EWM23302.1, cds7335 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23302.1
Unique Name	cds7335
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002471.1:397470..397472 -
Alignment location	CM002471.1:396599..396919 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23302.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100053g5.5042.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:397470..397472 -
CM002471.1	supercontig	CM002471.1:396599..396919 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM23302.1 vs. NCBI_GenBank
Match: gi|553194521|ref|XP_005855977.1| (hypothetical protein NGA_0524200 [Nannochloropsis gaditana CCMP526] >gi|422293085|gb|EKU20386.1| hypothetical protein NGA_0524200 [Nannochloropsis gaditana CCMP526] >gi|585104309|gb|EWM23302.1| hypothetical protein Naga_100053g5 [Nannochloropsis gaditana])

HSP 1 Score: 218.779 bits (556), Expect = 3.433e-72
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query:    1 MNPLQHSITERTTTSDKADAAFENHINAFLAKKAGVLNLAHIDIGEKLPERAKRMAGVATSVYFEPYFAATSSGVGSLAARANSIDAGLAYCKKVKEATASSVKVEK 107
            MNPLQHSITERTTTSDKADAAFENHINAFLAKKAGVLNLAHIDIGEKLPERAKRMAGVATSVYFEPYFAATSSGVGSLAARANSIDAGLAYCKKVKEATASSVKVEK
Sbjct:    1 MNPLQHSITERTTTSDKADAAFENHINAFLAKKAGVLNLAHIDIGEKLPERAKRMAGVATSVYFEPYFAATSSGVGSLAARANSIDAGLAYCKKVKEATASSVKVEK 107

The following BLAST results are available for this feature:

BLAST of EWM23302.1 vs. NCBI_GenBank

BLAST of EWM23302.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|553194521\|ref\|XP_005855977.1\|	3.433e-72	100.00	hypothetical protein NGA_0524200 [Nannochloropsis ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7352	rna7352	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications