|
Properties
Property Name | Value |
Product | light harvesting complex protein |
Orig transcript id | gnl|cribi|Naga_101036g3.2631.mrna |
Orig protein id | gnl|cribi|Naga_101036g3.2631 |
Gene | LHCP12 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002471.1 | supercontig | CM002471.1:647094..649517 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7458 ID=rna7458|Name=rna7458|organism=Nannochloropsis gaditana|type=mRNA|length=1979bp GCAGTACGCAGGGTCAAACCGCTCAAGGACAGAGCTGATATCCAGAGAGT AGTAGACATGCACTTTGAACTCTCTTTGTGGACATTGAGGGATAAAATCG ATCGTGTTGTACGAATCGATGGGAACACGGCTCGTTGCTAGATCCGACGG TGCGAGCTCTCGAAAAGTAATAAAGAAATAATTTCTTCTTTTTTAGTTAG GGAGCGATCTCTTGCGTGCAACGATCTATGCGTCTGAAAACATGTACGGG TATTTCACCAGAACCCTCCGCATGCTCATGAACCAACAAATGTGTGAGTT CCATAAGATTCCTGCGAGGCATGCACGCGTCAAATGTCTCCGTGTTTGTT TCGCCTGCCCCTCTGGTTTATTTCTCGCTGATGTTGCCACAGCGTGTTCT TATTGTCCTAGCGGGAAGTCTCCGCCGGGACGACCAAAACCCTTGCCGAC TTGGGGCACAACACTCAAACACACGCCCACAATGTGACGAAGAGCACGTT CAAAAAGATGGAGGAGCGTGGAATCCAGCTATTCCGGGAGAGATCGTCGG ATTTTATGAAAAATACCGTACAGGGAGGACTGCCACCTCAGTGTGGTGCG TCAGGAAGTGCGTGTGGTGTGTTCTGCTTCGTCGTGAATAATTTTGTACC GCCAGTCGCACACATGCTTGCGCCGAAAGACGTGTCTGAGACGAGCAATG CGACATGGTGGACACGCCACGGTTTTGACCCGGCGGTCCAATATATTTTG GTGGTTTGTGGAGGCTGGGTTCAGGCGCGTGGCCGGGCGTGTGCAAAGAC GTGCGTGGTAACCTCCTGTCTCTCTTCCTTCCGCGTGGTCAGATTCAGGA CGACGGTGCGCCACGAGGCAAGACTTGCGTTGTTTGGGAGACTTGGACTG TGTCGTTCAAGGTTTCCTTACCGTGATGATTTGTGACGTGATCACTGTAT GTGCCACGCGACTGAAAATATGTTCTGTGTCGGAGCCTCCGGGGACCGGT CCACACCAATCGTCCGTACTTGCAAGCACAGAGATCTGTTTTCGAATATG TCTCGACCACATCACTCTGTACCTATACTTACACAAGGGAACTGGTTCTC CATGCGTAGTCAGATGGTCATGAAAAGAGGCAACGGCACGTGTAGTAGCC CTTCCTCGTGGTTCGACATGGTCAGATCGATACCACGTACTCATCCATTT TCAGATCTCCCATCTTCGCGCTGAATAAGTCGGGTCCTTATTTTTCTCCA CAACCTTCAGATAAACTTGTCTATACTCTCTAGTACAATGCGTGTCCTAG TTTCTCTCTTGGCGTGCGCGGCCACGGCCTCTGCTTTCCTTCTCCCCACT CCTACCACGCGTCCTGCCTCGGCGCTCTTTGCGTCCACTGTGGGCGCCAA GGACATCGTCGACACGGCCGTCGACGCAGGGTCCTTCAAGACGCTTGCCA CCGCACTCACGGCCGCCGGCCTCGTGGAGACGCTGAAGGGACCCGGCCCT TTCACGGTGTTCGCACCCACCGACGAGGCCTTCAACAAACTCGAGGCAGC GACCCTGAACGCTCTTCTGGCCGACAAGGAAAAACTTACCTCCATTCTTA CTTACCACGTCGTGTCAGGCCGCGTGCCCGCTGCCGACGTGCTGAAGCTG ACCAGCGCCAAGACTGTGCAAGGCGGAGACGTTGCTGTTGCCGTCTCCAG CACCGGCGTCAAGGTCAACAACGCGAACGTGGTGGCGACGGACGTGGAGG CCTCAAACGGCATCATCCACATCATCGATTCCGTCCTCATCCCCGGTGCG GTCGCCGCCCCCGCGGCTGCGTCTAAGGAGGTAGGGAAATCACTGGATAG ATAGAAAGGAGAGGAAAGCGGGCTTACATGTCCCTTCTTTTTTCTACTTA TGGATGAAAAGCCGCCCAGAACCTGGACACTCATAGCATTCTCCTGGTCT CTCACCCCCTCTCCTCGCCCTCCCTCACT back to topprotein sequence of rna7458 >rna7458-protein ID=rna7458-protein|Name=rna7458|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp AQVDKKSLAYREVMEAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHG RVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFL ILGIAIVESFTISKGWESPEEMRAGESTPCQAFAFYPFSFSPEVSRFLGC QVPVDSLCMRVEFSAIGVGGCGAPALSRRFRSRRVGERMSPHKLPMLFSS LQAATRSRVSETRTWPATWSSTPSAWLLRRTWTRSSTSVPRSSTTVAWP back to topmRNA from alignment at CM002471.1:647094..649517+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7458 ID=rna7458|Name=rna7458|organism=Nannochloropsis gaditana|type=mRNA|length=2424bp|location=Sequence derived from alignment at CM002471.1:647094..649517+ (Nannochloropsis gaditana) GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg
cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGGTACGTCG
GGGAGATGTGgtttgagggagggggaggcgggagggaagagaaagaggaa
agaattAGATGAAAAAAATGATAAAACGGGAAAGGCTAGAGATAGGGCCC
GGCAATACGGCGTCGGTGTCTCTGGGGTGAAAAATCGAAGGAGTCGCCCT
GTGCGTAGCTAGGAAAGGATCCTTGCCATGGGAAGGGTTGCGCGCGGGCC
TGACACCATCAGCTCCACTCATcttccgcctttcctccttccaacaaCAT
GCTCCcaccacctttccctccctggttccctccctcctcctcgccctcgc
cgcctgcctccagcaccgGGAAGACCTTTAAGGAACTGAAGAAGTGGCGC
GAGTCCGAGGTCAAGCACGGTACGTGTCTTCATGACAGAGAGTACGAGAG
GGGCATGGGTGCCTTTGAAATTTGTTCTGTCATGGGCCGCCATCCTGGTT
GCGTCTGTCTAATGTCACTCTATTTCTCTACCCTACCCttgcaccctccc
tccctcttgccccccctttACGCCGTCTCAGGTCGGGTTGCCATGCTGGC
CGTcgtcggcgtcctcctccaggaggtTTTCGCGCCTTTCTACAACCCCG
AGACCGGCAGCAGCGACCCTGGCCCCGCCATTTTCCACTTCCAGGTACCC
GCTCGTTGTCTGAGTGTTTCTAGAAGCTTTGTGGTTTTCAATGCCGTATT
TTGTTGGCTCAATATACGCACATACATGTGTATATGAACTACCGACCAGA
GGGCCTGGGTACTACTGGGCGTACATGTGCCGTGCAGCCTTTTCTCACAT
TTTGTTTCCCCGCGTCCGTCcatgctccccccctcgtctctaggagctgg
aggccctcaaccctttcctcttcgtttTCCTCATTCTGGGCATCGCCATC
GTCGAGTCCTTCACCATCAGCAAAGGCTGGGAGTCTCCGGAGGAAATGCG
CGCCGGTGAGTCAACGCCCTGCCAGGCTTTTGCGTTTtaccctttctctt
tttctcctgaGGTTTCCCGGTTTTTGGGGTGTCAGGTTCCCGTCGATTCC
CTGTGTATGCGTGTCGAATTCTCGGCGATAGGGGTCGGAGGGTGTGGGGC
CCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAAGGGTAGGTGAGCGAATGA
GTCCTCACAAACTTCCTATGTTGTTTTCTTCTCTGCAGGCGGCAACACGA
TCGCGGGTCTCCGAGACACGTACGTGGCCGGCGACTTGGAGTTCGACCCC
CTCGGTgagtggcggggagggaaaggaccaAGGAccacaagggagggagg
ggggcgggaaacaGGGAAAGTTTCGATGTATTATTTACCACAGGGGTCTA
TGTGATGGTCTTGTGGGGCTCTTGCGTGACGTTGCATTGCCCGACAGTCG
TGGAGCGGTGGCGGTTGCTTCCCGGCTCAGCCACGCCAGATGGGCCCAAG
AACGTCGGACTCGTGGGGGGCCTGTCACCcccgaacctcctctcccggtc
TCACCAATCCCTCGtccgctttctcttcctccaggcctGGCTCCTACGGC
GGACGTGGACGCGTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTC
GCTTGGCCATGATTGCTTGGGCGGGCATGGTCGTCCAAGAGCTGATCTCC
AACTCAAAAATCTTCTCCTAAGCCTTCGTTTCATGGActggaaaagagag
gaagacggaaaagaagaaagaccAGGCGGAGCTTGAGTGGAGTGTCTGAG
AGGTGGTGATGATGCTGGTGCAATCGTTTTGATGAGTAGTTTGTATTTGG
GCGAAGGAGAGTTGCCATTTTTTGCCATGCCGGTCCTCGATTTCGACCGA
GCAAGTGCAAACTTTGTTTTTCATGTGGAGGTGGTTCCAGACGCTCTCTT
GGCTGTGACGGAGGCGTGAGTCGAGAGATCCGAGCGCGAGCATTTCAGTG
CCttcctttttaaaaaaagggTTGAGAGCGTTCGTCTCTCAACCAGGTTT
TTCTGTAATTTTTGAGCCCAAACACGAGCTGAGAAAGCTGTGGGATTGTC
ATCAGACCTGAGTTTTGCAAGCGAACGAAAAGACCGGGTTGGGGGAAAAG
CGGTATGTCTTTTTAAGTAGGGTGCAGAAATATGAATGAGAGCTGACAAA
CCGGAAACCAACAAACAAATCAAATAGGAGAATCATGAAAAGTTGATTCC
AGCCTTTTCCTTCAAGAATTCGTACAAATTTAAGCTGCGGGTGTCCACAC
CGCTATTGCCTGACGTCGAGTGAACCATAGGTTCATGAGCTGGGAGGATT
GTGCCGCACGGACTTGATCACTGA back to topCoding sequence (CDS) from alignment at CM002471.1:647094..649517+ >rna7458 ID=rna7458|Name=rna7458|organism=Nannochloropsis gaditana|type=CDS|length=3750bp|location=Sequence derived from alignment at CM002471.1:647094..649517+ (Nannochloropsis gaditana) GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA GCTCAGGTGGACAAGAAGAGCCTGGCCTACCgcgaggtgatggaggcggg cgccaCGGCTCCCTTTGGCTTCTTTGACCCCATCGGGCTCAGcaccgGGA AGACCTTTAAGGAACTGAAGAAGTGGCGCGAGTCCGAGGTCAAGCACGGT CGGGTTGCCATGCTGGCCGTcgtcggcgtcctcctccaggaggtTTTCGC GCCTTTCTACAACCCCGAGACCGGCAGCAGCGACCCTGGCCCCGCCATTT TCCACTTCCAGgagctggaggccctcaaccctttcctcttcgtttTCCTC ATTCTGGGCATCGCCATCGTCGAGTCCTTCACCATCAGCAAAGGCTGGGA GTCTCCGGAGGAAATGCGCGCCGGTGAGTCAACGCCCTGCCAGGCTTTTG CGTTTtaccctttctctttttctcctgaGGTTTCCCGGTTTTTGGGGTGT CAGGTTCCCGTCGATTCCCTGTGTATGCGTGTCGAATTCTCGGCGATAGG GGTCGGAGGGTGTGGGGCCCCGGCCCTAAGTCGTCGGTTCCGCAGTCGAA GGGTAGGTGAGCGAATGAGTCCTCACAAACTTCCTATGTTGTTTTCTTCT CTGCAGGCGGCAACACGATCGCGGGTCTCCGAGACACGTACGTGGCCGGC GACTTGGAGTTCGACCCCCTCGgcctGGCTCCTACGGCGGACGTGGACGC GTTCATCAACCAGCGTTCCAAGGAGCTCAACAACGGTCGCTTGGCCATGA back to top
|