EWM23233.1, cds7440 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|585104180|gb|EWM23233.1| (light harvesting complex protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 502.671 bits (1293), Expect = 6.706e-180 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0 Query: 1 AQVDKKSLAYREVMEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAFAFYPFSFSPEVSRFLGCQVPVDSLCMRVEFSAIGVGGCGAPALSRRFRSRRVGERMSPHKLPMLFSSLQAATRSRVSETRTWPATWSSTPSAWLLRRTWTRSSTSVPRSSTTVAWP 249 AQVDKKSLAYREVMEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAFAFYPFSFSPEVSRFLGCQVPVDSLCMRVEFSAIGVGGCGAPALSRRFRSRRVGERMSPHKLPMLFSSLQAATRSRVSETRTWPATWSSTPSAWLLRRTWTRSSTSVPRSSTTVAWP Sbjct: 1 AQVDKKSLAYREVMEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAFAFYPFSFSPEVSRFLGCQVPVDSLCMRVEFSAIGVGGCGAPALSRRFRSRRVGERMSPHKLPMLFSSLQAATRSRVSETRTWPATWSSTPSAWLLRRTWTRSSTSVPRSSTTVAWP 249
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|553193068|ref|XP_005855703.1| (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >gi|422293355|gb|EKU20655.1| light harvesting complex protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 233.032 bits (593), Expect = 1.919e-74 Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0 Query: 14 MEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGEST 128 MEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAG +T Sbjct: 1 MEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGGNT 115
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|553180326|ref|XP_005853385.1| (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >gi|422295676|gb|EKU22975.1| light harvesting complex protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 108.612 bits (270), Expect = 1.802e-25 Identity = 60/115 (52.17%), Postives = 77/115 (66.96%), Query Frame = 0 Query: 14 MEAGATAPF-GFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGES 127 +EAG T+PF FDP+GLS K+FKELKKWRE+E+KHGRVAMLAV+G +QE F P + D AIFHFQE++ + P + L+ I I+E+ TIS GW +E AG S Sbjct: 8 LEAGKTSPFPDGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENFHPLWGFNEKEMD--GAIFHFQEIQNVYPLFWTALLFIIGIIEARTISTGW---DENMAGSS 117
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|585112704|gb|EWM30071.1| (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 102.449 bits (254), Expect = 7.630e-23 Identity = 60/122 (49.18%), Postives = 77/122 (63.11%), Query Frame = 0 Query: 14 MEAGATAPF-GFFDPIGLSTGKTFKELKKWRESEVKHG-------RVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGES 127 +EAG T+PF FDP+GLS K+FKELKKWRE+E+KHG RVAMLAV+G +QE F P + D AIFHFQE++ + P + L+ I I+E+ TIS GW +E AG S Sbjct: 42 LEAGKTSPFPDGFDPLGLSKDKSFKELKKWREAELKHGMSLHPPRRVAMLAVLGTAVQENFHPLWGFNEKEMD--GAIFHFQEIQNVYPLFWTALLFIIGIIEARTISTGW---DENMAGSS 158
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715099|emb|CBJ27787.1| (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 96.6709 bits (239), Expect = 8.349e-21 Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 0 Query: 20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143 APFG FDP+ LS G ++KKWRE+E+KHGRVAMLA +GVL+ E + P + G GPA+ HFQE+ A P +VF +LG+A +E TI +E+P + GE + + F P + PE Sbjct: 54 APFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLF---MGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVT-GEGGLKEDYVPGDLGFDPLNLKPE 181
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|1072230584|gb|OEU15317.1| (Chloroa_b-bind-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 96.2857 bits (238), Expect = 2.239e-20 Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 0 Query: 17 GATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESP 119 GA AP G FDP+G +T +E+K++RE+EV HGRVAMLAVVG L+QE F PF+N GPA H ++ + PF F +L IA E F GWESP Sbjct: 64 GAIAPLGNFDPLGFTTDLPVQEIKRFREAEVTHGRVAMLAVVGYLVQEPFHPFFNGLV----TGPANTHLTQVHEIAPFFFAWLGGSIATAEFFRAKIGWESP 162
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715115|emb|CBJ27803.1| (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 93.5893 bits (231), Expect = 1.350e-19 Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 Query: 20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143 APF FDP+GLS G ++KKWRE+E+KHGRVAMLA +GV++ E + PF+ G GPA+ HFQE+ A P + F +LG+A +E TI +++P + GE + + F P + P+ Sbjct: 54 APFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF---MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVT-GEGGLKEDYIPGDLGFDPLNLKPD 181
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715119|emb|CBJ27807.1| (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 93.2041 bits (230), Expect = 1.716e-19 Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 Query: 20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143 APF FDP+GLS G ++KKWRE+E+KHGRVAMLA +GV++ E + PF+ G GPA+ HFQE+ A P + F +LG+A +E TI +++P + GE + + F P + P+ Sbjct: 54 APFSDGKVFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF---MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVT-GEGGLKEDYIPGDLGFDPLNLKPD 181
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715120|emb|CBJ27808.1| (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 93.2041 bits (230), Expect = 2.115e-19 Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 Query: 20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143 APF FDP+GLS G ++KKWRE+E+KHGRVAMLA +GV++ E + PF+ G GPA+ HFQE+ A P + F +LG+A +E TI +++P + GE + + F P + P+ Sbjct: 54 APFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF---MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVT-GEGGLKEDYIPGDLGFDPLNLKPD 181
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715116|emb|CBJ27804.1| (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 92.8189 bits (229), Expect = 2.448e-19 Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 Query: 20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143 APF FDP+GLS G ++KKWRE+E+KHGRVAMLA +GV++ E + PF+ G GPA+ HFQE+ A P + F +LG+A +E TI +++P + GE + + F P + P+ Sbjct: 54 APFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF---MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVT-GEGGLKEDYIPGDLGFDPLNLKPD 181 The following BLAST results are available for this feature:
BLAST of EWM23233.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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