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Properties
Property Name | Value |
Product | tetratricopeptide tpr_1 repeat-containing protein |
Orig transcript id | gnl|cribi|Naga_100053g4.5082.mrna |
Orig protein id | gnl|cribi|Naga_100053g4.5082 |
Gbkey | mRNA |
Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002471.1 | supercontig | CM002471.1:393107..395961 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7351 ID=rna7351|Name=rna7351|organism=Nannochloropsis gaditana|type=mRNA|length=2079bp ACCGTGATCCTGACGGATCTCACATTTCACACACCTCAGGAAAGTCCGCC ACAATTATTGCCGCCATTTTCGCCAGGAAGTGCTGAAACTCAAAGACGCG TCATTCGCTCCCGTGGGCCTTATAACCCTTTGTGGCACGCTAAATAATGC ACACTCCGAGCCATGTAAAGTTGAGCGTCGCCATATGCGCCATGAGCGTA CTCTTTCCTGTACAGGATGTGTCGGCTTTCCTGACTCCTGCAGCAAGTGG GCATCGGAACCCCCCCCTTGCTCCGAGAAGTCCGACGTCAGACCCAACTG CCTTGGCAGTCAGCACTGAAGGCGACCCTGACCGCTGCAAGATCCGGAAC GATGTGGAACAGCAATTTAATCGCAAGGATGCCGTGCGCTCCTTGAATGC ATGGACCCTCGGAGCCACGGCAGGGGCCACTTGGGCGGCATTGACCATGG GGGGCTCAAGGGCAAACTCTCCAAGTGTCCCCGACTTGGCGCCGATGGCT GCGTCTTCAAGCGATGGCCCGGTAGAAGGTGCAGTTGTGCGGAAATCAGT ACCGGAACTGAGGTTTGAAATGCTGAAAAAGGGGTTGGACCTGACGCATG CGTTTCAGTTCGAAGAGGCGGAGGACGTTTACACAGAGCTGATAGGGCTC TTCGACAGCGACTACACAAGTTTGAGCGATCAGGAGAAGCAGCTGGTGGC AAAAGCGTTCTCGAATCGAGGCAATGTCCGCTGCTCCTTGACGCGAGTCA GCGAGGCGCTGCTAGACTACAGCCGAAGCATTGAGCTGTGTCCTGACACG GCCGAGTACTGGACAAACCGGGGCTTGGCCTTCGAAGTGATAGCGGACGC ACTTCTTGCAACACGGGAAAAGGACGCATTCCAATTCTATGAGACGGCCA TCGCCGACTACGAGCACGCACTGGTCATGGACCCCGAGAACCACCGGCTC TACCTTAATGCTGGCGACGTGCTCACACGCACCCGTCGGCATGACCTTGC ATTGGAGTACTATCGCAGAGCCCTTGCCTTGTTTCCCATGTCTCCGGCGA GTCGCGGCAAGGTGGCGTTGCTGGAGGTGGAGAACGGTAATGTTGGGCGA GGCATGTACATGCTTGAGTCCATCAATCGACGTAATCCGGACTTTGCGGA AATGCTTCTTGCATCAGCTGCCTTGGATTGGACTCTCGGCCGATTTGTCG AAGGCGTGGATTCGTATCGTGAAGCAGTGTCGCGTGATCCGCGACTGTTC GACGACTCGTACTTAAAGATGGATTGTCACTGGCCTCCGACCATGTTAAA AATGCTGGACAAGCTCCGAGAAGCTGGCACCATTGAAGGGCTGCGGTCTA CTGCGGTGTCTTGGTTCGACAGTCGAGGAGACATTATTTGAGTGTCCTAG ACAAAGTGAAGGCGCTGATTGAGTCACCTTTCCTGATCGGTCTGAAGACG TTGTTTGGACGTTGTTTGAAGACCATGAATATTGGCAGCTACAGAAACAT GATTTGCGCAGAATGTAAATATACGCGGGTGCGGAATTCGAAGTGTGATT ATGTGTAAACGCTTTCTTCAGCGTCAGCTCACCGCTGGCTTAGACTAGCT ACTTTCTTTCACAGAAAGTATTCGACATGTAACAAGCATGAAAAATGTCT ATAAGGTCGTGACAATGCAAATGTGTAGTTACCGATATGTTTTTACAAAC TTCCAGGATTCTTGTATCTCTAATTTTTTTTGCAGATTTTTTTCAAGAAA CGATCTCAGGCAAAACTTGTGGACAGAATTCTCTTCACGAGAAAAGAAGC TACCCCGCCGGTGATTTTTTTGAAGAACGAACAAATTTGTCGCCGAGTCC TTGCTGGAGTTAAGTCGTCCCTGAATAGAGGCCAAACAAAAACTGCGAAA TGTACATCTGATGTGAAGTAATTATCTGAAATGTAGAAGGCAGCACCAGC AACCGGGAATGATACGCTTTTGCATTTTAGAGAAATTGTTCGGGTGTTCT GCTATCAAAATTGCCCTCCTCATGATGTTTCTTTTTTTCCAACAACTAAA ATGTAAAGAAAAGATTATTGATGCTTTTA back to topprotein sequence of rna7351 >rna7351-protein ID=rna7351-protein|Name=rna7351|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDP TALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALT MGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLT HAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTR VSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYET AIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSP ASRGKVALLEVENGNVGRGMYMLESINRR back to topmRNA from alignment at CM002471.1:393107..395961- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7351 ID=rna7351|Name=rna7351|organism=Nannochloropsis gaditana|type=mRNA|length=2855bp|location=Sequence derived from alignment at CM002471.1:393107..395961- (Nannochloropsis gaditana) ACCGTGATCCTGACGGATCTCACATTTCACACACCTCAGGAAAGTCCGCC
ACAATTATTGCCGCCATTTTCGCCAGGAAGTGCTGAAACTCAAAGACGCG
TCATTCGCTCCCGTGGGCCTTATAACCCTTTGTGGCACGCTAAATAATGC
ACACTCCGAGCCATGTAAAGTTGAGCGTCGCCATATGCGCCATGAGCGTA
CTCTTTCCTGTACAGGATGTGTCGGCTTTCCTGACTCCTGCAGCAAGTGG
GCATCGGAACCCCCCCCTTGCTCCGAGAAGTCCGACGTCAGACCCAACTG
CCTTGGCAGTCAGCACTGAAGGCGACCCTGACCGCTGCAAGATCCGGAAC
GATGTGGAACAGCAATTTAATCGCAAGGATGCCGTGCGCTCCTTGAATGC
ATGGACCCTCGGAGCCACGGCAGGGGCCACTTGGGCGGCATTGACCATGG
GGGGCTCAAGGGCAAACTCTCCAAGTGTCCCCGACTTGGCGCCGATGGCT
GCGTCTTCAAGCGATGGCCCGGTAGAAGGTGCAGTTGTGCGGAAATCAGT
ACCGGAACTGAGGTTTGAAATGCTGAAAAAGGGGTTGGACCTGACGCATG
CGTTTCAGTTCGAAGAGGCGGAGGACGTTTACACAGAGCTGATAGGGCTC
TTCGACAGCGACTACACAAGTTTGAGCGATCAGGAGAAGCAGCTGGTGGC
AAAGTACGTAGTAGAAGTCCACGCAAGAGGAGTATAAAGAAGTCGTGCAT
TTAAGGAATGTTCTCAGGCCTGTCGAGTAGGAGCAACGACAGGAGGTGAA
GCACTTGCAGCTATCCTCTTAGGCCAGAAGGAGAGTGTTACAAGGACGCA
