rna7363, rna7363 (mRNA) Nannochloropsis gaditana

Overview
Namerna7363
Unique Namerna7363
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3024
Alignment locationCM002471.1:419658..421314 -

Link to JBrowse

Properties
Property NameValue
ProductChalcone isomerase, subgroup
Orig transcript idgnl|cribi|Naga_100053g18.5053.mrna
Orig protein idgnl|cribi|Naga_100053g18.5053
GeneCHI
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:419658..421314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CHIgene7126Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23313.1cds7346Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7363rna7363-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7363 ID=rna7363|Name=rna7363|organism=Nannochloropsis gaditana|type=mRNA|length=3024bp
CGTTCTACACTTCGATATGTTTCTATGTTATCGGCAAGTAGAAGGAAAAT
TCAACGCCTCGTAAAGTGAAAAAAAATGGTATTGGATGCGTCACTGACGT
CCTCCATAGGCCAGTTCTCAGTTCGAAGTTTTCTTGCGGGCTTGACGTCC
CATCACTTCCAAATGAAAATTTCCAGGAATGCTCGAGTGTATCTGCCTCC
TATCATCCAAACTTGAGCTCAGGAGGAATGATTACGCGTACGATGCTGGG
CCGTGATTATGGAGGTCACAATTAAATTCTAGACCCCGATAATTTCACTT
TTAGAACAAGTATTGGAAGCGCTTGCCTAGCCGTTTTCGTACATGTCTTT
TCTTTTAACGACCCGTGGTCGGTCTCCAGGAGCACTTGATCGGAACGCTT
GGACAGCTACTTTGCCAGCAACAGGATTGCTTCTGACACATTATCATACA
GATAGCATGTGTGGAACACAGAAAGACATATGGTTTCCGCGGCTCTCTAG
AAGCTGGATCTTGGCGGGGTTGCCCCACACGAGCGGTGTTCTTCTTGGCG
CTTCTCCGCAACGTCAAGGCCAAGAAATAAATTGATCGATCGCCCTGATC
CTCGCGAGCGCCATGCCAAGTATAATTCGTGTAACTCACTTTTCAGCAGG
TGATAAAGCTTAATACGACTAAGGGGTGGAGGAGGAGCGACCACATAGCA
TCGCAAGAACCCCCGCATTTTTCATTCCGCCTGAGAGGCTTTTATCAAGT
TGTGCTGGTATGGCCCCCCTGACACCGTACAGTCTGTTAAAAGGACCTTC
AAATTGGAGGTCGAAATCGATGCTGCTACATTTAGCCATTCTTTTTCTAC
ATCATTCTTGTGCGACCGCGGACAGTGTGTCACCCAAGAGCAATCGAGTG
TGGTGCGGGAGGTCGCGCACGAACTCAACATGGACACCAATTCCTCCTGT
CCCAATGGGAAGACTGGCTGTTTTTTTTTTTCCGGAAAGACAAAAAGGAA
AAGACAACGAGAGGTCCATCAAAGCAATCAAGATGAGATCGAATAACACA
GGAGATGCGAAGGTCAAACCGGCTGTTGCCATGAAAAGCCCGAGTCTTAC
AGATGTACCGCTTTGGGCCTCCAACCATCCTTCTTCGTCGGTCTCTTCGC
TGCCCGTAACCGACCGCACTCCTCCCGCACATTTGAATAGAACACCGCCG
ACTGCAGACAACGCCGGTGTCCGATCGGGATGGACGGTTCCCCGGCGCTG
GGTCGGTCTGCTAGTAGACGAGTGGCAGTTCCGCGTTGAGAGCCTTGACT
CCTACCGCCGTGTGGTCCGAAGCCGGTTGGATGACTCTTTAACACGTTTT
CAGACACATTACGAGGCGGCCTCCCGGGATGTGCGCAGGGATATGGATAA
GCAGCTCGCCAAGGCCTCTGCTCTACAAGAGGACTACATGGAGCGCATTG
CCCAGCAGCAGCAGCGCCTGGCAGAGCTCACGCGTTCTGAATTGCGCAGT
CGCCAGCAGGGATTCAACCAAAGCCTCGAGCAGTTCAAGCGCCAGTACGA
CGACACCTGGGGCCGCTTCTCGGGAACGGTGCGGAAGCTCGGTCCCTTCA
CCAAGGCCGAAGTGGCGGAGCAGCAACGCCGCCTGGACGAGACTTTTCAG
CAGTTTATGACGCAGTACCTGAACAGTACCGCTGAGGTCCGCGGCTACAT
TGATCGGATGATGCACATCTCTAGCGACGTCTTCCCTCGCCTCTCCATGG
AAGACGACCAAGTCCGGGGCCTGGTGCAGCGCCTGCGGGAAGAAGAGGTA
GCCAAGCTGGCCCGGCTGGGGAAAGCCGGTGTCCGCGTCGAGCGAGCGCG
GCTGGAAGGCGTGGTGGAGAGGCTGCGGGAGCAGCAGGAACGGATGCTGC
GGCACTGGTCGCACCAGCGCGGGGAGCTTGACGCGACGCTGAAGCGAGTG
ATGGAGCAGCTCTTGAATTTCAACCGGCTCTACGACGACCTGATTGCCCG
CAAGGAGTCCAACCTGTATGCGGACTCCCTCAACGACAAAGTCCTTCGTC
GGGTGCTCGAGTGCCTGGACCAAGGAGAGGCAGACGGATGGGAACTCGTC
TCGGACGCCAAGGGCGTGACCGTGCACCGCAAGAATCTTCCCTCCATGGA
CGGGCGCGTGTCCAAATACTGCTGCATCAAGGCCAGCGGCACTCTGGCCG
CCAGCCCGGACGACATTCTCTCCCTCTTCGCCGACAATACGCGAGTGCCT
GAATACAACAAGTTCTACGCGGAAGGTCGTGACCTGGAGGCAATCAACGA
ACACACCAAGGTGGTATGGGCGGCCAGTCCACCTATGTTTTTCTTCAAAC
CTCGAGACTTCTGCACAGTTGTGCACTACCGCAAGCTGCAAGACGGCACT
GTCGTTGTCGTCAACCGCGGAGCCGAGCATCCTGAGGCGCCTCGGACGGA
CAAATACGTGCGCGCTGAGATTCTCATGGGCGCCAACATCATCCAACCCG
TGCCCGGCAAGCCCCACAACGCCGTTTTCACGATCGTCACGCAGGTCGAC
CCAGGGGGCTTCGCGCCCCCCGCGATCGTCAATAAGGTCACCTCTTGGGG
CCCTCCAACCTTTTTCAGAGAGGTAGAGGCGGCAGCGAGGACCACACACA
AAATCCCTGCTCCGATGCGGGTAAAGGATGCGGCCCCTAGCCCTGAGTCC
CCGGCCACAGCATCGACTGCCCCGTCTAGGACCTCCATGCCTAATAGGGT
TTCCCGCCCTCCGCCTTTGTTGCCCTCTGAAAGGGCTCGACGAGGGATGT
GAAAATCGTTTCGGCTGTGTTTAGAAGGTGTACAAAGGCCGCAGGATAAA
AATGAAGCTTATCAAAAGCTAAGCGTTCCGAAAGCTGAGTTTTCCTTCTT
CTGTTACTCTCTTTTCAGGTTTTTTTTTCCCTATCCGAGAGACAGAACCA
TCTTGATGTCGATTGAAACGTCTTACTTCACGAGATTGATCCACGTCAGT
AGCCCTTGGGCCACCGACTCCTTC
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protein sequence of rna7363

>rna7363-protein ID=rna7363-protein|Name=rna7363|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MGRLSLACCVSALLALTTYAMIEPATKIKFEETISLPGSVAGLSLAGVGV
RVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFKGHKAGSKALFDALETGN
FDKIVLLKMARKVGAATLVNALAESVKPRLGKGSEAALLQFQDVLLAGLK
GGEAETGKQFGFGIQGGSKLIVTINGKKQGEIASGPLAQALLKTYLDNNA
VSKDMKESVAQGLLTWINLVK
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mRNA from alignment at CM002471.1:419658..421314-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7363 ID=rna7363|Name=rna7363|organism=Nannochloropsis gaditana|type=mRNA|length=1657bp|location=Sequence derived from alignment at CM002471.1:419658..421314- (Nannochloropsis gaditana)
TAGGGACGCATCATAATCTAAAAGCCATTGGATGGCTTGGTTGGGGAGTA
TCAAGGAGGTATCAAGGATCAGGGAACCCATCGTACAATGACTTCGACAG
TGTCGTGTTGTACCTGCTGATTGCTTGCTTTAGAATGGTGCACGAAGGCT
CATCGTGCGTTAGAACGTGTGCACGAAGTCGCACACCCTTTATCGCTGGC
TAAATGACTTAATTTTCGCCGGCACGTGCGGTCTCTCCTTGCAGCCTGTC
GCCTGATGCTTGAAGAGAATTCGTCTCGCCTTCACTGCAAAATGACTATG
AAGCTGATGCCCGAGATTCTGCGGACAATGCGGTGGTCTCCCAATGCGAC
GGCGACAAGACACATACATGCTGAGGCCCAGCATTACAGCACAGTTGCAC
GACTTTGACGGTGTCGTTTAGGATACTAGTTATGAGCAGAAATGGCATCG
TTTTGGCTACGGCCTTGCTTCCCCCCCCCCCAAGTCTACCCTTGCAGCAC
TCAATACCTCATTCCTTTCTGTTCTTATTGCCCAGCACATAGTCACGTAT
AAGCAGGATGGGCCGTTTGTCACTTGCTTGCTGTGTCTCAGCCCTTCTGG
CCTTGACAACATATGCGATGATTGAGCCGGCTACCAAGATCAAGTTTGAG
GAAACCATTTCTTTGCCAGGAAGCGTTGCCGGCCTTAGTCTTGCCGGTGT
GGGTGTGCGTGTGAAAAAGTTGGTCGGACCTTTAGCTGTCAAGGTCTACG
GCGTGGGTTTGTACGTTGACAAGGGCGTGGCGGTGAGAAAATTGAGCAAA
TTTAAGGGCCACAAAGCAGGATCCAAGGCACTATTCGATGCCCTGGAAAC
TGGAAATTTCGATAAAATTGTGCTCTTGAAGATGGCGCGAAAGGTGGGTG
CGGCGACCCTGGTCAATGCCTTGGCAGAAAGCGTGAAGCCTCGCCTCGGA
AAGGGCTCGGAAGCGGCGCTTCTGCAATTCCAAGATGTGCTTTTGGCAGG
CCTCAAGGGCGGCGAGGCCGAGACCGGCAAGCAGTTCGGCTTTGGTATTC
AGGGGGGCAGTAAATTGATCGTGACAATTAACGGAAAGAAACAGGGTGAG
ATAGCCAGCGGTCCTTTAGCTCAGGCACTGCTTAAAACTTACCTCGACAA
CAATGCCGTCTCTAAAGATATGAAGGAGTCGGTGGCCCAAGGGCTACTGA
CGTGGATCAATCTCGTGAAGTAAGACGTTTCAATCGACATCAAGATGGTT
CTGTCTCTCGGATAGGGAAAAAAAAACCTGAAAAGAGAGTAACAGAAGAA
GGAAAACTCAGCTTTCGGAACGCTTAGCTTTTGATAAGCTTCATTTTTAT
CCTGCGGCCTTTGTACACCTTCTAAACACAGCCGAAACGATTTTCACATC
CCTCGTCGAGCCCTTTCAGAGGGCAACAAAGGCGGAGGGCGGGAAACCCT
ATTAGGCATGGAGGTCCTAGACGGGGCAGTCGATGCTGTGGCCGGGGACT
CAGGGCTAGGGGCCGCATCCTTTACCCGCATCGGAGCAGGGATTTTGTGT
GTGGTCCTCGCTGCCGCCTCTACCTCTCTGAAAAAGGTTGGAGGGCCCCA
AGAGGTGACCTTATTGACGATCGCGGGGGGCGCGAAGCCCCCTGGGTCGA
CCTGCGT
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Coding sequence (CDS) from alignment at CM002471.1:419658..421314-

>rna7363 ID=rna7363|Name=rna7363|organism=Nannochloropsis gaditana|type=CDS|length=666bp|location=Sequence derived from alignment at CM002471.1:419658..421314- (Nannochloropsis gaditana)
ATGGGCCGTTTGTCACTTGCTTGCTGTGTCTCAGCCCTTCTGGCCTTGAC
AACATATGCGATGATTGAGCCGGCTACCAAGATCAAGTTTGAGGAAACCA
TTTCTTTGCCAGGAAGCGTTGCCGGCCTTAGTCTTGCCGGTGTGGGTGTG
CGTGTGAAAAAGTTGGTCGGACCTTTAGCTGTCAAGGTCTACGGCGTGGG
TTTGTACGTTGACAAGGGCGTGGCGGTGAGAAAATTGAGCAAATTTAAGG
GCCACAAAGCAGGATCCAAGGCACTATTCGATGCCCTGGAAACTGGAAAT
TTCGATAAAATTGTGCTCTTGAAGATGGCGCGAAAGGTGGGTGCGGCGAC
CCTGGTCAATGCCTTGGCAGAAAGCGTGAAGCCTCGCCTCGGAAAGGGCT
CGGAAGCGGCGCTTCTGCAATTCCAAGATGTGCTTTTGGCAGGCCTCAAG
GGCGGCGAGGCCGAGACCGGCAAGCAGTTCGGCTTTGGTATTCAGGGGGG
CAGTAAATTGATCGTGACAATTAACGGAAAGAAACAGGGTGAGATAGCCA
GCGGTCCTTTAGCTCAGGCACTGCTTAAAACTTACCTCGACAACAATGCC
GTCTCTAAAGATATGAAGGAGTCGGTGGCCCAAGGGCTACTGACGTGGAT
CAATCTCGTGAAGTAA
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Synonyms
Publications