EWM23324.1, cds7364 (CDS) Nannochloropsis gaditana

Overview
NameEWM23324.1
Unique Namecds7364
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:455709..456167 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23324.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100053g34.5064.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:455709..456167 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0051082unfolded protein binding
GO:0031072heat shock protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001305HSP_DnaJ_Cys-rich_dom
Homology
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|585104331|gb|EWM23324.1| (uncharacterized protein Naga_100053g34 [Nannochloropsis gaditana])

HSP 1 Score: 311.612 bits (797), Expect = 1.463e-107
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query:    1 MGLITMPVNMLLIICWCLALLFSTRTAEASRRPVCTLTPFICPAPGLYRQHNGRRRTLNLYWGVFGGSSSKKINPGKGSGEDPAKVRARIASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            MGLITMPVNMLLIICWCLALLFSTRTAEASRRPVCTLTPFICPAPGLYRQHNGRRRTLNLYWGVFGGSSSKKINPGKGSGEDPAKVRARIASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER
Sbjct:    1 MGLITMPVNMLLIICWCLALLFSTRTAEASRRPVCTLTPFICPAPGLYRQHNGRRRTLNLYWGVFGGSSSKKINPGKGSGEDPAKVRARIASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152          
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|1130672530|ref|XP_019708373.1| (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Elaeis guineensis])

HSP 1 Score: 92.0485 bits (227), Expect = 1.750e-21
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   86 VRARIASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            ++A   SCR C  KGA+ CP C GTG ++KNG IFER+KC  CQGFG  SC +C  GGLTPEQRGER
Sbjct:   39 IKAVFNSCRTCQGKGAIECPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPSCGKGGLTPEQRGER 105          
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|672126111|ref|XP_008786495.1| (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Phoenix dactylifera])

HSP 1 Score: 91.2781 bits (225), Expect = 4.355e-21
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   86 VRARIASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            ++A   SCR C  KGAV CP C GTG ++KNG IFER+KC +CQGFG  SC  C  GGLTPEQRGER
Sbjct:   39 IKAVFNSCRTCRGKGAVECPGCKGTGKNKKNGNIFERWKCFECQGFGMKSCPNCGKGGLTPEQRGER 105          
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|514744163|ref|XP_004960564.1| (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Setaria italica])

HSP 1 Score: 90.5077 bits (223), Expect = 1.030e-20
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 0
Query:   83 PAKVRARI----ASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            P+K  AR+    A C+ C  KGAV CP C GTG ++KNG IFER+KC +CQGFG  SC +C  GGLTPEQRGER
Sbjct:   44 PSKRGARLMVSAAGCKTCKGKGAVECPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPSCGKGGLTPEQRGER 117          
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|567148773|ref|XP_006416179.1| (hypothetical protein EUTSA_v10009125mg [Eutrema salsugineum] >gi|557093950|gb|ESQ34532.1| hypothetical protein EUTSA_v10009125mg [Eutrema salsugineum])

HSP 1 Score: 89.7373 bits (221), Expect = 2.884e-20
Identity = 46/89 (51.69%), Postives = 55/89 (61.80%), Query Frame = 0
Query:   64 VFGGSSSKKINPGKGSGEDPAKVRARIASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            V G S S K++  K        +     SC  C  KGA++CP C GTG ++KNG IFER+KC +CQGFG  SC  C  GGLTPEQRGER
Sbjct:   36 VLGRSDSIKVSAAKSGNFSLGSI---FKSCETCGAKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGMKSCPKCGKGGLTPEQRGER 121          
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|226506660|ref|NP_001144962.1| (uncharacterized protein LOC100278105 [Zea mays] >gi|195649213|gb|ACG44074.1| hypothetical protein [Zea mays] >gi|1142837591|gb|AQK95677.1| hypothetical protein ZEAMMB73_Zm00001d011093 [Zea mays])

HSP 1 Score: 89.3521 bits (220), Expect = 3.214e-20
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 0
Query:   91 ASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            A+C+ C  KGAV CP C GTG ++KNG IFER+KC  CQGFG  SC  C  GGLTPEQRGER
Sbjct:   58 AACKTCKGKGAVECPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPTCGKGGLTPEQRGER 119          
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|1040820100|ref|XP_017242129.1| (PREDICTED: uncharacterized protein LOC108214569 isoform X1 [Daucus carota subsp. sativus] >gi|1021051025|gb|KZN08803.1| hypothetical protein DCAR_001459 [Daucus carota subsp. sativus])

HSP 1 Score: 89.3521 bits (220), Expect = 3.504e-20
Identity = 54/141 (38.30%), Postives = 71/141 (50.35%), Query Frame = 0
Query:   12 LIICWCLALLFSTRTAEASRRPVCTLTPFICPAPGLYRQHNGRRRTLNLYWGVFGGSSSKKINPGKGSGEDPAKVRARIASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            L +CW   + F       S+  +  +    C   GL  Q  GR+R++ +     GG +S  I+ G                C  C  KG + CP C GTG ++KNG IFER+KC +CQGFG   C +C  GGLTPEQRGER
Sbjct:    4 LCVCWSSMVPFPAPPDHDSKHHLLNIMTTSC---GLDEQGAGRKRSVTVSAAKSGGFAS--ISKG----------------CSTCKGKGGIECPGCKGTGRNKKNGNIFERWKCYECQGFGLKGCPSCGKGGLTPEQRGER 123          
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|242086547|ref|XP_002439106.1| (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X2 [Sorghum bicolor] >gi|241944391|gb|EES17536.1| hypothetical protein SORBI_3009G004500 [Sorghum bicolor])

HSP 1 Score: 89.3521 bits (220), Expect = 4.351e-20
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 0
Query:   93 CRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            C+ C  KGAV CP C GTG ++KNG IFER+KC  CQGFG +SC  C  GGLTPEQRGER
Sbjct:   64 CKTCKGKGAVECPGCKGTGKNKKNGNIFERWKCFDCQGFGLMSCPTCGKGGLTPEQRGER 123          
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|565493326|ref|XP_006304302.1| (hypothetical protein CARUB_v10010657mg [Capsella rubella] >gi|482573013|gb|EOA37200.1| hypothetical protein CARUB_v10010657mg [Capsella rubella])

HSP 1 Score: 88.1965 bits (217), Expect = 1.243e-19
Identity = 54/135 (40.00%), Postives = 69/135 (51.11%), Query Frame = 0
Query:   18 LALLFSTRTAEASRRPVCTLTPFICPAPGLYRQHNGRRRTLNLYWGVFGGSSSKKINPGKGSGEDPAKVRARIASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            + LL S+ + E  + P+C      C    L  +     R +     V G   S K++ GK        +     SC  C  KGA+ CP C GTG ++KNG +FER+KC  CQGFG  SC  C  GGLTPEQRGER
Sbjct:    3 MLLLISSYSFEMLKAPLC------CSELSLEHKILAFERQI-----VSGRRDSIKVSAGKIGNFSFGSI---FKSCETCGAKGAIECPGCKGTGKNKKNGNMFERWKCFDCQGFGMKSCPKCGKGGLTPEQRGER 123          
BLAST of EWM23324.1 vs. NCBI_GenBank
Match: gi|1002856145|ref|XP_015692939.1| (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X2 [Oryza brachyantha])

HSP 1 Score: 87.4261 bits (215), Expect = 1.369e-19
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 0
Query:   84 AKVRARIASCRVCNKKGAVNCPVCAGTGIDQKNGAIFERYKCLKCQGFGYVSCEACNPGGLTPEQRGER 152
            AKV+   A C+ C  KGA+ CP C GTG ++KNG IFER+KC  CQGFG  SC +C  GGLTPEQRGER
Sbjct:   34 AKVKVS-AGCKTCRGKGAIECPGCKGTGRNKKNGNIFERWKCFDCQGFGLKSCPSCGKGGLTPEQRGER 101          
The following BLAST results are available for this feature:
BLAST of EWM23324.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104331|gb|EWM23324.1|1.463e-107100.00uncharacterized protein Naga_100053g34 [Nannochlor... [more]
gi|1130672530|ref|XP_019708373.1|1.750e-2162.69PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3... [more]
gi|672126111|ref|XP_008786495.1|4.355e-2164.18PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3... [more]
gi|514744163|ref|XP_004960564.1|1.030e-2060.81PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3... [more]
gi|567148773|ref|XP_006416179.1|2.884e-2051.69hypothetical protein EUTSA_v10009125mg [Eutrema sa... [more]
gi|226506660|ref|NP_001144962.1|3.214e-2066.13uncharacterized protein LOC100278105 [Zea mays] >g... [more]
gi|1040820100|ref|XP_017242129.1|3.504e-2038.30PREDICTED: uncharacterized protein LOC108214569 is... [more]
gi|242086547|ref|XP_002439106.1|4.351e-2066.67protein EMBRYO SAC DEVELOPMENT ARREST 3, chloropla... [more]
gi|565493326|ref|XP_006304302.1|1.243e-1940.00hypothetical protein CARUB_v10010657mg [Capsella r... [more]
gi|1002856145|ref|XP_015692939.1|1.369e-1962.32PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7381rna7381Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications