene7239	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7479	rna7479-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23212.1	cds7461	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:50352..51266-
coding sequence from alignment at CM002472.1:50352..51266-

mRNA sequence

>rna7479 ID=rna7479|Name=rna7479|organism=Nannochloropsis gaditana|type=mRNA|length=1168bp
GGACACAATTTCGTACGAATTCATGCATGGCTCCGTGCAGACGTTGGTGC
TTTTCAGTGGGCAAGTGTAAACGAACACTAATGACGATTGAACCCAGCTT
GCATTGTGATGAAGCTTAATTGCTCTGTTCGACAGATCTACTTGCTACGT
TTCTTTCTCTAATAACCAACCTTGTCCAAACCTTTCAAAAATATAAACCC
CAGACAAGACAGTATCTCGGCATCAAATCACGGTACACGTACAACCTCGT
CGGGGGTGAACGCGACATCATCGCCCCCGAAAAAACTGGCAAGGCATTCC
TCTTGCAGCTGTCTAGTGCCCTTTCTTCTCCTTGCGACGATTTCCTTCCT
GATCGACCTTGGCAGTACCGTCCAATTTTTCACTACAATTCGTAGCATTA
TCCAATATCAACAAAATCAATTGCCAAGCTTTATATCTACTACATCGTTG
CAACCTTATCGGAGGCTATTGCGTGCCAGGCACGCGTTTGGCCGGCGCCC
CTCCTACCTTCCTCAATCAGGTATACATACGAGGGGAAATCGTAAGTTTT
GAAGCCTTCATTTAAAACCTGATATCAAATCTTGCATTTACATGCCTCTC
TCGCCATCCCTAGCGACGGGGTCGGCTTTGTCACTTTCCTTCTTTCCTTT
AGGCTGCGGTCTTCCATCCTTTCCTGGCCTGGTGCCCCGGCAGGATTCGC
GGATGACGTCATACTTCAAGCAGCCTGCGTTGGGAGCGCAGAGAAGCACG
TGGATGGCGGAGGAGGAGGGAGGGAAGGAGGGGGAATGTGCTGTGAGGGA
TGGAAAGGGAGGAGGTGAGGTTGTGGAGGTGGATGTGGAGGAAGCGGGGT
CACCCTTGATGGGGGGAGAAGGGCAAGGGGAGGGAGGGAAAAAGCGAAGA
ATGAAGGTAGAAAAGGAGAATGATGGCTGCGTGCAGAAGGAAAAGAGAGA
AGGGGGAGAAGTCAACGGTTTGGGAGCGGCTTTTCAACGGCACACGAGTG
CCTTCCACGAGGTCTCCCAGGAAGAAGGCGCCGAGATCTACACAAAACTA
ATCGGGTGGTACATCGATCACAGAAGAAAGTTGCCCTGGCGCGGTGATCC
TCCTCCCTACGACACGGAAGAGCGGAAGAGGGAGGGAAGGCGAGCGGGGA
GGGAGGGAGGGAGGGAGG

protein sequence of rna7479

>rna7479-protein ID=rna7479-protein|Name=rna7479|organism=Nannochloropsis gaditana|type=polypeptide|length=92bp
MYVSHICGLNLQIEHHLFPGLSHSVLRTLTPVIQETCREFNIPFKFPRIE
WPLYHSRQQGEVTLRECQDMAQEVNAGMPPSARADGFYIEIH

mRNA from alignment at CM002472.1:50352..51266-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7479 ID=rna7479|Name=rna7479|organism=Nannochloropsis gaditana|type=mRNA|length=915bp|location=Sequence derived from alignment at CM002472.1:50352..51266- (Nannochloropsis gaditana)
ATGTATGTATCTCATATATGTATGTATATATGTATGAGAATGTATGTATC
TCATATATGTATGTATATATGTATGAGAATGTATGTATCCCACCCTCCGG
CCCTCTCTTTCCTGCTCTTCGATTGGCTCTATATATATTTATATATTTAT
ATCGTCCATTATATTCTCTTCCCTCCACTTTCCTCATACCATCTACCTCC
AATCCCTTGTTAAGGTGGTCTCAACCTGCAGATCGAGCACCATCTGTTCC
CGGGCTTGTCCCACAGCGTCCTTCGGACTCTCACACCCGTCATCCAAGAG
ACTTGTCGAGAGTTCAATATACCTTTCAAGTGCGTATTTGCCCTCCCTCC
TTCATTTCCTCTTGCTTTTTCCTCCCCTTCTCGCTCCCATCTTTGTGGTT
TTCCTCCCCCACTCCCCTATCCATGACTTTTCCCCCGGCTCCACCTATCC
GTACGTCGATTTTGCTCACATTCTATTCTACCCACCTTTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGTCCTACCCC
ACCTTCGGCGCCCTTCTCACTGACGTGCACGCGTATTTTGCCACTCTCTC
CACCCCCATCGTACAAGAGGAGGAATGGAAGAAGGAGATATAAGCAAGAG
CTATGAGGCTTGAGAAGATATGAATGGAGTGGCAGAGAGGGAAAATATTC
ATCCAAAAAGAATGCCCTTGAGAACCAGGAGGCGAAGAAGAGAATGATTT
AAAGAGGGGAGAGTAGATAGGTTTCCTCGGATCGAATGGCCTCTGTACCA
CTCGAGGCAGCAGGGTGAAGTCACCTTAAGAGAATGTCAAGACATGGCGC
AGGAGGTGAATGCGGGTATGCCTCCTTCTGCCCGAGCCGACGGTTTTTAT
ATCGAGATACATTAG

Coding sequence (CDS) from alignment at CM002472.1:50352..51266-

>rna7479 ID=rna7479|Name=rna7479|organism=Nannochloropsis gaditana|type=CDS|length=837bp|location=Sequence derived from alignment at CM002472.1:50352..51266- (Nannochloropsis gaditana)
GTTTCCTCGGATCGAATGGCCTCTGTACCACTCGAGGCAGCAGGGTGAAG
TCACCTTAAGAGAATGTCAAGACATGGCGCAGGAGGTGAATGCGGGTATG
CCTCCTTCTGCCCGAGCCGACGGTTTTTATATCGAGATACATTAGGTGGT
CTCAACCTGCAGATCGAGCACCATCTGTTCCCGGGCTTGTCCCACAGCGT
CCTTCGGACTCTCACACCCGTCATCCAAGAGACTTGTCGAGAGTTCAATA
TACCTTTCAAATGTATGTATCTCATATATGTTTCCTCGGATCGAATGGCC
TCTGTACCACTCGAGGCAGCAGGGTGAAGTCACCTTAAGAGAATGTCAAG
ACATGGCGCAGGAGGTGAATGCGGGTATGCCTCCTTCTGCCCGAGCCGAC
GGTTTTTATATCGAGATACATTAGGTGGTCTCAACCTGCAGATCGAGCAC
CATCTGTTCCCGGGCTTGTCCCACAGCGTCCTTCGGACTCTCACACCCGT
CATCCAAGAGACTTGTCGAGAGTTCAATATACCTTTCAAATGTATGTATC
TCATATATGTTTCCTCGGATCGAATGGCCTCTGTACCACTCGAGGCAGCA
GGGTGAAGTCACCTTAAGAGAATGTCAAGACATGGCGCAGGAGGTGAATG
CGGGTATGCCTCCTTCTGCCCGAGCCGACGGTTTTTATATCGAGATACAT
TAGGTGGTCTCAACCTGCAGATCGAGCACCATCTGTTCCCGGGCTTGTCC
CACAGCGTCCTTCGGACTCTCACACCCGTCATCCAAGAGACTTGTCGAGA
GTTCAATATACCTTTCAAATGTATGTATCTCATATAT

Synonyms

Publications