EWM23233.1, cds7440 (CDS) Nannochloropsis gaditana

Overview
NameEWM23233.1
Unique Namecds7440
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:647094..647185 +
Alignment locationCM002471.1:647507..647562 +
Alignment locationCM002471.1:647725..647837 +
Alignment locationCM002471.1:648037..648447 +
Alignment locationCM002471.1:648728..648805 +

Link to JBrowse

Properties
Property NameValue
Start range647094
Start range.
Protein idEWM23233.1
Productlight harvesting complex protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101036g3.2631.mrna
GeneLHCP12
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:647094..647185 +
CM002471.1supercontigCM002471.1:647507..647562 +
CM002471.1supercontigCM002471.1:647725..647837 +
CM002471.1supercontigCM002471.1:648037..648447 +
CM002471.1supercontigCM002471.1:648728..648805 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0009507chloroplast
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
GO:0009765photosynthesis, light harvesting
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR023329Chlorophyll_a/b-bd_dom
IPR022796Chloroa_b-bind
Homology
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|585104180|gb|EWM23233.1| (light harvesting complex protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 502.671 bits (1293), Expect = 6.706e-180
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0 
Query:    1 AQVDKKSLAYREVMEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAFAFYPFSFSPEVSRFLGCQVPVDSLCMRVEFSAIGVGGCGAPALSRRFRSRRVGERMSPHKLPMLFSSLQAATRSRVSETRTWPATWSSTPSAWLLRRTWTRSSTSVPRSSTTVAWP 249
            AQVDKKSLAYREVMEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAFAFYPFSFSPEVSRFLGCQVPVDSLCMRVEFSAIGVGGCGAPALSRRFRSRRVGERMSPHKLPMLFSSLQAATRSRVSETRTWPATWSSTPSAWLLRRTWTRSSTSVPRSSTTVAWP
Sbjct:    1 AQVDKKSLAYREVMEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAFAFYPFSFSPEVSRFLGCQVPVDSLCMRVEFSAIGVGGCGAPALSRRFRSRRVGERMSPHKLPMLFSSLQAATRSRVSETRTWPATWSSTPSAWLLRRTWTRSSTSVPRSSTTVAWP 249
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|553193068|ref|XP_005855703.1| (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >gi|422293355|gb|EKU20655.1| light harvesting complex protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 233.032 bits (593), Expect = 1.919e-74
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0 
Query:   14 MEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGEST 128
            MEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAG +T
Sbjct:    1 MEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGGNT 115
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|553180326|ref|XP_005853385.1| (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >gi|422295676|gb|EKU22975.1| light harvesting complex protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 108.612 bits (270), Expect = 1.802e-25
Identity = 60/115 (52.17%), Postives = 77/115 (66.96%), Query Frame = 0 
Query:   14 MEAGATAPF-GFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGES 127
            +EAG T+PF   FDP+GLS  K+FKELKKWRE+E+KHGRVAMLAV+G  +QE F P +       D   AIFHFQE++ + P  +  L+  I I+E+ TIS GW   +E  AG S
Sbjct:    8 LEAGKTSPFPDGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENFHPLWGFNEKEMD--GAIFHFQEIQNVYPLFWTALLFIIGIIEARTISTGW---DENMAGSS 117
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|585112704|gb|EWM30071.1| (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 102.449 bits (254), Expect = 7.630e-23
Identity = 60/122 (49.18%), Postives = 77/122 (63.11%), Query Frame = 0 
Query:   14 MEAGATAPF-GFFDPIGLSTGKTFKELKKWRESEVKHG-------RVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGES 127
            +EAG T+PF   FDP+GLS  K+FKELKKWRE+E+KHG       RVAMLAV+G  +QE F P +       D   AIFHFQE++ + P  +  L+  I I+E+ TIS GW   +E  AG S
Sbjct:   42 LEAGKTSPFPDGFDPLGLSKDKSFKELKKWREAELKHGMSLHPPRRVAMLAVLGTAVQENFHPLWGFNEKEMD--GAIFHFQEIQNVYPLFWTALLFIIGIIEARTISTGW---DENMAGSS 158
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715099|emb|CBJ27787.1| (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 96.6709 bits (239), Expect = 8.349e-21
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 0 
Query:   20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143
            APFG    FDP+ LS G    ++KKWRE+E+KHGRVAMLA +GVL+ E + P +    G    GPA+ HFQE+ A  P  +VF +LG+A +E  TI   +E+P  +  GE    + +      F P +  PE
Sbjct:   54 APFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLF---MGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVT-GEGGLKEDYVPGDLGFDPLNLKPE 181
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|1072230584|gb|OEU15317.1| (Chloroa_b-bind-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 96.2857 bits (238), Expect = 2.239e-20
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 0 
Query:   17 GATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESP 119
            GA AP G FDP+G +T    +E+K++RE+EV HGRVAMLAVVG L+QE F PF+N        GPA  H  ++  + PF F +L   IA  E F    GWESP
Sbjct:   64 GAIAPLGNFDPLGFTTDLPVQEIKRFREAEVTHGRVAMLAVVGYLVQEPFHPFFNGLV----TGPANTHLTQVHEIAPFFFAWLGGSIATAEFFRAKIGWESP 162
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715115|emb|CBJ27803.1| (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 93.5893 bits (231), Expect = 1.350e-19
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 
Query:   20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143
            APF     FDP+GLS G    ++KKWRE+E+KHGRVAMLA +GV++ E + PF+    G    GPA+ HFQE+ A  P  + F +LG+A +E  TI   +++P  +  GE    + +      F P +  P+
Sbjct:   54 APFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF---MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVT-GEGGLKEDYIPGDLGFDPLNLKPD 181
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715119|emb|CBJ27807.1| (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 93.2041 bits (230), Expect = 1.716e-19
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 
Query:   20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143
            APF     FDP+GLS G    ++KKWRE+E+KHGRVAMLA +GV++ E + PF+    G    GPA+ HFQE+ A  P  + F +LG+A +E  TI   +++P  +  GE    + +      F P +  P+
Sbjct:   54 APFSDGKVFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF---MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVT-GEGGLKEDYIPGDLGFDPLNLKPD 181
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715120|emb|CBJ27808.1| (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 93.2041 bits (230), Expect = 2.115e-19
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 
Query:   20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143
            APF     FDP+GLS G    ++KKWRE+E+KHGRVAMLA +GV++ E + PF+    G    GPA+ HFQE+ A  P  + F +LG+A +E  TI   +++P  +  GE    + +      F P +  P+
Sbjct:   54 APFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF---MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVT-GEGGLKEDYIPGDLGFDPLNLKPD 181
[Close]
BLAST of EWM23233.1 vs. NCBI_GenBank
Match: gi|298715116|emb|CBJ27804.1| (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 92.8189 bits (229), Expect = 2.448e-19
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 
Query:   20 APFG---FFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGESTPCQAF-----AFYPFSFSPE 143
            APF     FDP+GLS G    ++KKWRE+E+KHGRVAMLA +GV++ E + PF+    G    GPA+ HFQE+ A  P  + F +LG+A +E  TI   +++P  +  GE    + +      F P +  P+
Sbjct:   54 APFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF---MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVT-GEGGLKEDYIPGDLGFDPLNLKPD 181
The following BLAST results are available for this feature:
BLAST of EWM23233.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104180|gb|EWM23233.1|6.706e-180100.00light harvesting complex protein, partial [Nannoch... [more]
gi|553193068|ref|XP_005855703.1|1.919e-7498.26light harvesting complex protein [Nannochloropsis ... [more]
gi|553180326|ref|XP_005853385.1|1.802e-2552.17light harvesting complex protein [Nannochloropsis ... [more]
gi|585112704|gb|EWM30071.1|7.630e-2349.18light harvesting complex protein [Nannochloropsis ... [more]
gi|298715099|emb|CBJ27787.1|8.349e-2142.42Light harvesting complex protein [Ectocarpus silic... [more]
gi|1072230584|gb|OEU15317.1|2.239e-2049.51Chloroa_b-bind-domain-containing protein [Fragilar... [more]
gi|298715115|emb|CBJ27803.1|1.350e-1940.15Light harvesting complex protein [Ectocarpus silic... [more]
gi|298715119|emb|CBJ27807.1|1.716e-1940.15Light harvesting complex protein [Ectocarpus silic... [more]
gi|298715120|emb|CBJ27808.1|2.115e-1940.15Light harvesting complex protein [Ectocarpus silic... [more]
gi|298715116|emb|CBJ27804.1|2.448e-1940.15Light harvesting complex protein [Ectocarpus silic... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7458rna7458Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications