rna7381, rna7381 (mRNA) Nannochloropsis gaditana

Overview
Namerna7381
Unique Namerna7381
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1299
Alignment locationCM002471.1:455709..456167 +

Link to JBrowse

Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100053g34.5064.mrna
Orig protein idgnl|cribi|Naga_100053g34.5064
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:455709..456167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100053g34gene7141Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7381rna7381-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23324.1cds7364Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7381 ID=rna7381|Name=rna7381|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp
ATGTCACGACATTCGCACAGCTACATTCGCCTGCCTTTCATAAGCAATAT
TTCTTCAAACTCCGACGAGATAGAATTTCTCAAAAAGAACTACAGTTTTT
ATGCCCAAGTGTCCCAACGCCATGTCATCCACGACGTGGCTATCCAGTGT
GGCGTAGACTCCATCGAATTCATTTCTGTACGCAATTTGAGTATACGAGT
AGTGGCTCCCTCTCAAGTGGCCAATAATCAAGCAATTTTAGCCATTTCTG
CTTTGCTGCGTCAAGACCGTTCGAGCGGGATACAACCAAATTTCCTCAGC
AAATCGACTTCAGGATACCGGAATCCGCAGGCTGATGTCAGACACGTCGA
AATGATGGTCGGAGATACTTTCTCCGCTCCACAGCATCTTTCTAATGACC
AAGCCATCCACTTCGCAGGAAGTGTTGGGACAGAACTGGCTTTGGTGGGG
AATAATTTGCCTTCCATTCTCCCCTCTCAATCAGAGCTCTTGAACAATAC
AGCACCCATACCGCAGATCCCCCTGCAAGTGTCTCCTTGGGGGAAAGCGT
TCCCGAACTTTCAATGTCCAAGCATGCCACCCAGCTCTCCGTCTGAAAGC
ATGCAGAGCCTTGCCCAGTGGCCCTCCTTCCTGGACAAAGCTCCGCCGTC
GATTCCCTCCACACTTTCAAGCCCCTGTGCGAGCCCGTGGCAAGCGGCCT
CTCCGAGCCTTTGCCGACCGAATCTCTCCCTGACATGCCTGCAAGAATGC
GCCTGGCTGCTCCAACAGCGGTTTGGTCTCACGCTCAGATTCCCCGATAG
CCCTGGTCGGTGCTTCTTGGAAGAAATCAGCCTGGCAGTGTACGGCACAC
CGAGCCTCAGTGCGCAGGTGCGTGCCACAATGGATCGATGCATCTCGACA
CATGGAGGACTGCTGTATCAAGCACCGCCCGGAGGCCTAGGGCTTCATGC
GGGGGTCCATGCGGGCGCTATCGCGGCGGGGCAGAACGCAGGCCCGCCTC
TCAGCGGCAGAGGCCCCACCGTGGAATCCCTAGAGATGGCCGCTGTCGCC
CATGGCTACAGCATCGTCATCACAATTTACGATGCTGTCGAGCAAACACG
CGTCTCCTTCCGCCCCTTCCCGAGCATGGAGGCTCTTACGCCCCCCCCCG
AGGCCTCCCTGCTCGCCGTGGGAGGCCGGTACTGGCAGCTCGAGGACCTG
GCGCCGCCAGCGACAGACATGGAGACGGTCACGCCTTCCGAGCTAAATGA
CCTATCCCTATCAATGCAGTCGATTAGCGGGCGGATGTCGGTTTGGTAG
back to top

protein sequence of rna7381

>rna7381-protein ID=rna7381-protein|Name=rna7381|organism=Nannochloropsis gaditana|type=polypeptide|length=152bp
MGLITMPVNMLLIICWCLALLFSTRTAEASRRPVCTLTPFICPAPGLYRQ
HNGRRRTLNLYWGVFGGSSSKKINPGKGSGEDPAKVRARIASCRVCNKKG
AVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRG
ER
back to top

mRNA from alignment at CM002471.1:455709..456167+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7381 ID=rna7381|Name=rna7381|organism=Nannochloropsis gaditana|type=mRNA|length=459bp|location=Sequence derived from alignment at CM002471.1:455709..456167+ (Nannochloropsis gaditana)
ATGGGACTTATTACGATGCCTGTAAACATGCTGTTGATAATCTGTTGGTG
TCTCGCTCTATTATTCTCCACAAGAACCGCTGAAGCAAGTAGGCGACCCG
TATGTACTCTGACACCTTTCATATGCCCTGCTCCCGGTCTCTACCGGCAA
CACAATGGTCGTCGGAGAACACTCAATCTGTATTGGGGAGTTTTCGGCGG
TAGTTCCTCCAAAAAGATTAATCCTGGGAAAGGCAGCGGAGAGGATCCTG
CGAAAGTGAGGGCTCGCATTGCCTCTTGCAGAGTCTGTAATAAGAAAGGA
GCAGTGAATTGTCCGGTCTGTGCCGGAACCGGTATCGACCAAAAAAATGG
CGCCATCTTTGAGCGCTACAAATGCTTGAAATGCCAGGGGTTTGGGTATG
TGAGTTGTGAGGCCTGCAATCCCGGTGGCTTGACGCCCGAacagcgagga
gaaaggtga
back to top

Coding sequence (CDS) from alignment at CM002471.1:455709..456167+

>rna7381 ID=rna7381|Name=rna7381|organism=Nannochloropsis gaditana|type=CDS|length=459bp|location=Sequence derived from alignment at CM002471.1:455709..456167+ (Nannochloropsis gaditana)
ATGGGACTTATTACGATGCCTGTAAACATGCTGTTGATAATCTGTTGGTG
TCTCGCTCTATTATTCTCCACAAGAACCGCTGAAGCAAGTAGGCGACCCG
TATGTACTCTGACACCTTTCATATGCCCTGCTCCCGGTCTCTACCGGCAA
CACAATGGTCGTCGGAGAACACTCAATCTGTATTGGGGAGTTTTCGGCGG
TAGTTCCTCCAAAAAGATTAATCCTGGGAAAGGCAGCGGAGAGGATCCTG
CGAAAGTGAGGGCTCGCATTGCCTCTTGCAGAGTCTGTAATAAGAAAGGA
GCAGTGAATTGTCCGGTCTGTGCCGGAACCGGTATCGACCAAAAAAATGG
CGCCATCTTTGAGCGCTACAAATGCTTGAAATGCCAGGGGTTTGGGTATG
TGAGTTGTGAGGCCTGCAATCCCGGTGGCTTGACGCCCGAacagcgagga
gaaaggtga
back to top
Synonyms
Publications