rna7430, rna7430 (mRNA) Nannochloropsis gaditana

Overview
Namerna7430
Unique Namerna7430
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length530
Alignment locationCM002471.1:567351..568055 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102012g1.5753.mrna
Orig protein idgnl|cribi|Naga_102012g1.5753
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:567351..568055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102012g1gene7189Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7430rna7430-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23261.1cds7412Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7430 ID=rna7430|Name=rna7430|organism=Nannochloropsis gaditana|type=mRNA|length=530bp
AGGGCGTTTGCACGGATGTCGCCGCTTCTTAGGAGCATTGGTCGTGTCTT
CCTCGACGGCAATGGCGCCCCCCGTATCTCTCCTTCCCTCCCTCCCTCTT
ACCTACCTCTTCTCTTTCCCTCCCTGTTAGGACTGGCGTGCGCGATAATG
ATTTCCACTTACGAAGGGGGAAAGTACTGGATGTTGAGGAAAAAGGTCCC
AGACGGCGAACTCCCCCTCTCTCCCTCCCGCCCTCCCTCCCACCCTCCAC
CCGCAGTCAAGTCGAGCGATGGAAGTGGGGGTGTGGCAGACGGGGACAAG
GGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGCATCGGCGGTCATAGG
GGGAAGGGGGGAGGAAAAGAATCTTGTAAGATAAGTCTGCGAGGAGGGAG
GAAGGGGAGAGAGTAAGGAGAAAGAGGAGAGGGAGGGAGCAATGCGAGGC
GCAAGGATGAGTAATCGAGTCGTGTGCGGCCGTGTAAATAGCAAATTGAT
GAGGAAAAGAAAGCAGCTCTTAGACTTGTG
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protein sequence of rna7430

>rna7430-protein ID=rna7430-protein|Name=rna7430|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MTRGRGGRALQGSLPPTLPPSLPPFIDTSPLPFLLSSFVGTRASCYDSFR
VMSLQSFLLFLHSFPSPCFYHFAYLSRSIRLPFIHARSATNNTGVFLSSF
VLLSSVHILYAFFLPSSSLLPLPFPPCILPLSATTAGTHLAKQNKGIQAA
TKALWRDIARLSKDPSTLPPPSSLSSPTPLVLNEALYPPTRLARLLSLQR
QHDHAAVDAE
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mRNA from alignment at CM002471.1:567351..568055+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7430 ID=rna7430|Name=rna7430|organism=Nannochloropsis gaditana|type=mRNA|length=705bp|location=Sequence derived from alignment at CM002471.1:567351..568055+ (Nannochloropsis gaditana)
AAATTTCTTGAGCCAGCGTGTGGAGGCAACATTCGGCACTCTCATGACCC
GCGACGGCAGATTTTAAGTGCGAGATGACaaggggtaggggaggtCGGGC
TCTACAAGGtagcctccctcctaccctccctccctccctccctcccttca
tcgatacctccccgcttcctttccttctctcttcatTTGTAGGAACACGC
GCATCTTGCTATGATTCTTTTCGCGTGATGTCCCTTcaatccttccttct
tttcctccattccttcccttcacccTGCTTTTATCATTTCGCATACCTGT
CTCGATCCATTCGTCTTCCGTTCATCCACGCACGCTCTGCCACAAACAAC
ACAGgcgtcttcctttcctccttcgtcctcctctcctctgtccATATCCT
CTatgcttttttcctcccttcctcctccctcctgccgcttCCATTTCCAC
CCTGTATACTACCTCTCTCCGCGACCACGGCGGGCACGCACCTTGCCAAA
CAAAACAAGGGCATACAGGCCGCTACCAAGGCCCTTTGGCGTGACATCGC
TCGTCTAAGCAAGGATccgtccaccctccctcccccctcctccctttcct
ctcccacccctctcgtCCTGAATGAGGCGCTCTATCCGCCCACGCGCCTC
GCGCGCCTCCTGTCTCTCCAGCGGCAGCACGACCACGCGGCGGTGGATGC
GGAAA
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Coding sequence (CDS) from alignment at CM002471.1:567351..568055+

>rna7430 ID=rna7430|Name=rna7430|organism=Nannochloropsis gaditana|type=CDS|length=631bp|location=Sequence derived from alignment at CM002471.1:567351..568055+ (Nannochloropsis gaditana)
ATGACaaggggtaggggaggtCGGGCTCTACAAGGtagcctccctcctac
cctccctccctccctccctcccttcatcgatacctccccgcttcctttcc
ttctctcttcatTTGTAGGAACACGCGCATCTTGCTATGATTCTTTTCGC
GTGATGTCCCTTcaatccttccttcttttcctccattccttcccttcacc
cTGCTTTTATCATTTCGCATACCTGTCTCGATCCATTCGTCTTCCGTTCA
TCCACGCACGCTCTGCCACAAACAACACAGgcgtcttcctttcctccttc
gtcctcctctcctctgtccATATCCTCTatgcttttttcctcccttcctc
ctccctcctgccgcttCCATTTCCACCCTGTATACTACCTCTCTCCGCGA
CCACGGCGGGCACGCACCTTGCCAAACAAAACAAGGGCATACAGGCCGCT
ACCAAGGCCCTTTGGCGTGACATCGCTCGTCTAAGCAAGGATccgtccac
cctccctcccccctcctccctttcctctcccacccctctcgtCCTGAATG
AGGCGCTCTATCCGCCCACGCGCCTCGCGCGCCTCCTGTCTCTCCAGCGG
CAGCACGACCACGCGGCGGTGGATGCGGAAA
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Synonyms
Publications