rna7391, rna7391 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7391
Unique Name	rna7391
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2054
Alignment location	CM002471.1:473172..475495 -

Link to JBrowse

Properties


Property Name	Value
Product	long-chain acyl- synthetase
Orig transcript id	gnl\|cribi\|Naga_100158g20.7789.mrna
Orig protein id	gnl\|cribi\|Naga_100158g20.7789
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:473172..475495 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100158g20	gene7150	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7391	rna7391-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23293.1	cds7374	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:473172..475495-
coding sequence from alignment at CM002471.1:473172..475495-

mRNA sequence

>rna7391 ID=rna7391|Name=rna7391|organism=Nannochloropsis gaditana|type=mRNA|length=2054bp
ACCTTCCTCCCCCTCTCCCTTCCCCCCTCCCTCCTCCCTCTTGCAGAGCT
GGCCAACCTGCCCCCTCCCACACAGGTGCTCACCTTCGACGAGGCCCTCT
CCGCCTCCCTGGCCCGGCCCCTGACCTTCCGGCCCGTCCCTAAGGACGTG
CGCTCTGTGGCCACCCTAGTCTACACGTCGGGGACCACCAACAAGCCCAA
GGGCGTCGTCCTCCGGCACTCGAACCTGCTGCACCAGGTCAATTACAACT
CCTTCACGGATTCCCCTTCCAAAGAGCCCGCCTACAACCCCGTCCTGGGT
GATGTCCTCGTCTCGGTCCTTCCCTGCTGGCACATCTTCGAGCGCACCGC
CGAGTACTGGATGTTCAGCAAGGGGATCCACGTCGTCTACTCAAACGTCA
AGAACTTCAAGGCCGACCTGGCCAAGCACCAACCCCAATTCATCGTCGCA
GTTCCCCGGCTCTTGGAAACGATTTACCGGGGCGTCTTGCAAAAGTTTGC
TGCGGAAAAAGGCGCGAAAAAGAAGATCATCGAATTTTTCACCCGCGTGG
GGTCGGCCTGGGTCAAGGCCTGGCGCGTGGCCCGCGGTTTGGTCCTGCGC
TCGAGGGCGCCCAACCCGATCGAACGCCTCCTCGCGCTCGTCCTCGCCCT
CGTCCTTAGCCCCCTGGCCGCCGTGGGGGACAAGCTCGTCTGGAGTAAAG
TGCGGGCAGGTCTGGGTGGGAGGATCAAGGTCTTGGTGGCCGGCGGGAGC
TCCATGCCTCTGGTCCTGGAGGACTTCTTCGAGCTCCTGCGGACGCCCGT
GATCGTGGGCTACGGGATGACGGAGACATCGCCGGTGATCACGAATCGCG
TGGCGGAAAAGAATTTGGCGGGCTCGGTGGGGCGGACGGCGCGAGACACG
GAGGTGAAGATTGTGGACCCGGAGTCGGGGGCCCGGTTGCCTGAGGGGCA
GCCGGGCTTGGTCTTGATGCGGGGTCCGCAGATGATGGCTGGCTACAAGA
GCAATGCGGAGGCGAGCAAGGCTGTCTTGGACCAGGAGGGCTTCCTGGAC
ACGGGGGACCTGGGCAGGATCCACCCTCTGACGAAGCACTTGATCATCAC
GGGCCGGGCCAAGGACACGATCGTCCTCAGCAACGGCGAGAACGTGGAGC
CGCAGCCCATCGAGGACGTGGTTTGCGCGAACTCAGCATTGGTAGACCAG
GTCATGTGCGTCGGGCAGGATGAGAAAGTGCTAGGGATGCTGGTGGTGCC
CAACGTGAGGGCCTTGGCGCGGGCGGGACTGGTGGACAGGGGCCTGGCCG
AGCGGGTGGCCGAGTTATTGGGAGGGCAGGTCCTGACGAACGGGATCGCG
GGGAGTCGAGCTGAGCTGGAGGAGGTGGAAGCCAGCCTGAGGGAGAAGAA
GGAGGTGAAGAAGGCGTTGCTGGCGGATATTGCGCGGGCGATGGGAAAGT
CGTTCAGGGAGACGGAGCGGGTAGGGGCGGTGGAGGTGGTGCTGGAACCC
TTCAACATGGCGAATGGTTTCTTGACACAGACCTTGAAGGTGAAGAGGAA
CGTGGTGAGCGGACACTACGCCCAGGAGATCGAGCAGATGTACCGATGAG
TTTGGACGGAGCAGGGAAATTGGTGTCTCAGGAGAAAAAGGAGGAGGAAA
GGCGTGTGTGTGGACGCACGGAGGGATTTGAGGGTGGTGGTGACGAAAGA
AGGGGATCAGACACTTAAGGAGCTTCTTTTATTTAAGGGCGAGAGCACGT
TTTCGAATAAAAGCGTATGAAAGAAAAAAATCATGAGGTCCACTAGTAAG
CAAAAAAATGTTGAAGCAAGCAAAGCCCCAGCGCAGTATAGAGCTTGTGT
GTGAGGACATGAGTATATCGGCTTCGATCAAATCGTTCCCTTGGTAATCT
TGTCTTGTACTCAGTCTCGCGGAAAAGTTAGCAACGCGACAGATCATGGG
CATCGAGATCAGATCCGTGTTAAGGAGACTGAAAAGGAAGAGGCAGGCCA
CGAACGTGATCTGTCAGCTGCTTGACACTGGTCTTTTCTGGCAAAGCATT
GGAC

protein sequence of rna7391

>rna7391-protein ID=rna7391-protein|Name=rna7391|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MRGRTTPPRPAPPLLSPLLLCTFFFTLVASFSIPPHRIATRPSFAPLPLP
LPKSPLWGPSPSLPPPLPSPSPPPSACPSTLFANSPTTTNYPSEAKFGDL
PYAPGQVKTGTYLRGMDRYKWRTLPDVFETVASLAPEAVAVEDMVHTPTA
KMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAG
ACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYG
PPRFILVLFPGERSGQEIRGTQAGEG

mRNA from alignment at CM002471.1:473172..475495-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7391 ID=rna7391|Name=rna7391|organism=Nannochloropsis gaditana|type=mRNA|length=2324bp|location=Sequence derived from alignment at CM002471.1:473172..475495- (Nannochloropsis gaditana)
CAGCCTCTAACAAAAGGTCTTGTGACCTATCTCCTGGACCCGCCTTACCT
AGAAAGGATGCAGACATCACCGGCGCGTGTCGCCCGCGCTCGAGGACCCT
GTGACGATGCGCATGGGGAGTAAAAACTCTCAGTATCGAACGGATCCATC
TTCTGTGTCATTCACGAGGACAAGAAGGTGGGTGGGAGGGGCTCAGACAA
CAAAGTTCTTCTCATCTACGAGGCAACCCAGGCGGAGCCCGAGCAGACGC
AGAAATAGACCAGGTAAAACGGCGGTATGTTGATAAAATGCATCTTGGCC
ATCCTCAAGTACTAAGAAACTGGTTTGTACCGTTCATGTACTCCCCTTTC
GACGTCAACCTCGTGCACTCACCTCTCATCATGCGGTTCCAATTGCTGAC
AGTCTGAAGGAAGGACGCGCGCGCGATCCATCGATCACCTGTCATTTTTT
CACCATGCAACCCCTTCATCCCCGCGTACAAATGACTTCATGCCCATGCA
ATCGCCACTCGTGCGCCAAGTGGCATTTGATTTCGTGCCCTCCTTCCCGC
CCGTCGATCATTGGCAAGCAAAAAGGATCTGCAAGCATGAGAGAAAGAGG
GCTCAAGGCGTGCAGCCTCGATTCGGCTCCAAATTGGATAATTGCTACAT
GTCCTCTATTTCCAGGCTTTCAGAAAGGAATCCTTACCGCCATCAAGCCT
CGTCCATTCATGCTTGCCATACGTGACATCCCATGCAGCGTCATGCGAAG
CATCGACCGCGTGAAGGGGGGAGGTCATCGAATACGGATGCCGGAGTTCT
CCTGATGAGATCCTTGCTGGAGCGAATAAAACAATGTTATGTACATCGAG
CAAGCATGTTCACCCGGAATTTCGATGCGCATGCATCAGATACGACATCA
AAGTCCTCATGTGCACTTTTGATCAAGCAAAACAGCAGCACTTACGAAGC
GAATGTCTTTTTTTTTTAAAGTCACTACATACACGTCATATAGCAGCGCG
CTTCAATCACGCTTGCCTTCGCGCTTCTGTGATGAAAGTCTTCGTTTATG
TGTGCTTGAGGCATGGAATGGACATCTTGACAGTCATAGTCTTGACTCCA
GTTATAACTTCTGGCTTCGTGTTGTGACAGAACTTCTGTCATGCAATACG
CCATGGCACCGCCAGGATCGTCTCATACGCCTCCTCACTCCTCATTCGAT
TTTTCTCCCCTTAAATCCGAGTATAGATACGACAAAAAGCTCCCAAGATC
TATCTCTGCCGGAGAGCAAGCCCTTTTCGTGGCCCTTGGCGCCTGTCTGA
CCCACAGAGGGGCGCTCTCCACTCTACCTCCTTCAGAGGCCGTCCAGGAT
GCGCGGTCGAACCACCCCCCCACGCCCGGCGCCTCCACTGCTTTCCCCCC
TCCTCCTCTGCACATTTTTCTTCACACTCGTAGCCTCTTTCTCCATCCCT
CCGCATCGAATCGCCACACGCCCTTCGTTCGCCCCCCTGCCCCTTCCCCT
TCCCAAAAGCCCTCTGTGGGGCCCGAGCCCCTCCCTTCCCCCTCCCCTCC
CCTCCCCCTCTCCCCCCCCTTCGGCCTGCCCATCTACCCTCTTCGCAAAC
AGTCCTACCACAACCAATTACCCGTCCGAAGCCAAGTTCGGTGACCTTCC
CTACGCGCCTGGCCAGGTCAAGACGGGCACTTACCTGCGAGGGATGGACC
GTTACAAGTGGCGCACGTTACCGGACGTGTTCGAAACGGTCGCGTCCCTG
GCCCCCGAGGCGGTGGCGGTGGAGGACATGGTGCACACTCCGACGGCGAA
AATGACTTATGGAGAACTGAACCGGCAGATCGGAGCCTTGGCCGCCTTCT
TTCAGCACGAAGGCCTCAAGCCCGGGCAGTGCGTGAGTGTCTTCGCCGAG
AACAGCCATCGATGGCTGATCGCCGACCAGGCCATCCTAAAGGCGGGGGC
CTGCAACGCGGTCCGAGGCGTCAAGGCCCCCGTGGACGAGCTCCAGTACA
TCTACCAGAACAGTGAGAGCGTTGCCAGCGTGGTGGAGAGCGTGGAGCAA
ATCGAAGGTGAGGGAGGGCGAGAGGGCGGGAAGGAAGAGGAGCGGGGGAA
AATGGAGGTCATCTGTGTTGCGAAAGAGCGTGCTCGTCTCTCTCGTGTAC
TCGAGCTTCTCACCCTACAGGGACGTCTAACCCCCCTTTCCTTCCCTCCC
ACTTAGCCCTTATGCGAACCAACGGTGGCCTCACGGGCCGGTACGGCCCC
CCCCGCTTCATCCTCGTCCTCTTTCCCGGCGAAAGATCGGGCCAAGAGAT
CAGGGGTACGCAGGCTGGAGAGGG

Coding sequence (CDS) from alignment at CM002471.1:473172..475495-

>rna7391 ID=rna7391|Name=rna7391|organism=Nannochloropsis gaditana|type=CDS|length=1654bp|location=Sequence derived from alignment at CM002471.1:473172..475495- (Nannochloropsis gaditana)
CCCTTATGCGAACCAACGGTGGCCTCACGGGCCGGTACGGCCCCCCCCGC
TTCATCCTCGTCCTCTTTCCCGGCGAAAGATCGGGCCAAGAGATCAGGGG
TACGCAGGCTGGAGAGGGATGCGCGGTCGAACCACCCCCCCACGCCCGGC
GCCTCCACTGCTTTCCCCCCTCCTCCTCTGCACATTTTTCTTCACACTCG
TAGCCTCTTTCTCCATCCCTCCGCATCGAATCGCCACACGCCCTTCGTTC
GCCCCCCTGCCCCTTCCCCTTCCCAAAAGCCCTCTGTGGGGCCCGAGCCC
CTCCCTTCCCCCTCCCCTCCCCTCCCCCTCTCCCCCCCCTTCGGCCTGCC
CATCTACCCTCTTCGCAAACAGTCCTACCACAACCAATTACCCGTCCGAA
GCCAAGTTCGGTGACCTTCCCTACGCGCCTGGCCAGGTCAAGACGGGCAC
TTACCTGCGAGGGATGGACCGTTACAAGTGGCGCACGTTACCGGACGTGT
TCGAAACGGTCGCGTCCCTGGCCCCCGAGGCGGTGGCGGTGGAGGACATG
GTGCACACTCCGACGGCGAAAATGACTTATGGAGAACTGAACCGGCAGAT
CGGAGCCTTGGCCGCCTTCTTTCAGCACGAAGGCCTCAAGCCCGGGCAGT
GCGTGAGTGTCTTCGCCGAGAACAGCCATCGATGGCTGATCGCCGACCAG
GCCATCCTAAAGGCGGGGGCCTGCAACGCGGTCCGAGGCGTCAAGGCCCC
CGTGGACGAGCTCCAGTACATCTACCAGAACAGTGAGAGCGTTGCCAGCG
TGGTGGAGAGCGTGGAGCAAATCGAAGCCCTTATGCGAACCAACGGTGGC
CTCACGGGCCGGTACGGCCCCCCCCGCTTCATCCTCGTCCTCTTTCCCGG
CGAAAGATCGGGCCAAGAGATCAGGGGTACGCAGGCTGGAGAGGGATGCG
CGGTCGAACCACCCCCCCACGCCCGGCGCCTCCACTGCTTTCCCCCCTCC
TCCTCTGCACATTTTTCTTCACACTCGTAGCCTCTTTCTCCATCCCTCCG
CATCGAATCGCCACACGCCCTTCGTTCGCCCCCCTGCCCCTTCCCCTTCC
CAAAAGCCCTCTGTGGGGCCCGAGCCCCTCCCTTCCCCCTCCCCTCCCCT
CCCCCTCTCCCCCCCCTTCGGCCTGCCCATCTACCCTCTTCGCAAACAGT
CCTACCACAACCAATTACCCGTCCGAAGCCAAGTTCGGTGACCTTCCCTA
CGCGCCTGGCCAGGTCAAGACGGGCACTTACCTGCGAGGGATGGACCGTT
ACAAGTGGCGCACGTTACCGGACGTGTTCGAAACGGTCGCGTCCCTGGCC
CCCGAGGCGGTGGCGGTGGAGGACATGGTGCACACTCCGACGGCGAAAAT
GACTTATGGAGAACTGAACCGGCAGATCGGAGCCTTGGCCGCCTTCTTTC
AGCACGAAGGCCTCAAGCCCGGGCAGTGCGTGAGTGTCTTCGCCGAGAAC
AGCCATCGATGGCTGATCGCCGACCAGGCCATCCTAAAGGCGGGGGCCTG
CAACGCGGTCCGAGGCGTCAAGGCCCCCGTGGACGAGCTCCAGTACATCT
ACCAGAACAGTGAGAGCGTTGCCAGCGTGGTGGAGAGCGTGGAGCAAATC
GAAG

Synonyms

Publications