rna7458, rna7458 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7458
Unique Name	rna7458
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1979
Alignment location	CM002471.1:647094..649517 +

Link to JBrowse

Properties


Property Name	Value
Product	light harvesting complex protein
Orig transcript id	gnl\|cribi\|Naga_101036g3.2631.mrna
Orig protein id	gnl\|cribi\|Naga_101036g3.2631
Gene	LHCP12
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:647094..649517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
LHCP12	gene7216	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7458	rna7458-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23233.1	cds7440	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:647094..649517+
coding sequence from alignment at CM002471.1:647094..649517+

mRNA sequence

>rna7458 ID=rna7458|Name=rna7458|organism=Nannochloropsis gaditana|type=mRNA|length=1979bp
GCAGTACGCAGGGTCAAACCGCTCAAGGACAGAGCTGATATCCAGAGAGT
AGTAGACATGCACTTTGAACTCTCTTTGTGGACATTGAGGGATAAAATCG
ATCGTGTTGTACGAATCGATGGGAACACGGCTCGTTGCTAGATCCGACGG
TGCGAGCTCTCGAAAAGTAATAAAGAAATAATTTCTTCTTTTTTAGTTAG
GGAGCGATCTCTTGCGTGCAACGATCTATGCGTCTGAAAACATGTACGGG
TATTTCACCAGAACCCTCCGCATGCTCATGAACCAACAAATGTGTGAGTT
CCATAAGATTCCTGCGAGGCATGCACGCGTCAAATGTCTCCGTGTTTGTT
TCGCCTGCCCCTCTGGTTTATTTCTCGCTGATGTTGCCACAGCGTGTTCT
TATTGTCCTAGCGGGAAGTCTCCGCCGGGACGACCAAAACCCTTGCCGAC
TTGGGGCACAACACTCAAACACACGCCCACAATGTGACGAAGAGCACGTT
CAAAAAGATGGAGGAGCGTGGAATCCAGCTATTCCGGGAGAGATCGTCGG
ATTTTATGAAAAATACCGTACAGGGAGGACTGCCACCTCAGTGTGGTGCG
TCAGGAAGTGCGTGTGGTGTGTTCTGCTTCGTCGTGAATAATTTTGTACC
GCCAGTCGCACACATGCTTGCGCCGAAAGACGTGTCTGAGACGAGCAATG
CGACATGGTGGACACGCCACGGTTTTGACCCGGCGGTCCAATATATTTTG
GTGGTTTGTGGAGGCTGGGTTCAGGCGCGTGGCCGGGCGTGTGCAAAGAC
GTGCGTGGTAACCTCCTGTCTCTCTTCCTTCCGCGTGGTCAGATTCAGGA
CGACGGTGCGCCACGAGGCAAGACTTGCGTTGTTTGGGAGACTTGGACTG
TGTCGTTCAAGGTTTCCTTACCGTGATGATTTGTGACGTGATCACTGTAT
GTGCCACGCGACTGAAAATATGTTCTGTGTCGGAGCCTCCGGGGACCGGT
CCACACCAATCGTCCGTACTTGCAAGCACAGAGATCTGTTTTCGAATATG
TCTCGACCACATCACTCTGTACCTATACTTACACAAGGGAACTGGTTCTC
CATGCGTAGTCAGATGGTCATGAAAAGAGGCAACGGCACGTGTAGTAGCC
CTTCCTCGTGGTTCGACATGGTCAGATCGATACCACGTACTCATCCATTT
TCAGATCTCCCATCTTCGCGCTGAATAAGTCGGGTCCTTATTTTTCTCCA
CAACCTTCAGATAAACTTGTCTATACTCTCTAGTACAATGCGTGTCCTAG
TTTCTCTCTTGGCGTGCGCGGCCACGGCCTCTGCTTTCCTTCTCCCCACT
CCTACCACGCGTCCTGCCTCGGCGCTCTTTGCGTCCACTGTGGGCGCCAA
GGACATCGTCGACACGGCCGTCGACGCAGGGTCCTTCAAGACGCTTGCCA
CCGCACTCACGGCCGCCGGCCTCGTGGAGACGCTGAAGGGACCCGGCCCT
TTCACGGTGTTCGCACCCACCGACGAGGCCTTCAACAAACTCGAGGCAGC
GACCCTGAACGCTCTTCTGGCCGACAAGGAAAAACTTACCTCCATTCTTA
CTTACCACGTCGTGTCAGGCCGCGTGCCCGCTGCCGACGTGCTGAAGCTG
ACCAGCGCCAAGACTGTGCAAGGCGGAGACGTTGCTGTTGCCGTCTCCAG
CACCGGCGTCAAGGTCAACAACGCGAACGTGGTGGCGACGGACGTGGAGG
CCTCAAACGGCATCATCCACATCATCGATTCCGTCCTCATCCCCGGTGCG
GTCGCCGCCCCCGCGGCTGCGTCTAAGGAGGTAGGGAAATCACTGGATAG
ATAGAAAGGAGAGGAAAGCGGGCTTACATGTCCCTTCTTTTTTCTACTTA
TGGATGAAAAGCCGCCCAGAACCTGGACACTCATAGCATTCTCCTGGTCT
CTCACCCCCTCTCCTCGCCCTCCCTCACT

protein sequence of rna7458

>rna7458-protein ID=rna7458-protein|Name=rna7458|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
AQVDKKSLAYREVMEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHG
RVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFL
ILGIAIVESFTISKGWESPEEMRAGESTPCQAFAFYPFSFSPEVSRFLGC
QVPVDSLCMRVEFSAIGVGGCGAPALSRRFRSRRVGERMSPHKLPMLFSS
LQAATRSRVSETRTWPATWSSTPSAWLLRRTWTRSSTSVPRSSTTVAWP

mRNA from alignment at CM002471.1:647094..649517+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7458 ID=rna7458|Name=rna7458|organism=Nannochloropsis gaditana|type=mRNA|length=2424bp|location=Sequence derived from alignment at CM002471.1:647094..649517+ (Nannochloropsis gaditana)
GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg
cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGGTACGTCG
GGGAGATGTGgtttgagggagggggaggcgggagggaagagaaagaggaa
agaattAGATGAAAAAAATGATAAAACGGGAAAGGCTAGAGATAGGGCCC
GGCAATACGGCGTCGGTGTCTCTGGGGTGAAAAATCGAAGGAGTCGCCCT
GTGCGTAGCTAGGAAAGGATCCTTGCCATGGGAAGGGTTGCGCGCGGGCC
TGACACCATCAGCTCCACTCATcttccgcctttcctccttccaacaaCAT
GCTCCcaccacctttccctccctggttccctccctcctcctcgccctcgc
cgcctgcctccagcaccgGGAAGACCTTTAAGGAACTGAAGAAGTGGCGC
GAGTCCGAGGTCAAGCACGGTACGTGTCTTCATGACAGAGAGTACGAGAG
GGGCATGGGTGCCTTTGAAATTTGTTCTGTCATGGGCCGCCATCCTGGTT
GCGTCTGTCTAATGTCACTCTATTTCTCTACCCTACCCttgcaccctccc
tccctcttgccccccctttACGCCGTCTCAGGTCGGGTTGCCATGCTGGC
CGTcgtcggcgtcctcctccaggaggtTTTCGCGCCTTTCTACAACCCCG
AGACCGGCAGCAGCGACCCTGGCCCCGCCATTTTCCACTTCCAGGTACCC
GCTCGTTGTCTGAGTGTTTCTAGAAGCTTTGTGGTTTTCAATGCCGTATT
TTGTTGGCTCAATATACGCACATACATGTGTATATGAACTACCGACCAGA
GGGCCTGGGTACTACTGGGCGTACATGTGCCGTGCAGCCTTTTCTCACAT
TTTGTTTCCCCGCGTCCGTCcatgctccccccctcgtctctaggagctgg
aggccctcaaccctttcctcttcgtttTCCTCATTCTGGGCATCGCCATC
GTCGAGTCCTTCACCATCAGCAAAGGCTGGGAGTCTCCGGAGGAAATGCG
CGCCGGTGAGTCAACGCCCTGCCAGGCTTTTGCGTTTtaccctttctctt
tttctcctgaGGTTTCCCGGTTTTTGGGGTGTCAGGTTCCCGTCGATTCC
CTGTGTATGCGTGTCGAATTCTCGGCGATAGGGGTCGGAGGGTGTGGGGC
CCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAAGGGTAGGTGAGCGAATGA
GTCCTCACAAACTTCCTATGTTGTTTTCTTCTCTGCAGGCGGCAACACGA
TCGCGGGTCTCCGAGACACGTACGTGGCCGGCGACTTGGAGTTCGACCCC
CTCGGTgagtggcggggagggaaaggaccaAGGAccacaagggagggagg
ggggcgggaaacaGGGAAAGTTTCGATGTATTATTTACCACAGGGGTCTA
TGTGATGGTCTTGTGGGGCTCTTGCGTGACGTTGCATTGCCCGACAGTCG
TGGAGCGGTGGCGGTTGCTTCCCGGCTCAGCCACGCCAGATGGGCCCAAG
AACGTCGGACTCGTGGGGGGCCTGTCACCcccgaacctcctctcccggtc
TCACCAATCCCTCGtccgctttctcttcctccaggcctGGCTCCTACGGC
GGACGTGGACGCGTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTC
GCTTGGCCATGATTGCTTGGGCGGGCATGGTCGTCCAAGAGCTGATCTCC
AACTCAAAAATCTTCTCCTAAGCCTTCGTTTCATGGActggaaaagagag
gaagacggaaaagaagaaagaccAGGCGGAGCTTGAGTGGAGTGTCTGAG
AGGTGGTGATGATGCTGGTGCAATCGTTTTGATGAGTAGTTTGTATTTGG
GCGAAGGAGAGTTGCCATTTTTTGCCATGCCGGTCCTCGATTTCGACCGA
GCAAGTGCAAACTTTGTTTTTCATGTGGAGGTGGTTCCAGACGCTCTCTT
GGCTGTGACGGAGGCGTGAGTCGAGAGATCCGAGCGCGAGCATTTCAGTG
CCttcctttttaaaaaaagggTTGAGAGCGTTCGTCTCTCAACCAGGTTT
TTCTGTAATTTTTGAGCCCAAACACGAGCTGAGAAAGCTGTGGGATTGTC
ATCAGACCTGAGTTTTGCAAGCGAACGAAAAGACCGGGTTGGGGGAAAAG
CGGTATGTCTTTTTAAGTAGGGTGCAGAAATATGAATGAGAGCTGACAAA
CCGGAAACCAACAAACAAATCAAATAGGAGAATCATGAAAAGTTGATTCC
AGCCTTTTCCTTCAAGAATTCGTACAAATTTAAGCTGCGGGTGTCCACAC
CGCTATTGCCTGACGTCGAGTGAACCATAGGTTCATGAGCTGGGAGGATT
GTGCCGCACGGACTTGATCACTGA

Coding sequence (CDS) from alignment at CM002471.1:647094..649517+

>rna7458 ID=rna7458|Name=rna7458|organism=Nannochloropsis gaditana|type=CDS|length=3750bp|location=Sequence derived from alignment at CM002471.1:647094..649517+ (Nannochloropsis gaditana)
GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg
cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA
AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT
CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC
GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT
TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC
ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA
GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG
CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT
CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG
GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA
GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT
CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC
GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC
GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA
GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg
cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA
AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT
CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC
GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT
TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC
ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA
GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG
CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT
CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG
GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA
GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT
CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC
GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC
GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA
GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg
cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA
AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT
CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC
GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT
TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC
ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA
GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG
CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT
CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG
GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA
GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT
CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC
GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC
GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA
GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg
cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA
AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT
CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC
GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT
TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC
ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA
GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG
CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT
CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG
GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA
GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT
CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC
GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC
GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA
GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg
cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA
AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT
CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC
GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT
TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC
ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA
GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG
CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT
CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG
GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA
GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT
CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC
GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC
GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA

Synonyms

Publications