EWM23293.1, cds7374 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|585104298|gb|EWM23293.1| (long-chain acyl- synthetase, partial [Nannochloropsis gaditana]) HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query: 1 MRGRTTPPRPAPPLLSPLLLCTFFFTLVASFSIPPHRIATRPSFAPLPLPLPKSPLWGPSPSLPPPLPSPSPPPSACPSTLFANSPTTTNYPSEAKFGDLPYAPGQVKTGTYLRGMDRYKWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQAGEG 276
MRGRTTPPRPAPPLLSPLLLCTFFFTLVASFSIPPHRIATRPSFAPLPLPLPKSPLWGPSPSLPPPLPSPSPPPSACPSTLFANSPTTTNYPSEAKFGDLPYAPGQVKTGTYLRGMDRYKWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQAGEG
Sbjct: 1 MRGRTTPPRPAPPLLSPLLLCTFFFTLVASFSIPPHRIATRPSFAPLPLPLPKSPLWGPSPSLPPPLPSPSPPPSACPSTLFANSPTTTNYPSEAKFGDLPYAPGQVKTGTYLRGMDRYKWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQAGEG 276
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|298711624|emb|CBJ32681.1| (long chain acyl-CoA synthetase [Ectocarpus siliculosus]) HSP 1 Score: 139.043 bits (349), Expect = 1.323e-33 Identity = 73/163 (44.79%), Postives = 106/163 (65.03%), Query Frame = 0
Query: 121 WRTLPDVFETVASLAPEAVAVEDMVHTPT------------AKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNG-GLTGRYG-PPRFILVLFPGERSGQEIR 269
W +LP++++ +A + A+ D VH P ++TY E+ IG++AA GL+ CVSVF+ENS+RWLIA+Q I+KAG CNAVRG APV EL+YIY +SESV +VVE+ + ++ L+ G GL G G PRF++VLFPG ++G+E++
Sbjct: 49 WNSLPEMWDFLAGECGDLTAIVDPVHPPDMPDGKRPPKGSETRLTYSEMRTSIGSMAAALIGLGLEKQDCVSVFSENSYRWLIAEQGIMKAGGCNAVRGATAPVAELRYIYGDSESVGAVVETPKLLKLLVEEGGKGLEGADGAEPRFLMVLFPGGKNGKELQ 211
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|551655530|ref|XP_005830539.1| (hypothetical protein GUITHDRAFT_53017, partial [Guillardia theta CCMP2712] >gi|428174665|gb|EKX43559.1| hypothetical protein GUITHDRAFT_53017, partial [Guillardia theta CCMP2712]) HSP 1 Score: 119.013 bits (297), Expect = 1.880e-27 Identity = 61/150 (40.67%), Postives = 96/150 (64.00%), Query Frame = 0
Query: 127 VFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQAGEG 276
++E + L P+ VA+ D +H MTY + + I +A F Q G++ G +++F+ENS+RW + D AIL+AGA + VRG APVDEL++IY +S S A VVE+VE +E L++ G P F++V++P ++SG+ I+ +AG G
Sbjct: 1 LWEQMTRLFPDHVALSDPLHGFGDDMTYSQASAAITRMAGFLQELGVQKGDKIALFSENSYRWSLVDSAILQAGAVDVVRGATAPVDELKFIYSDSGSKACVVENVELLEKLVKQAK--LGTEVEPEFVVVMYPKDKSGETIK-REAGLG 147
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|971506990|dbj|GAQ91218.1| (Acyl-ACP Synthetase [Klebsormidium nitens]) HSP 1 Score: 110.923 bits (276), Expect = 7.817e-24 Identity = 60/140 (42.86%), Postives = 85/140 (60.71%), Query Frame = 0
Query: 120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLF 259
W LP ++ T+A + VA++D P KMTY EL + I + + G+K G V +F++NSHRW+IADQ I+ AGA +AVRG KAP +EL+YI ++SES A VVE+ E + L G L R +F +VL+
Sbjct: 133 NWEVLPAMWHTLAQKYGDRVALDDPHRKPHIKMTYKELEQAIVDFSEGLRLYGIKAGDRVGLFSDNSHRWIIADQGIMMAGAVDAVRGAKAPAEELKYILEHSESTAVVVETPEVLAKLAPVLGELADRI---KFAVVLW 269
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|544218567|ref|XP_005539427.1| (long-chain-fatty-acid CoA ligase [Cyanidioschyzon merolae strain 10D] >gi|449019989|dbj|BAM83391.1| long-chain-fatty-acid CoA ligase [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 107.071 bits (266), Expect = 1.751e-22 Identity = 82/247 (33.20%), Postives = 122/247 (49.39%), Query Frame = 0
Query: 34 PPHRIATRPSFA-PLPLP---LPKSPLWGPSPSLPPPLPSPSPPPSACPSTLFANSPTTTNYPSEAKFGDLPYAPGQVKTGTY--LRG---------MDRYKWRTLPDVFETVASLAPEAVAVEDMVHTPTAK---MTYGELNRQIGALAAFFQHEGL---KPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLF 259
P HR+A R + LP P P++ G + + P +P PS TL P ++ G LP + Y LR M + W ++P ++ET+A E A+ D H P + TY E++ +I LAA +H GL +PG V++F+ENS RWLI DQA++ GA +AVRG AP+DEL YI ++S++ VV++ +E L+R RFI+VL+
Sbjct: 38 PGHRLARRSAIERALPRPGVARPRARSKGAALEVQLRTPGRAPSPS---ETL---EPDSSVSERNRDAGALPALDETQRQAAYRKLRDPWFYPKGTLMRTFGWASVPSIWETLAEAYSEITALIDE-HNPYRQKISWTYAEVHEEIRELAAGLRHHGLTNLQPGDIVALFSENSARWLITDQALMWNGAASAVRGTAAPLDELAYILEHSDACGLVVDTPTVLEKLIRNEQATRCLAKQVRFIMVLW 277
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|674932246|emb|CDY01190.1| (BnaA04g06290D [Brassica napus]) HSP 1 Score: 106.686 bits (265), Expect = 2.274e-22 Identity = 58/153 (37.91%), Postives = 94/153 (61.44%), Query Frame = 0
Query: 120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQ 272
+W+ +PD++ + A + VA+ D H P K+TY +L ++I A + G+KP + +++FA+NS RWL++DQ I+ GA N VRG ++ V+EL IYQ+SESVA VV++ E + T T + RF+++L+ GE+S +G Q
Sbjct: 91 EWKAVPDIWRSSADKYGDKVALVDPYHDPPLKLTYNQLEQEILDFAEGLRAVGVKPDEKIALFADNSCRWLVSDQGIMSTGAVNVVRGSRSSVEELLQIYQHSESVALVVDNPEFFNRIADT---FTSK-ASLRFLILLW-GEKSSLVTQGMQ 238
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|729472614|ref|XP_010527443.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X2 [Tarenaya hassleriana]) HSP 1 Score: 106.301 bits (264), Expect = 2.998e-22 Identity = 59/154 (38.31%), Postives = 94/154 (61.04%), Query Frame = 0
Query: 120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQA 273
+WR +PD++ + A + VAV D H P K+TY +L ++I + A + G+KP +++FA+NS RWL+ADQ + GA N VRG ++ V+EL IY +SESVA VV++ E + T + R RF+++L+ GE+S + GT++
Sbjct: 80 EWRAIPDIWRSSAEKYGDRVAVIDPYHDPPTKLTYKQLEQEILSFAEGLRVVGVKPDDKIALFADNSCRWLVADQGTMATGAVNVVRGSRSSVEELLQIYNHSESVALVVDNPEFFNRISET---FSSR-ANLRFVILLW-GEKSSLFMEGTRS 228
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|1098761851|ref|XP_018844052.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X1 [Juglans regia]) HSP 1 Score: 106.301 bits (264), Expect = 3.174e-22 Identity = 56/154 (36.36%), Postives = 93/154 (60.39%), Query Frame = 0
Query: 120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQA 273
+W T+PD++ + A + VAV D H+P ++MTY +L +I + + G+ P + +++FA+NS RWL+ADQ I+ GA N VRG ++ V+EL +IY +SESVA V++S E + + T RF+++L+ GE+S +G +
Sbjct: 109 EWETVPDIWRSSADKYGDRVAVVDPYHSPPSQMTYKQLENEILNFSEGLRVIGVNPDEKLALFADNSCRWLVADQGIMATGAINVVRGSRSSVEELLHIYNHSESVALVLDSPEMFDQITET----FCSKAAMRFVILLW-GEKSSMACKGVEG 257
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|1098761853|ref|XP_018844053.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X2 [Juglans regia]) HSP 1 Score: 106.301 bits (264), Expect = 3.288e-22 Identity = 56/154 (36.36%), Postives = 93/154 (60.39%), Query Frame = 0
Query: 120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQA 273
+W T+PD++ + A + VAV D H+P ++MTY +L +I + + G+ P + +++FA+NS RWL+ADQ I+ GA N VRG ++ V+EL +IY +SESVA V++S E + + T RF+++L+ GE+S +G +
Sbjct: 104 EWETVPDIWRSSADKYGDRVAVVDPYHSPPSQMTYKQLENEILNFSEGLRVIGVNPDEKLALFADNSCRWLVADQGIMATGAINVVRGSRSSVEELLHIYNHSESVALVLDSPEMFDQITET----FCSKAAMRFVILLW-GEKSSMACKGVEG 252
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|729472607|ref|XP_010527441.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X1 [Tarenaya hassleriana]) HSP 1 Score: 106.301 bits (264), Expect = 3.364e-22 Identity = 59/154 (38.31%), Postives = 94/154 (61.04%), Query Frame = 0
Query: 120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQA 273
+WR +PD++ + A + VAV D H P K+TY +L ++I + A + G+KP +++FA+NS RWL+ADQ + GA N VRG ++ V+EL IY +SESVA VV++ E + T + R RF+++L+ GE+S + GT++
Sbjct: 82 EWRAIPDIWRSSAEKYGDRVAVIDPYHDPPTKLTYKQLEQEILSFAEGLRVVGVKPDDKIALFADNSCRWLVADQGTMATGAVNVVRGSRSSVEELLQIYNHSESVALVVDNPEFFNRISET---FSSR-ANLRFVILLW-GEKSSLFMEGTRS 230 The following BLAST results are available for this feature:
BLAST of EWM23293.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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