EWM23313.1, cds7346 (CDS) Nannochloropsis gaditana

Overview
NameEWM23313.1
Unique Namecds7346
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:420092..420757 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23313.1
ProductChalcone isomerase, subgroup
Orig transcript idgnl|cribi|Naga_100053g18.5053.mrna
GeneCHI
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:420092..420757 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0009813flavonoid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016872intramolecular lyase activity
GO:0045430chalcone isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR016087Chalcone_isomerase
IPR016088Chalcone_isomerase_3-sand
Homology
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|585104320|gb|EWM23313.1| (Chalcone isomerase, subgroup [Nannochloropsis gaditana])

HSP 1 Score: 433.335 bits (1113), Expect = 2.088e-153
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MGRLSLACCVSALLALTTYAMIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGLLTWINLVK 221
            MGRLSLACCVSALLALTTYAMIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGLLTWINLVK
Sbjct:    1 MGRLSLACCVSALLALTTYAMIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGLLTWINLVK 221          
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|553194490|ref|XP_005855968.1| (hypothetical protein NGA_0361402 [Nannochloropsis gaditana CCMP526] >gi|422293076|gb|EKU20377.1| hypothetical protein NGA_0361402 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 391.734 bits (1005), Expect = 2.813e-137
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:   21 MIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGLLTWINLVK 221
            MIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGLLTWINLVK
Sbjct:    1 MIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGLLTWINLVK 201          
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|298707876|emb|CBJ30273.1| (Chalcone Isomerase [Ectocarpus siliculosus])

HSP 1 Score: 154.066 bits (388), Expect = 3.500e-43
Identity = 96/198 (48.48%), Postives = 125/198 (63.13%), Query Frame = 0
Query:   21 MIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGS----KALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGL-KGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGL 213
            + E ATKI F E +SLPG  +G SL G GVRVKK +GP  VKVY VGLYVD+  A ++L   KG    S       F  +   NF+K ++LKMAR+VG   +V+ALAESVKPR+  GS+  L  FQD+LL  + K G A+ G QFGF  + G+ L V++NGK  G I SGPL+ A++  YL   AVS   K++ A G+
Sbjct:   33 VTERATKISFREKVSLPGG-SGSSLMGTGVRVKK-IGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGESLGKNDGFFTRVAKSNFEKTMVLKMAREVGTEKMVSALAESVKPRI-SGSKKPLDSFQDILLKAVGKEGAAKKGMQFGFVCKPGA-LCVSVNGKDAGTIKSGPLSSAMVDVYLGKKAVSPGAKKAFATGV 226          
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|926790903|ref|XP_013903925.1| (hypothetical protein MNEG_3049 [Monoraphidium neglectum] >gi|761974872|gb|KIZ04906.1| hypothetical protein MNEG_3049 [Monoraphidium neglectum])

HSP 1 Score: 97.8265 bits (242), Expect = 5.110e-21
Identity = 69/198 (34.85%), Postives = 107/198 (54.04%), Query Frame = 0
Query:   22 IEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGS----KALFDALETG-NFDKIVLLKMAR-KVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGL 213
            +EPAT I + + + +        LAGVGVR K+++G   + VY +GLYVD   A + L K+KG  + +    +A FDA+ T  +F++ + L ++   +  A  VNAL E + P L K  ++ +++  + L     G   + G    F   G  KL+  I+G++ G I S  L +AL   YL ++AVS D K S AQGL
Sbjct:   73 VEPATGIDYPDNLCVITKNHCPGLAGVGVRAKRVLGLKNINVYALGLYVDAHGAKKALGKWKGSSSDTLLTNQAAFDAITTAESFERSLRLVISFGSLKRAQFVNALEERLAPPLNKAGKSDVMKSFERLF---DGASFKKGTAIDFSASGKGKLVTKIDGQQVGTIESPELVKALFDIYLGSDAVSADAKASFAQGL 267          
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|1026073504|ref|XP_016581062.1| (PREDICTED: fatty-acid-binding protein 3, chloroplastic isoform X2 [Capsicum annuum])

HSP 1 Score: 93.5893 bits (231), Expect = 1.677e-19
Identity = 65/203 (32.02%), Postives = 105/203 (51.72%), Query Frame = 0
Query:   23 EPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGS----KALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGS---EAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTIN-----GKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGL 213
            EPATK+KF+ ++SLPGS   LSL G G R +K+   + +KVY  GLYV+  V  R L  ++G  A       +LF+ +   N +K +L+ + R +   T  +AL E++ PR+   +   ++AL  F+DV     +G   +            +K++V+++           I S  +A AL   +L  + VS  +K SVA+GL
Sbjct:   73 EPATKVKFQRSLSLPGSSTSLSLLGTGYR-EKVFAIIGIKVYAAGLYVNDSVFSR-LDAWRGRSAAEIQQVPSLFNNIFEANLEKSLLIVLVRDIDGKTFWDALDEAISPRIKSPTADDKSALSTFRDV----FQGKPLKKETSIFLTWIDPTKMLVSLSFDGMPSSVDATIESTNVASALFDVFLGGDPVSPTLKASVAKGL 269          
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|1000947943|ref|XP_015580422.1| (PREDICTED: fatty-acid-binding protein 3, chloroplastic [Ricinus communis])

HSP 1 Score: 92.4337 bits (228), Expect = 4.577e-19
Identity = 66/207 (31.88%), Postives = 106/207 (51.21%), Query Frame = 0
Query:   21 MIEPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKA----GSKALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGS---EAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGK-----KQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGLLT 215
            M EPAT +KF+ +ISLPG  + LSL G G R +K+   + VKVY  GLYV++ + +  L+ +KG  A    G+ ALF ++   + +K +L+ + R V   T  +AL +++ PR+   +   E+AL  F+ +     +G   + G          SK+++ I+           I S  +  AL   +  +  VS  +K SVA GL T
Sbjct:   74 MEEPATAVKFQTSISLPGCSSSLSLLGTGYR-EKVFAIIGVKVYAAGLYVNQSI-LSALNAWKGQSATEIQGNPALFSSIFQASSEKSLLIVLVRDVDGKTFWDALDDAISPRIEAPTPVDESALSTFRSI----FQGRPLKKGTFIFLTWLDPSKMLICISSDGMQATVDATIESTNVTFALFDVFFSDAPVSPSLKASVANGLAT 274          
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|1044575328|ref|XP_017424354.1| (PREDICTED: fatty-acid-binding protein 3, chloroplastic [Vigna angularis] >gi|920699444|gb|KOM42669.1| hypothetical protein LR48_Vigan05g027300 [Vigna angularis] >gi|965606032|dbj|BAT93208.1| hypothetical protein VIGAN_07213500 [Vigna angularis var. angularis])

HSP 1 Score: 90.8929 bits (224), Expect = 1.814e-18
Identity = 65/203 (32.02%), Postives = 105/203 (51.72%), Query Frame = 0
Query:   23 EPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHK----AGSKALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGS---EAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTI--NGKK---QGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGL 213
            EPATK+KF+  ++ PG    L+L G G R +K+   + VKVY  GLY+D+ +   +L+ +KG       G+ +LF  +   +F+K + + + R V   T  +AL++++ PR+   +   E AL  F+ V L        + G          +KL+V++  NG        I S  +A AL   +L +N VS  +K SVA+GL
Sbjct:   80 EPATKVKFQTCLNFPGCSNSLTLFGAGYR-EKVFAIIGVKVYAAGLYLDQSI-TPELNAWKGLSKDAIQGNSSLFQTIFQSSFEKSLQIILVRDVDGQTFWDALSDAIAPRIPASTSVDETALTTFRGVFL----DRPLKKGTFILLTWLNPTKLLVSVSPNGFPSTVDATIESANVASALFNVFLGDNPVSHSLKSSVAEGL 276          
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|1111119396|ref|XP_019249623.1| (PREDICTED: fatty-acid-binding protein 3, chloroplastic [Nicotiana attenuata] >gi|1102143958|gb|OIT00311.1| fatty-acid-binding protein 3, chloroplastic [Nicotiana attenuata])

HSP 1 Score: 90.1225 bits (222), Expect = 4.336e-18
Identity = 64/203 (31.53%), Postives = 103/203 (50.74%), Query Frame = 0
Query:   23 EPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGS----KALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGS---EAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTIN-----GKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGL 213
            EPATK+KF+ ++SLPG    LSL G G R +K+   + VKVY  GLYV+  V  R L  ++GH A +     +LF+ +   N +K + + + R +   T  +AL E++ PR+   +   ++AL  F+ V     +G   +            +K++V+++           I S  +A AL   +L  + VS  +K SVA GL
Sbjct:   81 EPATKVKFQRSLSLPGCSTSLSLLGTGYR-EKVFAIIGVKVYAAGLYVNDSVFSR-LDDWRGHSAAAIQQDTSLFNMIFEANLEKSLRIVLVRDIDGKTFWDALDEAISPRIKSPTAEDKSALSTFRGV----FQGKPLKKETSIFLTWIDPTKMLVSLSFDGTPSSVDATIESTNVASALFDVFLGGDPVSPSLKASVANGL 277          
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|1026073502|ref|XP_016581060.1| (PREDICTED: fatty-acid-binding protein 3, chloroplastic isoform X1 [Capsicum annuum])

