EWM23293.1, cds7374 (CDS) Nannochloropsis gaditana

Overview
NameEWM23293.1
Unique Namecds7374
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:473439..474147 -
Alignment locationCM002471.1:473172..473289 -

Link to JBrowse

Properties
Property NameValue
Start range473172
Start range.
Protein idEWM23293.1
Productlong-chain acyl- synthetase
Partialtrue
Orig transcript idgnl|cribi|Naga_100158g20.7789.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:473439..474147 -
CM002471.1supercontigCM002471.1:473172..473289 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR000873AMP-dep_Synth/Lig
Homology
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|585104298|gb|EWM23293.1| (long-chain acyl- synthetase, partial [Nannochloropsis gaditana])

HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MRGRTTPPRPAPPLLSPLLLCTFFFTLVASFSIPPHRIATRPSFAPLPLPLPKSPLWGPSPSLPPPLPSPSPPPSACPSTLFANSPTTTNYPSEAKFGDLPYAPGQVKTGTYLRGMDRYKWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQAGEG 276
            MRGRTTPPRPAPPLLSPLLLCTFFFTLVASFSIPPHRIATRPSFAPLPLPLPKSPLWGPSPSLPPPLPSPSPPPSACPSTLFANSPTTTNYPSEAKFGDLPYAPGQVKTGTYLRGMDRYKWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQAGEG
Sbjct:    1 MRGRTTPPRPAPPLLSPLLLCTFFFTLVASFSIPPHRIATRPSFAPLPLPLPKSPLWGPSPSLPPPLPSPSPPPSACPSTLFANSPTTTNYPSEAKFGDLPYAPGQVKTGTYLRGMDRYKWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQAGEG 276          
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|298711624|emb|CBJ32681.1| (long chain acyl-CoA synthetase [Ectocarpus siliculosus])

HSP 1 Score: 139.043 bits (349), Expect = 1.323e-33
Identity = 73/163 (44.79%), Postives = 106/163 (65.03%), Query Frame = 0
Query:  121 WRTLPDVFETVASLAPEAVAVEDMVHTPT------------AKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNG-GLTGRYG-PPRFILVLFPGERSGQEIR 269
            W +LP++++ +A    +  A+ D VH P              ++TY E+   IG++AA     GL+   CVSVF+ENS+RWLIA+Q I+KAG CNAVRG  APV EL+YIY +SESV +VVE+ + ++ L+   G GL G  G  PRF++VLFPG ++G+E++
Sbjct:   49 WNSLPEMWDFLAGECGDLTAIVDPVHPPDMPDGKRPPKGSETRLTYSEMRTSIGSMAAALIGLGLEKQDCVSVFSENSYRWLIAEQGIMKAGGCNAVRGATAPVAELRYIYGDSESVGAVVETPKLLKLLVEEGGKGLEGADGAEPRFLMVLFPGGKNGKELQ 211          
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|551655530|ref|XP_005830539.1| (hypothetical protein GUITHDRAFT_53017, partial [Guillardia theta CCMP2712] >gi|428174665|gb|EKX43559.1| hypothetical protein GUITHDRAFT_53017, partial [Guillardia theta CCMP2712])

HSP 1 Score: 119.013 bits (297), Expect = 1.880e-27
Identity = 61/150 (40.67%), Postives = 96/150 (64.00%), Query Frame = 0
Query:  127 VFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQAGEG 276
            ++E +  L P+ VA+ D +H     MTY + +  I  +A F Q  G++ G  +++F+ENS+RW + D AIL+AGA + VRG  APVDEL++IY +S S A VVE+VE +E L++      G    P F++V++P ++SG+ I+  +AG G
Sbjct:    1 LWEQMTRLFPDHVALSDPLHGFGDDMTYSQASAAITRMAGFLQELGVQKGDKIALFSENSYRWSLVDSAILQAGAVDVVRGATAPVDELKFIYSDSGSKACVVENVELLEKLVKQAK--LGTEVEPEFVVVMYPKDKSGETIK-REAGLG 147          
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|971506990|dbj|GAQ91218.1| (Acyl-ACP Synthetase [Klebsormidium nitens])

HSP 1 Score: 110.923 bits (276), Expect = 7.817e-24
Identity = 60/140 (42.86%), Postives = 85/140 (60.71%), Query Frame = 0
Query:  120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLF 259
             W  LP ++ T+A    + VA++D    P  KMTY EL + I   +   +  G+K G  V +F++NSHRW+IADQ I+ AGA +AVRG KAP +EL+YI ++SES A VVE+ E +  L    G L  R    +F +VL+
Sbjct:  133 NWEVLPAMWHTLAQKYGDRVALDDPHRKPHIKMTYKELEQAIVDFSEGLRLYGIKAGDRVGLFSDNSHRWIIADQGIMMAGAVDAVRGAKAPAEELKYILEHSESTAVVVETPEVLAKLAPVLGELADRI---KFAVVLW 269          
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|544218567|ref|XP_005539427.1| (long-chain-fatty-acid CoA ligase [Cyanidioschyzon merolae strain 10D] >gi|449019989|dbj|BAM83391.1| long-chain-fatty-acid CoA ligase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 107.071 bits (266), Expect = 1.751e-22
Identity = 82/247 (33.20%), Postives = 122/247 (49.39%), Query Frame = 0
Query:   34 PPHRIATRPSFA-PLPLP---LPKSPLWGPSPSLPPPLPSPSPPPSACPSTLFANSPTTTNYPSEAKFGDLPYAPGQVKTGTY--LRG---------MDRYKWRTLPDVFETVASLAPEAVAVEDMVHTPTAK---MTYGELNRQIGALAAFFQHEGL---KPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLF 259
            P HR+A R +    LP P    P++   G +  +    P  +P PS    TL    P ++        G LP      +   Y  LR          M  + W ++P ++ET+A    E  A+ D  H P  +    TY E++ +I  LAA  +H GL   +PG  V++F+ENS RWLI DQA++  GA +AVRG  AP+DEL YI ++S++   VV++   +E L+R            RFI+VL+
Sbjct:   38 PGHRLARRSAIERALPRPGVARPRARSKGAALEVQLRTPGRAPSPS---ETL---EPDSSVSERNRDAGALPALDETQRQAAYRKLRDPWFYPKGTLMRTFGWASVPSIWETLAEAYSEITALIDE-HNPYRQKISWTYAEVHEEIRELAAGLRHHGLTNLQPGDIVALFSENSARWLITDQALMWNGAASAVRGTAAPLDELAYILEHSDACGLVVDTPTVLEKLIRNEQATRCLAKQVRFIMVLW 277          
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|674932246|emb|CDY01190.1| (BnaA04g06290D [Brassica napus])

HSP 1 Score: 106.686 bits (265), Expect = 2.274e-22
Identity = 58/153 (37.91%), Postives = 94/153 (61.44%), Query Frame = 0
Query:  120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQ 272
            +W+ +PD++ + A    + VA+ D  H P  K+TY +L ++I   A   +  G+KP + +++FA+NS RWL++DQ I+  GA N VRG ++ V+EL  IYQ+SESVA VV++ E    +  T    T +    RF+++L+ GE+S    +G Q
Sbjct:   91 EWKAVPDIWRSSADKYGDKVALVDPYHDPPLKLTYNQLEQEILDFAEGLRAVGVKPDEKIALFADNSCRWLVSDQGIMSTGAVNVVRGSRSSVEELLQIYQHSESVALVVDNPEFFNRIADT---FTSK-ASLRFLILLW-GEKSSLVTQGMQ 238          
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|729472614|ref|XP_010527443.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 106.301 bits (264), Expect = 2.998e-22
Identity = 59/154 (38.31%), Postives = 94/154 (61.04%), Query Frame = 0
Query:  120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQA 273
            +WR +PD++ + A    + VAV D  H P  K+TY +L ++I + A   +  G+KP   +++FA+NS RWL+ADQ  +  GA N VRG ++ V+EL  IY +SESVA VV++ E    +  T    + R    RF+++L+ GE+S   + GT++
Sbjct:   80 EWRAIPDIWRSSAEKYGDRVAVIDPYHDPPTKLTYKQLEQEILSFAEGLRVVGVKPDDKIALFADNSCRWLVADQGTMATGAVNVVRGSRSSVEELLQIYNHSESVALVVDNPEFFNRISET---FSSR-ANLRFVILLW-GEKSSLFMEGTRS 228          
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|1098761851|ref|XP_018844052.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X1 [Juglans regia])

HSP 1 Score: 106.301 bits (264), Expect = 3.174e-22
Identity = 56/154 (36.36%), Postives = 93/154 (60.39%), Query Frame = 0
Query:  120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQA 273
            +W T+PD++ + A    + VAV D  H+P ++MTY +L  +I   +   +  G+ P + +++FA+NS RWL+ADQ I+  GA N VRG ++ V+EL +IY +SESVA V++S E  + +  T           RF+++L+ GE+S    +G + 
Sbjct:  109 EWETVPDIWRSSADKYGDRVAVVDPYHSPPSQMTYKQLENEILNFSEGLRVIGVNPDEKLALFADNSCRWLVADQGIMATGAINVVRGSRSSVEELLHIYNHSESVALVLDSPEMFDQITET----FCSKAAMRFVILLW-GEKSSMACKGVEG 257          
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|1098761853|ref|XP_018844053.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X2 [Juglans regia])

HSP 1 Score: 106.301 bits (264), Expect = 3.288e-22
Identity = 56/154 (36.36%), Postives = 93/154 (60.39%), Query Frame = 0
Query:  120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQA 273
            +W T+PD++ + A    + VAV D  H+P ++MTY +L  +I   +   +  G+ P + +++FA+NS RWL+ADQ I+  GA N VRG ++ V+EL +IY +SESVA V++S E  + +  T           RF+++L+ GE+S    +G + 
Sbjct:  104 EWETVPDIWRSSADKYGDRVAVVDPYHSPPSQMTYKQLENEILNFSEGLRVIGVNPDEKLALFADNSCRWLVADQGIMATGAINVVRGSRSSVEELLHIYNHSESVALVLDSPEMFDQITET----FCSKAAMRFVILLW-GEKSSMACKGVEG 252          
BLAST of EWM23293.1 vs. NCBI_GenBank
Match: gi|729472607|ref|XP_010527441.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 106.301 bits (264), Expect = 3.364e-22
Identity = 59/154 (38.31%), Postives = 94/154 (61.04%), Query Frame = 0
Query:  120 KWRTLPDVFETVASLAPEAVAVEDMVHTPTAKMTYGELNRQIGALAAFFQHEGLKPGQCVSVFAENSHRWLIADQAILKAGACNAVRGVKAPVDELQYIYQNSESVASVVESVEQIEALMRTNGGLTGRYGPPRFILVLFPGERSGQEIRGTQA 273
            +WR +PD++ + A    + VAV D  H P  K+TY +L ++I + A   +  G+KP   +++FA+NS RWL+ADQ  +  GA N VRG ++ V+EL  IY +SESVA VV++ E    +  T    + R    RF+++L+ GE+S   + GT++
Sbjct:   82 EWRAIPDIWRSSAEKYGDRVAVIDPYHDPPTKLTYKQLEQEILSFAEGLRVVGVKPDDKIALFADNSCRWLVADQGTMATGAVNVVRGSRSSVEELLQIYNHSESVALVVDNPEFFNRISET---FSSR-ANLRFVILLW-GEKSSLFMEGTRS 230          
The following BLAST results are available for this feature:
BLAST of EWM23293.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104298|gb|EWM23293.1|0.000e+0100.00long-chain acyl- synthetase, partial [Nannochlorop... [more]
gi|298711624|emb|CBJ32681.1|1.323e-3344.79long chain acyl-CoA synthetase [Ectocarpus silicul... [more]
gi|551655530|ref|XP_005830539.1|1.880e-2740.67hypothetical protein GUITHDRAFT_53017, partial [Gu... [more]
gi|971506990|dbj|GAQ91218.1|7.817e-2442.86Acyl-ACP Synthetase [Klebsormidium nitens][more]
gi|544218567|ref|XP_005539427.1|1.751e-2233.20long-chain-fatty-acid CoA ligase [Cyanidioschyzon ... [more]
gi|674932246|emb|CDY01190.1|2.274e-2237.91BnaA04g06290D [Brassica napus][more]
gi|729472614|ref|XP_010527443.1|2.998e-2238.31PREDICTED: probable acyl-activating enzyme 16, chl... [more]
gi|1098761851|ref|XP_018844052.1|3.174e-2236.36PREDICTED: probable acyl-activating enzyme 16, chl... [more]
gi|1098761853|ref|XP_018844053.1|3.288e-2236.36PREDICTED: probable acyl-activating enzyme 16, chl... [more]
gi|729472607|ref|XP_010527441.1|3.364e-2238.31PREDICTED: probable acyl-activating enzyme 16, chl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7391rna7391Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications