rna7352, rna7352 (mRNA) Nannochloropsis gaditana

Overview
Namerna7352
Unique Namerna7352
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2297
Alignment locationCM002471.1:396162..397716 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100053g5.5042.mrna
Orig protein idgnl|cribi|Naga_100053g5.5042
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:396162..397716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100053g5gene7115Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7352rna7352-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23302.1cds7335Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7352 ID=rna7352|Name=rna7352|organism=Nannochloropsis gaditana|type=mRNA|length=2297bp
ACCGTGATCCTGACGGATCTCACATTTCACACACCTCAGGAAAGTCCGCC
ACAATTATTGCCGCCATTTTCGCCAGGAAGTGCTGAAACTCAAAGACGCG
TCATTCGCTCCCGTGGGCCTTATAACCCTTTGTGGCACGCTAAATAATGC
ACACTCCGAGCCATGTAAAGTTGAGCGTCGCCATATGCGCCATGAGCGTA
CTCTTTCCTGTACAGGATGTGTCGGCTTTCCTGACTCCTGCAGCAAGTGG
GCATCGGAACCCCCCCCTTGCTCCGAGAAGTCCGACGTCAGACCCAACTG
CCTTGGCAGTCAGCACTGAAGGCGACCCTGACCGCTGCAAGATCCGGAAC
GATGTGGAACAGCAATTTAATCGCAAGGATGCCGTGCGCTCCTTGAATGC
ATGGACCCTCGGAGCCACGGCAGGGGCCACTTGGGCGGCATTGACCATGG
GGGGCTCAAGGGCAAACTCTCCAAGTGTCCCCGACTTGGCGCCGATGGCT
GCGTCTTCAAGCGATGGCCCGGTAGAAGGTGCAGTTGTGCGGAAATCAGT
ACCGGAACTGAGGTTTGAAATGCTGAAAAAGGGGTTGGACCTGACGCATG
CGTTTCAGTTCGAAGAGGCGGAGGACGTTTACACAGAGCTGATAGGGCTC
TTCGACAGCGACTACACAAGTTTGAGCGATCAGGAGAAGCAGCTGGTGGC
AAAAGCGTTCTCGAATCGAGGCAATGTCCGCTGCTCCTTGACGCGAGTCA
GCGAGGCGCTGCTAGACTACAGCCGAAGCATTGAGCTGTGTCCTGACACG
GCCGAGTACTGGACAAACCGGGGCTTGGCCTTCGAAGTGATAGCGGACGC
ACTTCTTGCAACACGGGAAAAGGACGCATTCCAATTCTATGAGACGGCCA
TCGCCGACTACGAGCACGCACTGGTCATGGACCCCGAGAACCACCGGCTC
TACCTTAATGCTGGCGACGTGCTCACACGCACCCGTCGGCATGACCTTGC
ATTGGAGTACTATCGCAGAGCCCTTGCCTTGTTTCCCATGTCTCCGGCGA
GTCGCGGCAAGGTGGCGTTGCTGGAGGTGGAGAACGGTAATGTTGGGCGA
GGCATGTACATGCTTGAGTCCATCAATCGACGGTAAGTCTAAAACGTAGG
CAAAATCGAAAGGAAAAGAAATGGGGTACGCTTTGATTCACAAAAAAGTT
TCTTGTTTGAAAATTACTTAGATGGCCTTGAAGGTGACATACCAGTGCGG
GAAGAATTTCGATTTTTCATGAATTTAGCATGTGTGCTTTGACTGTGATA
CATGACCTCTAATTGTATTTTATCGGCGCTTCTATCCTCCATGTCTGCAG
TAATCCGGACTTTGCGGAAATGCTTCTTGCATCAGCTGCCTTGGATTGGA
CTCTCGGCCGATTTGTCGAAGGCGTGGATTCGTATCGTGAAGCAGTGTCG
CGTGATCCGCGACTGTTCGACGACTCGTACTTAAAGATGGATTGTCACTG
GCCTCCGACCATGTTAAAAATGCTGGACAAGCTCCGAGAAGCTGGCACCA
TTGAAGGGCTGCGGTCTACTGCGGTGTCTTGGTTCGACAGTCGAGGAGAC
ATTATTTGAGTGTCCTAGACAAAGTGAAGGCGCTGATTGAGTCACCTTTC
CTGATCGGTCTGAAGACGTTGTTTGGACGTTGTTTGAAGACCATGAATAT
TGGCAGCTACAGAAACATGATTTGCGCAGAATGTAAATATACGCGGGTGC
GGAATTCGAAGTGTGATTATGTGTAAACGCTTTCTTCAGCGTCAGCTCAC
CGCTGGCTTAGACTAGCTACTTTCTTTCACAGAAAGTATTCGACATGTAA
CAAGCATGAAAAATGTCTATAAGGTCGTGACAATGCAAATGTGTAGTTAC
CGATATGTTTTTACAAACTTCCAGGATTCTTGTATCTCTAATTTTTTTTG
CAGATTTTTTTCAAGAAACGATCTCAGGCAAAACTTGTGGACAGAATTCT
CTTCACGAGAAAAGAAGCTACCCCGCCGGTGATTTTTTTGAAGAACGAAC
AAATTTGTCGCCGAGTCCTTGCTGGAGTTAAGTCGTCCCTGAATAGAGGC
CAAACAAAAACTGCGAAATGTACATCTGATGTGAAGTAATTATCTGAAAT
GTAGAAGGCAGCACCAGCAACCGGGAATGATACGCTTTTGCATTTTAGAG
AAATTGTTCGGGTGTTCTGCTATCAAAATTGCCCTCCTCATGATGTTTCT
TTTTTTCCAACAACTAAAATGTAAAGAAAAGATTATTGATGCTTTTA
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protein sequence of rna7352

>rna7352-protein ID=rna7352-protein|Name=rna7352|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MNPLQHSITERTTTSDKADAAFENHINAFLAKKAGVLNLAHIDIGEKLPE
RAKRMAGVATSVYFEPYFAATSSGVGSLAARANSIDAGLAYCKKVKEATA
SSVKVEK
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mRNA from alignment at CM002471.1:396162..397716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7352 ID=rna7352|Name=rna7352|organism=Nannochloropsis gaditana|type=mRNA|length=1555bp|location=Sequence derived from alignment at CM002471.1:396162..397716- (Nannochloropsis gaditana)
AGAGATAGGGTTTAAAAAGAGTCTGAGAATGATGGCGTTGATGGTTTGTC
CTGAACGTTGTTCTCGCGCCGCACAAGCGCGTCACACGGGGCAGGCACCG
GCTTCTCTCTCGCCCCCCTTCCGCTCACGCTCATTGGTATCAGCGTTCTC
GCTTCTCACCGCAGACGCAATTTAGTCCGGGCACGCGGACGACGCGCCTT
CATCAGTCTAGAAAAATCCACGAACATCTTCGACCAGTCAAGTGATGGTA
AGTGTCGTGCATCGTGCGCCGCTTCCCCTCGATACTCTGTGAACGGTCAT
CTATGTGCTCGCCCTAGAGTCCCAGATCAGATGCTTTTAGAATTTAGCAT
ACTGGCGCGTGTGACTTTGTCGGCGTTCCTCTCCTACTACCTCTCTCAAT
GGTTTGTCCCATAATTTGCTGTTCGCGGTATACTTCGTGTTCTTGTCATC
ATAAGAAGTAGTTCCCTCTGCGGGGAGAGCCAACCTCATGACTTGAAAGC
GTAAAGTGCATTCATCGCATTCTTTCCATCCCATTTGCCTGTAATTTCTG
ATCAGTACATGAATGCTCTGTTCCTGCGTCTTGCGATAAGGGTATGGATT
TCATCATGGCGAGTCTCGAAATTTTTCGTCAGTTCCATGCCCTGTGAATT
CGTATTATCGGCGCTGCTGTTGAGAGTAAGCGGCTTGTCCAGTGAATGAA
CTTCTGTTGCCGTCCCACTCAGACCAGCGTGAGGCGGTCAATCACTTATC
TCCACCGCTTCTTCTCGTACGTTCTATCCTTCTTTCATGCACAATAGAAC
CCACTGCAGCACAGTATTACGGAGCGAACTACCACATCAGACAAAGCAGA
TGCCGCATTCGAAAATCACATAAATGCTTTCTTGGCAAAAAAGGCCGGTG
TTCTTAATTTAGCGCACATAGATATCGGTGAGAAACTTCCCGAACGGGCG
AAGAGGATGGCAGGTGTGGCTACGTCCGTGTACTTCGAACCCTACTTTGC
CGCAACAAGCTCTGGCGTAGGCAGCCTGGCAGCCCGCGCCAATAGCATCG
ATGCCGGCCTCGCGTACTGCAAGAAAGTCAAAGAGGCGACAGCATCCTCG
GTGAAAGTTGAAAAATGAGGATTTCATCCAGATCATGAAGGAGATGGAAA
TGTAAAAAAGGAATTGAATGGAGGAAGGGCTCTTGTCATGTGCATGTGTG
TGACATAAGAGGGCGTGAGACGTACAAGGTTACTACTACTTTGTGCATGT
GTGTGACATAAGAGGACGTGAGACGCACAAGGTTACTACTACTTTGTCCA
TTTTTGGCTCCGCGATAGGCGTGAAGTGATCCCTGCCAAAACTAAAGAAC
AAGATCAATCATTCATACAAAGTAAGCCTTCTTGTAATAATGGGTAGTGT
GTCAACGATGCGTCGTCTTTAGGCTACGTTCCTAAGCCGTTCGGCGAGAG
GAGGGATCACCCCTAGTAGACGATGGGAAGTCTCCCTGTCTAATGGACTG
AGTGACACGTATGCGGTGATCTCATCTCAAAAGAAAACCCGACAAGGAGC
AGTGA
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Coding sequence (CDS) from alignment at CM002471.1:396162..397716-

>rna7352 ID=rna7352|Name=rna7352|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at CM002471.1:396162..397716- (Nannochloropsis gaditana)
AACCCACTGCAGCACAGTATTACGGAGCGAACTACCACATCAGACAAAGC
AGATGCCGCATTCGAAAATCACATAAATGCTTTCTTGGCAAAAAAGGCCG
GTGTTCTTAATTTAGCGCACATAGATATCGGTGAGAAACTTCCCGAACGG
GCGAAGAGGATGGCAGGTGTGGCTACGTCCGTGTACTTCGAACCCTACTT
TGCCGCAACAAGCTCTGGCGTAGGCAGCCTGGCAGCCCGCGCCAATAGCA
TCGATGCCGGCCTCGCGTACTGCAAGAAAGTCAAAGAGGCGACAGCATCC
TCGGTGAAAGTTGAAAAATGAATGAACCCACTGCAGCACAGTATTACGGA
GCGAACTACCACATCAGACAAAGCAGATGCCGCATTCGAAAATCACATAA
ATGCTTTCTTGGCAAAAAAGGCCGGTGTTCTTAATTTAGCGCACATAGAT
ATCGGTGAGAAACTTCCCGAACGGGCGAAGAGGATGGCAGGTGTGGCTAC
GTCCGTGTACTTCGAACCCTACTTTGCCGCAACAAGCTCTGGCGTAGGCA
GCCTGGCAGCCCGCGCCAATAGCATCGATGCCGGCCTCGCGTACTGCAAG
AAAGTCAAAGAGGCGACAGCATCCTCGGTGAAAGTTGAAAAATGAATG
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Synonyms
Publications