HSP 1 Score: 89.7373 bits (221), Expect = 6.544e-18
Identity = 65/213 (30.52%), Postives = 105/213 (49.30%), Query Frame = 0
Query:   23 EPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGS--------------KALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGS---EAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTIN-----GKKQGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGL 213
            EPATK+KF+ ++SLPGS   LSL G G R +K+   + +KVY  GLYV+  V  R L  ++G  A                 +LF+ +   N +K +L+ + R +   T  +AL E++ PR+   +   ++AL  F+DV     +G   +            +K++V+++           I S  +A AL   +L  + VS  +K SVA+GL
Sbjct:   73 EPATKVKFQRSLSLPGSSTSLSLLGTGYR-EKVFAIIGIKVYAAGLYVNDSVFSR-LDAWRGRSAAEIQQAPSFAAEIQQVPSLFNNIFEANLEKSLLIVLVRDIDGKTFWDALDEAISPRIKSPTADDKSALSTFRDV----FQGKPLKKETSIFLTWIDPTKMLVSLSFDGMPSSVDATIESTNVASALFDVFLGGDPVSPTLKASVAKGL 279          
BLAST of EWM23313.1 vs. NCBI_GenBank
Match: gi|1109238085|ref|XP_019193718.1| (PREDICTED: fatty-acid-binding protein 3, chloroplastic isoform X1 [Ipomoea nil])

HSP 1 Score: 89.3521 bits (220), Expect = 7.673e-18
Identity = 62/203 (30.54%), Postives = 98/203 (48.28%), Query Frame = 0
Query:   23 EPATKIKFEETISLPGSVAGLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKA----GSKALFDALETGNFDKIVLLKMARKVGAATLVNALAESVKPRLGKGS---EAALLQFQDVLLAGLKGGEAETGKQFGFGIQGGSKLIVTINGKK-----QGEIASGPLAQALLKTYLDNNAVSKDMKESVAQGL 213
            EP T +KF+ ++SLPG    LSL G G R +K+   + VKVY  GLYV++ + + KL  ++G  A        LF+ +     +K + + + R V   T  +AL E++ PR+   S   E AL  F+ +     +G   + G          +K++V ++          +I S  +  AL   +L  N VS  +K SVA GL
Sbjct:   84 EPTTNVKFQRSLSLPGCCTSLSLLGTGYR-EKVFAIIGVKVYAAGLYVNESI-LNKLDAWRGRSAAELQNDSPLFETIFKAPLEKSLSIVLVRDVDGKTFWDALDEAISPRIKSPSADDETALSTFRTI----FQGRPLKKGTFIVLTWVDPTKMLVCVSSDATPSSIDAKIESANVTSALFDVFLGRNPVSPSLKASVANGL 280          
The following BLAST results are available for this feature:
BLAST of EWM23313.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104320|gb|EWM23313.1|2.088e-153100.00Chalcone isomerase, subgroup [Nannochloropsis gadi... [more]
gi|553194490|ref|XP_005855968.1|2.813e-137100.00hypothetical protein NGA_0361402 [Nannochloropsis ... [more]
gi|298707876|emb|CBJ30273.1|3.500e-4348.48Chalcone Isomerase [Ectocarpus siliculosus][more]
gi|926790903|ref|XP_013903925.1|5.110e-2134.85hypothetical protein MNEG_3049 [Monoraphidium negl... [more]
gi|1026073504|ref|XP_016581062.1|1.677e-1932.02PREDICTED: fatty-acid-binding protein 3, chloropla... [more]
gi|1000947943|ref|XP_015580422.1|4.577e-1931.88PREDICTED: fatty-acid-binding protein 3, chloropla... [more]
gi|1044575328|ref|XP_017424354.1|1.814e-1832.02PREDICTED: fatty-acid-binding protein 3, chloropla... [more]
gi|1111119396|ref|XP_019249623.1|4.336e-1831.53PREDICTED: fatty-acid-binding protein 3, chloropla... [more]
gi|1026073502|ref|XP_016581060.1|6.544e-1830.52PREDICTED: fatty-acid-binding protein 3, chloropla... [more]
gi|1109238085|ref|XP_019193718.1|7.673e-1830.54PREDICTED: fatty-acid-binding protein 3, chloropla... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7363rna7363Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications