EWM23342.1, cds7334 (CDS) Nannochloropsis gaditana

Overview
NameEWM23342.1
Unique Namecds7334
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:395259..395815 -
Alignment locationCM002471.1:394884..395023 -
Alignment locationCM002471.1:394544..394720 -
Alignment locationCM002471.1:394268..394383 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23342.1
Producttetratricopeptide tpr_1 repeat-containing protein
Orig transcript idgnl|cribi|Naga_100053g4.5082.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:395259..395815 -
CM002471.1supercontigCM002471.1:394884..395023 -
CM002471.1supercontigCM002471.1:394544..394720 -
CM002471.1supercontigCM002471.1:394268..394383 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|585104349|gb|EWM23342.1| (tetratricopeptide tpr_1 repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0
Query:    1 MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
            MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR
Sbjct:    1 MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329          
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|553194499|ref|XP_005855971.1| (tpr repeat-containing protein [Nannochloropsis gaditana CCMP526] >gi|422293079|gb|EKU20380.1| tpr repeat-containing protein [Nannochloropsis gaditana CCMP526] >gi|585104348|gb|EWM23341.1| tetratricopeptide tpr_1 repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 677.552 bits (1747), Expect = 0.000e+0
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0
Query:    1 MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
            MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR
Sbjct:    1 MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329          
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|873232409|emb|CEM05563.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 153.295 bits (386), Expect = 1.697e-39
Identity = 76/191 (39.79%), Postives = 126/191 (65.97%), Query Frame = 0
Query:  139 RFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
            ++ + K GL+ T  F F+EAE ++TE+I  +++     S++ + ++A+A+++RGN R SL  +++AL+DYS +IE  PD A++W NR +A E  A+  L +  + A Q+Y+ A+ DYEHALV+ P + RLY N G++LT     D ALE +R+A AL P + A + ++ALL+ + G+V R  +++  I RR
Sbjct:  141 QYSLFKAGLEETAKFDFKEAEGIFTEIIDSYETPKAKESERARFMLARAYTDRGNTRVSLGELNKALVDYSCAIEYAPDEADFWLNRAIACEQKAEQSLTSSLQFANQWYKEALEDYEHALVLKPSDPRLYANTGEILTLLEDFDAALEKFRQASALAPSNVAYKARIALLDAQLGDVRRSHFIINDIVRR 331          
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|298705617|emb|CBJ28868.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.887 bits (346), Expect = 2.480e-34
Identity = 73/169 (43.20%), Postives = 115/169 (68.05%), Query Frame = 0
Query:  137 ELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDS-DYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIAD-ALLATREKD---AFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSP 300
            E+++E+ K+G++L     F  AE  +TE+I  F+S ++ + +   K L+A+A+SNRGN R SL +  EA+LDYS SI+L P+  E+W  RG+AFE +AD  +LA  +++   A  FYE+A+ADY+HA+V+DP++ R+Y++ GD  T   +   AL+ Y RA+ L PM+P
Sbjct:  149 EMQYELFKRGMELEDDDDFVGAERQWTEIIENFNSPNFRATNPGNKVLLARAYSNRGNTRLSLQKTREAILDYSESIDLVPEKGEFWLARGVAFEDMADRKVLARADRNVEVARTFYESALADYDHAVVLDPQDPRVYISRGDANTLLGQGRDALDNYIRAVNLSPMTP 317          
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|515390322|ref|WP_016879735.1| (hypothetical protein [Chlorogloeopsis fritschii])

HSP 1 Score: 94.7449 bits (234), Expect = 6.599e-19
Identity = 65/213 (30.52%), Postives = 101/213 (47.42%), Query Frame = 0
Query:  124 GPVEGAVVRKSVPELRFEMLKKGLDLTHAF-------QFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
            G  E  + +   P +  E L+KG +LT A         F  AE  +TE+I  F  +               +SNRGN R S  ++ EAL D++++IEL PD  + + NRG A E +               +E AIADY+  L +DP++   Y N G       R + A+  Y++A+AL P    +RG  AL+  E G +   +  +++I R+
Sbjct:   16 GWAEAVMAQSQKPNITQEQLRKGDELTRAAFAATSKGDFATAEKYWTEIIEQFPDN------------PAIWSNRGNSRVSQNKLQEALADFNKAIELAPDITDPYLNRGTALEGLGR-------------WEEAIADYDRILEIDPQDAMAYNNRGTAEVGLERWEDAIADYKKAMALAPNLVIARGNYALVLYETGQIEPAIREMKNIVRK 203          
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|1011334912|ref|WP_062249099.1| (hypothetical protein [Fischerella sp. NIES-3754])

HSP 1 Score: 93.9745 bits (232), Expect = 1.176e-18
Identity = 63/213 (29.58%), Postives = 104/213 (48.83%), Query Frame = 0
Query:  124 GPVEGAVVRKSVPELRFEMLKKGLDL-------THAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
            G  + A+ +   P+   E ++K  +L       T    F +AE  +TE+I  F  +            A  +SNRGN R S  ++ +AL D++++IEL PD A+ + NRG A E +               +E AIADY H L ++P +   Y N G       R + A+  Y++A+A+ P    +RG  AL+  ENG + + +  +++I R+
Sbjct:   15 GWNQAAIAQPQTPKFTPEEIQKWDNLAKSAFAATSKGDFAKAEQYWTEIIERFPDN------------AAIWSNRGNSRVSQNKLPQALADFNKAIELAPDVADPYLNRGTALEGLGR-------------WEEAIADYNHVLEVNPNDAMAYNNRGTAKAGLGRWEEAIADYQKAMAIAPNLVIARGNYALVLYENGKIDQAIREMKNIVRK 202          
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|965689051|dbj|BAU08193.1| (hypothetical protein FIS3754_41350 [Fischerella sp. NIES-3754])

HSP 1 Score: 93.5893 bits (231), Expect = 3.065e-18
Identity = 63/213 (29.58%), Postives = 104/213 (48.83%), Query Frame = 0
Query:  124 GPVEGAVVRKSVPELRFEMLKKGLDL-------THAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
            G  + A+ +   P+   E ++K  +L       T    F +AE  +TE+I  F  +            A  +SNRGN R S  ++ +AL D++++IEL PD A+ + NRG A E +               +E AIADY H L ++P +   Y N G       R + A+  Y++A+A+ P    +RG  AL+  ENG + + +  +++I R+
Sbjct:   61 GWNQAAIAQPQTPKFTPEEIQKWDNLAKSAFAATSKGDFAKAEQYWTEIIERFPDN------------AAIWSNRGNSRVSQNKLPQALADFNKAIELAPDVADPYLNRGTALEGLGR-------------WEEAIADYNHVLEVNPNDAMAYNNRGTAKAGLGRWEEAIADYQKAMAIAPNLVIARGNYALVLYENGKIDQAIREMKNIVRK 248          
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|1121230925|ref|WP_073554773.1| (hypothetical protein [Fischerella major] >gi|1115251939|gb|OKH16443.1| hypothetical protein NIES592_02030 [Fischerella major NIES-592])

HSP 1 Score: 92.0485 bits (227), Expect = 6.198e-18
Identity = 62/213 (29.11%), Postives = 103/213 (48.36%), Query Frame = 0
Query:  124 GPVEGAVVRKSVPELRFEMLKKGLDL-------THAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
            G  + A+ +   P+   E ++K  +L       T    F +AE  +TE+I  F  +            A  +SNRGN R S  ++ +AL D++++IEL PD A+ + NRG A E +               +E AIADY H L ++P +   Y N G       R + A+  Y++A+A+ P    +RG  AL+  E G + + +  +++I R+
Sbjct:   15 GWNQAAIAQPQTPKFTPEEIQKWDNLAKSAFAATSKGDFAKAEQYWTEIIERFPDN------------AAIWSNRGNSRVSQNKLPQALADFNKAIELAPDVADPYLNRGTALEGLGR-------------WEEAIADYNHVLEVNPNDAMAYNNRGTAKAGLGRWEQAIADYQKAMAIAPNLVIARGNYALVLYETGKIDQAIREMKNIVRK 202          
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|493681356|ref|WP_006631530.1| (hypothetical protein [Microcoleus vaginatus] >gi|333461947|gb|EGK90552.1| Tetratricopeptide TPR_1 repeat-containing protein [Microcoleus vaginatus FGP-2])

HSP 1 Score: 92.0485 bits (227), Expect = 6.755e-18
Identity = 59/189 (31.22%), Postives = 91/189 (48.15%), Query Frame = 0
Query:  141 EMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
            E+++K  + T+  +F  AE  +T++I  F S             A A+SNRGN R S  ++  A+ DY R+IEL PD  + + NRG A E +               +E AIADY H L +DP++   Y N G+      + + A+  Y +A  L P    +R   AL   +NG     +  +++I RR
Sbjct:   44 ELVQKAFEATNEGKFPAAETFWTQIIDKFPSQ------------AAAWSNRGNSRVSQNKLQAAISDYERAIELAPDAPDPYLNRGTALEGLGR-------------WEEAIADYNHVLELDPKDPAAYNNRGNAEAGLGKWEQAIADYSKAFELAPEYAFARANHALALYQNGQTKEAIRNMKNIVRR 207          
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|652325934|ref|WP_026723252.1| (hypothetical protein [Fischerella sp. PCC 9431])

HSP 1 Score: 90.8929 bits (224), Expect = 1.727e-17
Identity = 61/213 (28.64%), Postives = 100/213 (46.95%), Query Frame = 0
Query:  124 GPVEGAVVRKSVPELRFEMLKKGLDL-------THAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
            G  E  + +   P    E ++K  +L       T    F +AE  +TE+I  F  +            A  +SNRGN R S  ++ EAL D++++IEL PD  + + NRG A E +               +E AIADY H L +DP++   Y N G         + A+  Y++++A+ P    +RG  AL+  E G + + +  +++I R+
Sbjct:   15 GWSEAVIAQPQTPNFTPEEIQKWDNLAKSAFVATSKGDFAKAEQYWTEIIERFPEN------------AAIWSNRGNSRVSQNKLQEALADFNKAIELAPDVTDPYLNRGTALEALGR-------------WEEAIADYNHILEVDPKDAMAYNNRGTAKAGLGEWEEAIADYQKSMAISPNLVIARGNYALVLYETGQIDKAIREMKNIVRK 202          
The following BLAST results are available for this feature:
BLAST of EWM23342.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104349|gb|EWM23342.1|0.000e+0100.00tetratricopeptide tpr_1 repeat-containing protein ... [more]
gi|553194499|ref|XP_005855971.1|0.000e+0100.00tpr repeat-containing protein [Nannochloropsis gad... [more]
gi|873232409|emb|CEM05563.1|1.697e-3939.79unnamed protein product [Vitrella brassicaformis C... [more]
gi|298705617|emb|CBJ28868.1|2.480e-3443.20conserved unknown protein [Ectocarpus siliculosus][more]
gi|515390322|ref|WP_016879735.1|6.599e-1930.52hypothetical protein [Chlorogloeopsis fritschii][more]
gi|1011334912|ref|WP_062249099.1|1.176e-1829.58hypothetical protein [Fischerella sp. NIES-3754][more]
gi|965689051|dbj|BAU08193.1|3.065e-1829.58hypothetical protein FIS3754_41350 [Fischerella sp... [more]
gi|1121230925|ref|WP_073554773.1|6.198e-1829.11hypothetical protein [Fischerella major] >gi|11152... [more]
gi|493681356|ref|WP_006631530.1|6.755e-1831.22hypothetical protein [Microcoleus vaginatus] >gi|3... [more]
gi|652325934|ref|WP_026723252.1|1.727e-1728.64hypothetical protein [Fischerella sp. PCC 9431][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7351rna7351Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications