EWM23342.1, cds7334 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|585104349|gb|EWM23342.1| (tetratricopeptide tpr_1 repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0 Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0
Query: 1 MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR
Sbjct: 1 MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|553194499|ref|XP_005855971.1| (tpr repeat-containing protein [Nannochloropsis gaditana CCMP526] >gi|422293079|gb|EKU20380.1| tpr repeat-containing protein [Nannochloropsis gaditana CCMP526] >gi|585104348|gb|EWM23341.1| tetratricopeptide tpr_1 repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 677.552 bits (1747), Expect = 0.000e+0 Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0
Query: 1 MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR
Sbjct: 1 MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDPTALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALTMGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|873232409|emb|CEM05563.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 153.295 bits (386), Expect = 1.697e-39 Identity = 76/191 (39.79%), Postives = 126/191 (65.97%), Query Frame = 0
Query: 139 RFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
++ + K GL+ T F F+EAE ++TE+I +++ S++ + ++A+A+++RGN R SL +++AL+DYS +IE PD A++W NR +A E A+ L + + A Q+Y+ A+ DYEHALV+ P + RLY N G++LT D ALE +R+A AL P + A + ++ALL+ + G+V R +++ I RR
Sbjct: 141 QYSLFKAGLEETAKFDFKEAEGIFTEIIDSYETPKAKESERARFMLARAYTDRGNTRVSLGELNKALVDYSCAIEYAPDEADFWLNRAIACEQKAEQSLTSSLQFANQWYKEALEDYEHALVLKPSDPRLYANTGEILTLLEDFDAALEKFRQASALAPSNVAYKARIALLDAQLGDVRRSHFIINDIVRR 331
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|298705617|emb|CBJ28868.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 137.887 bits (346), Expect = 2.480e-34 Identity = 73/169 (43.20%), Postives = 115/169 (68.05%), Query Frame = 0
Query: 137 ELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDS-DYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIAD-ALLATREKD---AFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSP 300
E+++E+ K+G++L F AE +TE+I F+S ++ + + K L+A+A+SNRGN R SL + EA+LDYS SI+L P+ E+W RG+AFE +AD +LA +++ A FYE+A+ADY+HA+V+DP++ R+Y++ GD T + AL+ Y RA+ L PM+P
Sbjct: 149 EMQYELFKRGMELEDDDDFVGAERQWTEIIENFNSPNFRATNPGNKVLLARAYSNRGNTRLSLQKTREAILDYSESIDLVPEKGEFWLARGVAFEDMADRKVLARADRNVEVARTFYESALADYDHAVVLDPQDPRVYISRGDANTLLGQGRDALDNYIRAVNLSPMTP 317
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|515390322|ref|WP_016879735.1| (hypothetical protein [Chlorogloeopsis fritschii]) HSP 1 Score: 94.7449 bits (234), Expect = 6.599e-19 Identity = 65/213 (30.52%), Postives = 101/213 (47.42%), Query Frame = 0
Query: 124 GPVEGAVVRKSVPELRFEMLKKGLDLTHAF-------QFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
G E + + P + E L+KG +LT A F AE +TE+I F + +SNRGN R S ++ EAL D++++IEL PD + + NRG A E + +E AIADY+ L +DP++ Y N G R + A+ Y++A+AL P +RG AL+ E G + + +++I R+
Sbjct: 16 GWAEAVMAQSQKPNITQEQLRKGDELTRAAFAATSKGDFATAEKYWTEIIEQFPDN------------PAIWSNRGNSRVSQNKLQEALADFNKAIELAPDITDPYLNRGTALEGLGR-------------WEEAIADYDRILEIDPQDAMAYNNRGTAEVGLERWEDAIADYKKAMALAPNLVIARGNYALVLYETGQIEPAIREMKNIVRK 203
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|1011334912|ref|WP_062249099.1| (hypothetical protein [Fischerella sp. NIES-3754]) HSP 1 Score: 93.9745 bits (232), Expect = 1.176e-18 Identity = 63/213 (29.58%), Postives = 104/213 (48.83%), Query Frame = 0
Query: 124 GPVEGAVVRKSVPELRFEMLKKGLDL-------THAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
G + A+ + P+ E ++K +L T F +AE +TE+I F + A +SNRGN R S ++ +AL D++++IEL PD A+ + NRG A E + +E AIADY H L ++P + Y N G R + A+ Y++A+A+ P +RG AL+ ENG + + + +++I R+
Sbjct: 15 GWNQAAIAQPQTPKFTPEEIQKWDNLAKSAFAATSKGDFAKAEQYWTEIIERFPDN------------AAIWSNRGNSRVSQNKLPQALADFNKAIELAPDVADPYLNRGTALEGLGR-------------WEEAIADYNHVLEVNPNDAMAYNNRGTAKAGLGRWEEAIADYQKAMAIAPNLVIARGNYALVLYENGKIDQAIREMKNIVRK 202
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|965689051|dbj|BAU08193.1| (hypothetical protein FIS3754_41350 [Fischerella sp. NIES-3754]) HSP 1 Score: 93.5893 bits (231), Expect = 3.065e-18 Identity = 63/213 (29.58%), Postives = 104/213 (48.83%), Query Frame = 0
Query: 124 GPVEGAVVRKSVPELRFEMLKKGLDL-------THAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
G + A+ + P+ E ++K +L T F +AE +TE+I F + A +SNRGN R S ++ +AL D++++IEL PD A+ + NRG A E + +E AIADY H L ++P + Y N G R + A+ Y++A+A+ P +RG AL+ ENG + + + +++I R+
Sbjct: 61 GWNQAAIAQPQTPKFTPEEIQKWDNLAKSAFAATSKGDFAKAEQYWTEIIERFPDN------------AAIWSNRGNSRVSQNKLPQALADFNKAIELAPDVADPYLNRGTALEGLGR-------------WEEAIADYNHVLEVNPNDAMAYNNRGTAKAGLGRWEEAIADYQKAMAIAPNLVIARGNYALVLYENGKIDQAIREMKNIVRK 248
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|1121230925|ref|WP_073554773.1| (hypothetical protein [Fischerella major] >gi|1115251939|gb|OKH16443.1| hypothetical protein NIES592_02030 [Fischerella major NIES-592]) HSP 1 Score: 92.0485 bits (227), Expect = 6.198e-18 Identity = 62/213 (29.11%), Postives = 103/213 (48.36%), Query Frame = 0
Query: 124 GPVEGAVVRKSVPELRFEMLKKGLDL-------THAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
G + A+ + P+ E ++K +L T F +AE +TE+I F + A +SNRGN R S ++ +AL D++++IEL PD A+ + NRG A E + +E AIADY H L ++P + Y N G R + A+ Y++A+A+ P +RG AL+ E G + + + +++I R+
Sbjct: 15 GWNQAAIAQPQTPKFTPEEIQKWDNLAKSAFAATSKGDFAKAEQYWTEIIERFPDN------------AAIWSNRGNSRVSQNKLPQALADFNKAIELAPDVADPYLNRGTALEGLGR-------------WEEAIADYNHVLEVNPNDAMAYNNRGTAKAGLGRWEQAIADYQKAMAIAPNLVIARGNYALVLYETGKIDQAIREMKNIVRK 202
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|493681356|ref|WP_006631530.1| (hypothetical protein [Microcoleus vaginatus] >gi|333461947|gb|EGK90552.1| Tetratricopeptide TPR_1 repeat-containing protein [Microcoleus vaginatus FGP-2]) HSP 1 Score: 92.0485 bits (227), Expect = 6.755e-18 Identity = 59/189 (31.22%), Postives = 91/189 (48.15%), Query Frame = 0
Query: 141 EMLKKGLDLTHAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
E+++K + T+ +F AE +T++I F S A A+SNRGN R S ++ A+ DY R+IEL PD + + NRG A E + +E AIADY H L +DP++ Y N G+ + + A+ Y +A L P +R AL +NG + +++I RR
Sbjct: 44 ELVQKAFEATNEGKFPAAETFWTQIIDKFPSQ------------AAAWSNRGNSRVSQNKLQAAISDYERAIELAPDAPDPYLNRGTALEGLGR-------------WEEAIADYNHVLELDPKDPAAYNNRGNAEAGLGKWEQAIADYSKAFELAPEYAFARANHALALYQNGQTKEAIRNMKNIVRR 207
BLAST of EWM23342.1 vs. NCBI_GenBank
Match: gi|652325934|ref|WP_026723252.1| (hypothetical protein [Fischerella sp. PCC 9431]) HSP 1 Score: 90.8929 bits (224), Expect = 1.727e-17 Identity = 61/213 (28.64%), Postives = 100/213 (46.95%), Query Frame = 0
Query: 124 GPVEGAVVRKSVPELRFEMLKKGLDL-------THAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYETAIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSPASRGKVALLEVENGNVGRGMYMLESINRR 329
G E + + P E ++K +L T F +AE +TE+I F + A +SNRGN R S ++ EAL D++++IEL PD + + NRG A E + +E AIADY H L +DP++ Y N G + A+ Y++++A+ P +RG AL+ E G + + + +++I R+
Sbjct: 15 GWSEAVIAQPQTPNFTPEEIQKWDNLAKSAFVATSKGDFAKAEQYWTEIIERFPEN------------AAIWSNRGNSRVSQNKLQEALADFNKAIELAPDVTDPYLNRGTALEALGR-------------WEEAIADYNHILEVDPKDAMAYNNRGTAKAGLGEWEEAIADYQKSMAISPNLVIARGNYALVLYETGQIDKAIREMKNIVRK 202 The following BLAST results are available for this feature:
BLAST of EWM23342.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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