CGGTATTGCGCTGCCGGTGGCCAAGAAACTGGATGAGTTTTAAAAACCAC
GCTAATTTCTCATGTATTCTCCATTCGTATGTGCGCAGAGCGTTCTCGAA
TCGAGGCAATGTCCGCTGCTCCTTGACGCGAGTCAGCGAGGCGCTGCTAG
ACTACAGCCGAAGCATTGAGCTGTGTCCTGACACGGCCGAGTACTGGACA
AACCGGGGCTTGGCCTTCGAAGTGATAGGTGAGTAGCTCGTGTGCTTCTT
AGTGTTGACCGGCGTCGCATGCTGTTGCTTTTTCAACTCGAGTGGCTGCT
TGGTCTGACAAGCGAGGTCCCCCCTCCCCAATCAAATACCTCTGGATTCT
TGCCCTTTTTCTACTCTGACGACTGTCATACTTGCGAACAGCGGACGCAC
TTCTTGCAACACGGGAAAAGGACGCATTCCAATTCTATGAGACGGCCATC
GCCGACTACGAGCACGCACTGGTCATGGACCCCGAGAACCACCGGCTCTA
CCTTAATGCTGGCGACGTGCTCACACGCACCCGTCGGCATGACCTTGCAT
TGGAGTACTATCGCAGAGGTATGTGGATAAATTTAAGTTTTAAAATTGTC
CCTTAAAGCGAAACATGCAGGCTTCCTTTGTTCCTGCTTCATTTTCCCCT
TGAGCCATATCATGCCTCCTTCATTTGAACATCTTCAAGCTGATGATTTT
AAGATACATATTATGTGTCATAATACAGCCCTTGCCTTGTTTCCCATGTC
TCCGGCGAGTCGCGGCAAGGTGGCGTTGCTGGAGGTGGAGAACGGTAATG
TTGGGCGAGGCATGTACATGCTTGAGTCCATCAATCGACGGTAAGTCTAA
AACGTAGGCAAAATCGAAAGGAAAAGAAATGGGGTACGCTTTGATTCACA
AAAAAGTTTCTTGTTTGAAAATTACTTAGATGGCCTTGAAGGTGACATAC
CAGTGCGGGAAGAATTTCGATTTTTCATGAATTTAGCATGTGTGCTTTGA
CTGTGATACATGACCTCTAATTGTATTTTATCGGCGCTTCTATCCTCCAT
GTCTGCAGTAATCCGGACTTTGCGGAAATGCTTCTTGCATCAGCTGCCTT
GGATTGGACTCTCGGCCGATTTGTCGAAGGCGTGGATTCGTATCGTGAAG
CAGTGTCGCGTGATCCGCGACTGTTCGACGACTCGTACTTAAAGATGGAT
TGTCACTGGCCTCCGACCATGTTAAAAATGCTGGACAAGCTCCGAGAAGC
TGGCACCATTGAAGGGCTGCGGTCTACTGCGGTGTCTTGGTTCGACAGTC
GAGGAGACATTATTTGAGTGTCCTAGACAAAGTGAAGGCGCTGATTGAGT
CACCTTTCCTGATCGGTCTGAAGACGTTGTTTGGACGTTGTTTGAAGACC
ATGAATATTGGCAGCTACAGAAACATGATTTGCGCAGAATGTAAATATAC
GCGGGTGCGGAATTCGAAGTGTGATTATGTGTAAACGCTTTCTTCAGCGT
CAGCTCACCGCTGGCTTAGACTAGCTACTTTCTTTCACAGAAAGTATTCG
ACATGTAACAAGCATGAAAAATGTCTATAAGGTCGTGACAATGCAAATGT
GTAGTTACCGATATGTTTTTACAAACTTCCAGGATTCTTGTATCTCTAAT
TTTTTTTGCAGATTTTTTTCAAGAAACGATCTCAGGCAAAACTTGTGGAC
AGAATTCTCTTCACGAGAAAAGAAGCTACCCCGCCGGTGATTTTTTTGAA
GAACGAACAAATTTGTCGCCGAGTCCTTGCTGGAGTTAAGTCGTCCCTGA
ATAGAGGCCAAACAAAAACTGCGAAATGTACATCTGATGTGAAGTAATTA
TCTGAAATGTAGAAGGCAGCACCAGCAACCGGGAATGATACGCTTTTGCA
TTTTAGAGAAATTGTTCGGGTGTTCTGCTATCAAAATTGCCCTCCTCATG
ATGTTTCTTTTTTTCCAACAACTAAAATGTAAAGAAAAGATTATTGATGC
TTTTA back to topCoding sequence (CDS) from alignment at CM002471.1:393107..395961- >rna7351 ID=rna7351|Name=rna7351|organism=Nannochloropsis gaditana|type=CDS|length=3960bp|location=Sequence derived from alignment at CM002471.1:393107..395961- (Nannochloropsis gaditana) CCCTTGCCTTGTTTCCCATGTCTCCGGCGAGTCGCGGCAAGGTGGCGTTG CTGGAGGTGGAGAACGGTAATGTTGGGCGAGGCATGTACATGCTTGAGTC CATCAATCGACGGTAACGGACGCACTTCTTGCAACACGGGAAAAGGACGC ATTCCAATTCTATGAGACGGCCATCGCCGACTACGAGCACGCACTGGTCA TGGACCCCGAGAACCACCGGCTCTACCTTAATGCTGGCGACGTGCTCACA CGCACCCGTCGGCATGACCTTGCATTGGAGTACTATCGCAGAGAGCGTTC TCGAATCGAGGCAATGTCCGCTGCTCCTTGACGCGAGTCAGCGAGGCGCT GCTAGACTACAGCCGAAGCATTGAGCTGTGTCCTGACACGGCCGAGTACT GGACAAACCGGGGCTTGGCCTTCGAAGTGATAGATGCACACTCCGAGCCA TGTAAAGTTGAGCGTCGCCATATGCGCCATGAGCGTACTCTTTCCTGTAC AGGATGTGTCGGCTTTCCTGACTCCTGCAGCAAGTGGGCATCGGAACCCC CCCCTTGCTCCGAGAAGTCCGACGTCAGACCCAACTGCCTTGGCAGTCAG CACTGAAGGCGACCCTGACCGCTGCAAGATCCGGAACGATGTGGAACAGC AATTTAATCGCAAGGATGCCGTGCGCTCCTTGAATGCATGGACCCTCGGA GCCACGGCAGGGGCCACTTGGGCGGCATTGACCATGGGGGGCTCAAGGGC AAACTCTCCAAGTGTCCCCGACTTGGCGCCGATGGCTGCGTCTTCAAGCG ATGGCCCGGTAGAAGGTGCAGTTGTGCGGAAATCAGTACCGGAACTGAGG TTTGAAATGCTGAAAAAGGGGTTGGACCTGACGCATGCGTTTCAGTTCGA AGAGGCGGAGGACGTTTACACAGAGCTGATAGGGCTCTTCGACAGCGACT ACACAAGTTTGAGCGATCAGGAGAAGCAGCTGGTGGCAAACCCTTGCCTT GTTTCCCATGTCTCCGGCGAGTCGCGGCAAGGTGGCGTTGCTGGAGGTGG AGAACGGTAATGTTGGGCGAGGCATGTACATGCTTGAGTCCATCAATCGA CGGTAACGGACGCACTTCTTGCAACACGGGAAAAGGACGCATTCCAATTC TATGAGACGGCCATCGCCGACTACGAGCACGCACTGGTCATGGACCCCGA GAACCACCGGCTCTACCTTAATGCTGGCGACGTGCTCACACGCACCCGTC GGCATGACCTTGCATTGGAGTACTATCGCAGAGAGCGTTCTCGAATCGAG GCAATGTCCGCTGCTCCTTGACGCGAGTCAGCGAGGCGCTGCTAGACTAC AGCCGAAGCATTGAGCTGTGTCCTGACACGGCCGAGTACTGGACAAACCG GGGCTTGGCCTTCGAAGTGATAGATGCACACTCCGAGCCATGTAAAGTTG AGCGTCGCCATATGCGCCATGAGCGTACTCTTTCCTGTACAGGATGTGTC GGCTTTCCTGACTCCTGCAGCAAGTGGGCATCGGAACCCCCCCCTTGCTC CGAGAAGTCCGACGTCAGACCCAACTGCCTTGGCAGTCAGCACTGAAGGC GACCCTGACCGCTGCAAGATCCGGAACGATGTGGAACAGCAATTTAATCG CAAGGATGCCGTGCGCTCCTTGAATGCATGGACCCTCGGAGCCACGGCAG GGGCCACTTGGGCGGCATTGACCATGGGGGGCTCAAGGGCAAACTCTCCA AGTGTCCCCGACTTGGCGCCGATGGCTGCGTCTTCAAGCGATGGCCCGGT AGAAGGTGCAGTTGTGCGGAAATCAGTACCGGAACTGAGGTTTGAAATGC TGAAAAAGGGGTTGGACCTGACGCATGCGTTTCAGTTCGAAGAGGCGGAG GACGTTTACACAGAGCTGATAGGGCTCTTCGACAGCGACTACACAAGTTT GAGCGATCAGGAGAAGCAGCTGGTGGCAAACCCTTGCCTTGTTTCCCATG TCTCCGGCGAGTCGCGGCAAGGTGGCGTTGCTGGAGGTGGAGAACGGTAA TGTTGGGCGAGGCATGTACATGCTTGAGTCCATCAATCGACGGTAACGGA CGCACTTCTTGCAACACGGGAAAAGGACGCATTCCAATTCTATGAGACGG CCATCGCCGACTACGAGCACGCACTGGTCATGGACCCCGAGAACCACCGG CTCTACCTTAATGCTGGCGACGTGCTCACACGCACCCGTCGGCATGACCT TGCATTGGAGTACTATCGCAGAGAGCGTTCTCGAATCGAGGCAATGTCCG CTGCTCCTTGACGCGAGTCAGCGAGGCGCTGCTAGACTACAGCCGAAGCA TTGAGCTGTGTCCTGACACGGCCGAGTACTGGACAAACCGGGGCTTGGCC TTCGAAGTGATAGATGCACACTCCGAGCCATGTAAAGTTGAGCGTCGCCA TATGCGCCATGAGCGTACTCTTTCCTGTACAGGATGTGTCGGCTTTCCTG ACTCCTGCAGCAAGTGGGCATCGGAACCCCCCCCTTGCTCCGAGAAGTCC GACGTCAGACCCAACTGCCTTGGCAGTCAGCACTGAAGGCGACCCTGACC GCTGCAAGATCCGGAACGATGTGGAACAGCAATTTAATCGCAAGGATGCC GTGCGCTCCTTGAATGCATGGACCCTCGGAGCCACGGCAGGGGCCACTTG GGCGGCATTGACCATGGGGGGCTCAAGGGCAAACTCTCCAAGTGTCCCCG ACTTGGCGCCGATGGCTGCGTCTTCAAGCGATGGCCCGGTAGAAGGTGCA GTTGTGCGGAAATCAGTACCGGAACTGAGGTTTGAAATGCTGAAAAAGGG GTTGGACCTGACGCATGCGTTTCAGTTCGAAGAGGCGGAGGACGTTTACA CAGAGCTGATAGGGCTCTTCGACAGCGACTACACAAGTTTGAGCGATCAG GAGAAGCAGCTGGTGGCAAACCCTTGCCTTGTTTCCCATGTCTCCGGCGA GTCGCGGCAAGGTGGCGTTGCTGGAGGTGGAGAACGGTAATGTTGGGCGA GGCATGTACATGCTTGAGTCCATCAATCGACGGTAACGGACGCACTTCTT GCAACACGGGAAAAGGACGCATTCCAATTCTATGAGACGGCCATCGCCGA CTACGAGCACGCACTGGTCATGGACCCCGAGAACCACCGGCTCTACCTTA ATGCTGGCGACGTGCTCACACGCACCCGTCGGCATGACCTTGCATTGGAG TACTATCGCAGAGAGCGTTCTCGAATCGAGGCAATGTCCGCTGCTCCTTG ACGCGAGTCAGCGAGGCGCTGCTAGACTACAGCCGAAGCATTGAGCTGTG TCCTGACACGGCCGAGTACTGGACAAACCGGGGCTTGGCCTTCGAAGTGA TAGATGCACACTCCGAGCCATGTAAAGTTGAGCGTCGCCATATGCGCCAT GAGCGTACTCTTTCCTGTACAGGATGTGTCGGCTTTCCTGACTCCTGCAG CAAGTGGGCATCGGAACCCCCCCCTTGCTCCGAGAAGTCCGACGTCAGAC CCAACTGCCTTGGCAGTCAGCACTGAAGGCGACCCTGACCGCTGCAAGAT CCGGAACGATGTGGAACAGCAATTTAATCGCAAGGATGCCGTGCGCTCCT TGAATGCATGGACCCTCGGAGCCACGGCAGGGGCCACTTGGGCGGCATTG ACCATGGGGGGCTCAAGGGCAAACTCTCCAAGTGTCCCCGACTTGGCGCC GATGGCTGCGTCTTCAAGCGATGGCCCGGTAGAAGGTGCAGTTGTGCGGA AATCAGTACCGGAACTGAGGTTTGAAATGCTGAAAAAGGGGTTGGACCTG ACGCATGCGTTTCAGTTCGAAGAGGCGGAGGACGTTTACACAGAGCTGAT AGGGCTCTTCGACAGCGACTACACAAGTTTGAGCGATCAGGAGAAGCAGC TGGTGGCAAA back to top
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