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Properties
| Property Name | Value |
|---|
| Product | tetratricopeptide tpr_1 repeat-containing protein |
| Orig transcript id | gnl|cribi|Naga_100053g4.5082.mrna |
| Orig protein id | gnl|cribi|Naga_100053g4.5082 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002471.1 | supercontig | CM002471.1:393107..395961 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7351 ID=rna7351|Name=rna7351|organism=Nannochloropsis gaditana|type=mRNA|length=2079bp
ACCGTGATCCTGACGGATCTCACATTTCACACACCTCAGGAAAGTCCGCC
ACAATTATTGCCGCCATTTTCGCCAGGAAGTGCTGAAACTCAAAGACGCG
TCATTCGCTCCCGTGGGCCTTATAACCCTTTGTGGCACGCTAAATAATGC
ACACTCCGAGCCATGTAAAGTTGAGCGTCGCCATATGCGCCATGAGCGTA
CTCTTTCCTGTACAGGATGTGTCGGCTTTCCTGACTCCTGCAGCAAGTGG
GCATCGGAACCCCCCCCTTGCTCCGAGAAGTCCGACGTCAGACCCAACTG
CCTTGGCAGTCAGCACTGAAGGCGACCCTGACCGCTGCAAGATCCGGAAC
GATGTGGAACAGCAATTTAATCGCAAGGATGCCGTGCGCTCCTTGAATGC
ATGGACCCTCGGAGCCACGGCAGGGGCCACTTGGGCGGCATTGACCATGG
GGGGCTCAAGGGCAAACTCTCCAAGTGTCCCCGACTTGGCGCCGATGGCT
GCGTCTTCAAGCGATGGCCCGGTAGAAGGTGCAGTTGTGCGGAAATCAGT
ACCGGAACTGAGGTTTGAAATGCTGAAAAAGGGGTTGGACCTGACGCATG
CGTTTCAGTTCGAAGAGGCGGAGGACGTTTACACAGAGCTGATAGGGCTC
TTCGACAGCGACTACACAAGTTTGAGCGATCAGGAGAAGCAGCTGGTGGC
AAAAGCGTTCTCGAATCGAGGCAATGTCCGCTGCTCCTTGACGCGAGTCA
GCGAGGCGCTGCTAGACTACAGCCGAAGCATTGAGCTGTGTCCTGACACG
GCCGAGTACTGGACAAACCGGGGCTTGGCCTTCGAAGTGATAGCGGACGC
ACTTCTTGCAACACGGGAAAAGGACGCATTCCAATTCTATGAGACGGCCA
TCGCCGACTACGAGCACGCACTGGTCATGGACCCCGAGAACCACCGGCTC
TACCTTAATGCTGGCGACGTGCTCACACGCACCCGTCGGCATGACCTTGC
ATTGGAGTACTATCGCAGAGCCCTTGCCTTGTTTCCCATGTCTCCGGCGA
GTCGCGGCAAGGTGGCGTTGCTGGAGGTGGAGAACGGTAATGTTGGGCGA
GGCATGTACATGCTTGAGTCCATCAATCGACGTAATCCGGACTTTGCGGA
AATGCTTCTTGCATCAGCTGCCTTGGATTGGACTCTCGGCCGATTTGTCG
AAGGCGTGGATTCGTATCGTGAAGCAGTGTCGCGTGATCCGCGACTGTTC
GACGACTCGTACTTAAAGATGGATTGTCACTGGCCTCCGACCATGTTAAA
AATGCTGGACAAGCTCCGAGAAGCTGGCACCATTGAAGGGCTGCGGTCTA
CTGCGGTGTCTTGGTTCGACAGTCGAGGAGACATTATTTGAGTGTCCTAG
ACAAAGTGAAGGCGCTGATTGAGTCACCTTTCCTGATCGGTCTGAAGACG
TTGTTTGGACGTTGTTTGAAGACCATGAATATTGGCAGCTACAGAAACAT
GATTTGCGCAGAATGTAAATATACGCGGGTGCGGAATTCGAAGTGTGATT
ATGTGTAAACGCTTTCTTCAGCGTCAGCTCACCGCTGGCTTAGACTAGCT
ACTTTCTTTCACAGAAAGTATTCGACATGTAACAAGCATGAAAAATGTCT
ATAAGGTCGTGACAATGCAAATGTGTAGTTACCGATATGTTTTTACAAAC
TTCCAGGATTCTTGTATCTCTAATTTTTTTTGCAGATTTTTTTCAAGAAA
CGATCTCAGGCAAAACTTGTGGACAGAATTCTCTTCACGAGAAAAGAAGC
TACCCCGCCGGTGATTTTTTTGAAGAACGAACAAATTTGTCGCCGAGTCC
TTGCTGGAGTTAAGTCGTCCCTGAATAGAGGCCAAACAAAAACTGCGAAA
TGTACATCTGATGTGAAGTAATTATCTGAAATGTAGAAGGCAGCACCAGC
AACCGGGAATGATACGCTTTTGCATTTTAGAGAAATTGTTCGGGTGTTCT
GCTATCAAAATTGCCCTCCTCATGATGTTTCTTTTTTTCCAACAACTAAA
ATGTAAAGAAAAGATTATTGATGCTTTTA back to topprotein sequence of rna7351 >rna7351-protein ID=rna7351-protein|Name=rna7351|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp
MHTPSHVKLSVAICAMSVLFPVQDVSAFLTPAASGHRNPPLAPRSPTSDP
TALAVSTEGDPDRCKIRNDVEQQFNRKDAVRSLNAWTLGATAGATWAALT
MGGSRANSPSVPDLAPMAASSSDGPVEGAVVRKSVPELRFEMLKKGLDLT
HAFQFEEAEDVYTELIGLFDSDYTSLSDQEKQLVAKAFSNRGNVRCSLTR
VSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKDAFQFYET
AIADYEHALVMDPENHRLYLNAGDVLTRTRRHDLALEYYRRALALFPMSP
ASRGKVALLEVENGNVGRGMYMLESINRR back to topmRNA from alignment at CM002471.1:393107..395961- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7351 ID=rna7351|Name=rna7351|organism=Nannochloropsis gaditana|type=mRNA|length=2855bp|location=Sequence derived from alignment at CM002471.1:393107..395961- (Nannochloropsis gaditana)
ACCGTGATCCTGACGGATCTCACATTTCACACACCTCAGGAAAGTCCGCC
ACAATTATTGCCGCCATTTTCGCCAGGAAGTGCTGAAACTCAAAGACGCG
TCATTCGCTCCCGTGGGCCTTATAACCCTTTGTGGCACGCTAAATAATGC
ACACTCCGAGCCATGTAAAGTTGAGCGTCGCCATATGCGCCATGAGCGTA
CTCTTTCCTGTACAGGATGTGTCGGCTTTCCTGACTCCTGCAGCAAGTGG
GCATCGGAACCCCCCCCTTGCTCCGAGAAGTCCGACGTCAGACCCAACTG
CCTTGGCAGTCAGCACTGAAGGCGACCCTGACCGCTGCAAGATCCGGAAC
GATGTGGAACAGCAATTTAATCGCAAGGATGCCGTGCGCTCCTTGAATGC
ATGGACCCTCGGAGCCACGGCAGGGGCCACTTGGGCGGCATTGACCATGG
GGGGCTCAAGGGCAAACTCTCCAAGTGTCCCCGACTTGGCGCCGATGGCT
GCGTCTTCAAGCGATGGCCCGGTAGAAGGTGCAGTTGTGCGGAAATCAGT
ACCGGAACTGAGGTTTGAAATGCTGAAAAAGGGGTTGGACCTGACGCATG
CGTTTCAGTTCGAAGAGGCGGAGGACGTTTACACAGAGCTGATAGGGCTC
TTCGACAGCGACTACACAAGTTTGAGCGATCAGGAGAAGCAGCTGGTGGC
AAAGTACGTAGTAGAAGTCCACGCAAGAGGAGTATAAAGAAGTCGTGCAT
TTAAGGAATGTTCTCAGGCCTGTCGAGTAGGAGCAACGACAGGAGGTGAA
GCACTTGCAGCTATCCTCTTAGGCCAGAAGGAGAGTGTTACAAGGACGCA
CGGTATTGCGCTGCCGGTGGCCAAGAAACTGGATGAGTTTTAAAAACCAC
GCTAATTTCTCATGTATTCTCCATTCGTATGTGCGCAGAGCGTTCTCGAA
TCGAGGCAATGTCCGCTGCTCCTTGACGCGAGTCAGCGAGGCGCTGCTAG
ACTACAGCCGAAGCATTGAGCTGTGTCCTGACACGGCCGAGTACTGGACA
AACCGGGGCTTGGCCTTCGAAGTGATAGGTGAGTAGCTCGTGTGCTTCTT
AGTGTTGACCGGCGTCGCATGCTGTTGCTTTTTCAACTCGAGTGGCTGCT
TGGTCTGACAAGCGAGGTCCCCCCTCCCCAATCAAATACCTCTGGATTCT
TGCCCTTTTTCTACTCTGACGACTGTCATACTTGCGAACAGCGGACGCAC
TTCTTGCAACACGGGAAAAGGACGCATTCCAATTCTATGAGACGGCCATC
GCCGACTACGAGCACGCACTGGTCATGGACCCCGAGAACCACCGGCTCTA
CCTTAATGCTGGCGACGTGCTCACACGCACCCGTCGGCATGACCTTGCAT
TGGAGTACTATCGCAGAGGTATGTGGATAAATTTAAGTTTTAAAATTGTC
CCTTAAAGCGAAACATGCAGGCTTCCTTTGTTCCTGCTTCATTTTCCCCT
TGAGCCATATCATGCCTCCTTCATTTGAACATCTTCAAGCTGATGATTTT
AAGATACATATTATGTGTCATAATACAGCCCTTGCCTTGTTTCCCATGTC
TCCGGCGAGTCGCGGCAAGGTGGCGTTGCTGGAGGTGGAGAACGGTAATG
TTGGGCGAGGCATGTACATGCTTGAGTCCATCAATCGACGGTAAGTCTAA
AACGTAGGCAAAATCGAAAGGAAAAGAAATGGGGTACGCTTTGATTCACA
AAAAAGTTTCTTGTTTGAAAATTACTTAGATGGCCTTGAAGGTGACATAC
CAGTGCGGGAAGAATTTCGATTTTTCATGAATTTAGCATGTGTGCTTTGA
CTGTGATACATGACCTCTAATTGTATTTTATCGGCGCTTCTATCCTCCAT
GTCTGCAGTAATCCGGACTTTGCGGAAATGCTTCTTGCATCAGCTGCCTT
GGATTGGACTCTCGGCCGATTTGTCGAAGGCGTGGATTCGTATCGTGAAG
CAGTGTCGCGTGATCCGCGACTGTTCGACGACTCGTACTTAAAGATGGAT
TGTCACTGGCCTCCGACCATGTTAAAAATGCTGGACAAGCTCCGAGAAGC
TGGCACCATTGAAGGGCTGCGGTCTACTGCGGTGTCTTGGTTCGACAGTC
GAGGAGACATTATTTGAGTGTCCTAGACAAAGTGAAGGCGCTGATTGAGT
CACCTTTCCTGATCGGTCTGAAGACGTTGTTTGGACGTTGTTTGAAGACC
ATGAATATTGGCAGCTACAGAAACATGATTTGCGCAGAATGTAAATATAC
GCGGGTGCGGAATTCGAAGTGTGATTATGTGTAAACGCTTTCTTCAGCGT
CAGCTCACCGCTGGCTTAGACTAGCTACTTTCTTTCACAGAAAGTATTCG
ACATGTAACAAGCATGAAAAATGTCTATAAGGTCGTGACAATGCAAATGT
GTAGTTACCGATATGTTTTTACAAACTTCCAGGATTCTTGTATCTCTAAT
TTTTTTTGCAGATTTTTTTCAAGAAACGATCTCAGGCAAAACTTGTGGAC
AGAATTCTCTTCACGAGAAAAGAAGCTACCCCGCCGGTGATTTTTTTGAA
GAACGAACAAATTTGTCGCCGAGTCCTTGCTGGAGTTAAGTCGTCCCTGA
ATAGAGGCCAAACAAAAACTGCGAAATGTACATCTGATGTGAAGTAATTA
TCTGAAATGTAGAAGGCAGCACCAGCAACCGGGAATGATACGCTTTTGCA
TTTTAGAGAAATTGTTCGGGTGTTCTGCTATCAAAATTGCCCTCCTCATG
ATGTTTCTTTTTTTCCAACAACTAAAATGTAAAGAAAAGATTATTGATGC
TTTTA back to topCoding sequence (CDS) from alignment at CM002471.1:393107..395961- >rna7351 ID=rna7351|Name=rna7351|organism=Nannochloropsis gaditana|type=CDS|length=3960bp|location=Sequence derived from alignment at CM002471.1:393107..395961- (Nannochloropsis gaditana)
CCCTTGCCTTGTTTCCCATGTCTCCGGCGAGTCGCGGCAAGGTGGCGTTG
CTGGAGGTGGAGAACGGTAATGTTGGGCGAGGCATGTACATGCTTGAGTC
CATCAATCGACGGTAACGGACGCACTTCTTGCAACACGGGAAAAGGACGC
ATTCCAATTCTATGAGACGGCCATCGCCGACTACGAGCACGCACTGGTCA
TGGACCCCGAGAACCACCGGCTCTACCTTAATGCTGGCGACGTGCTCACA
CGCACCCGTCGGCATGACCTTGCATTGGAGTACTATCGCAGAGAGCGTTC
TCGAATCGAGGCAATGTCCGCTGCTCCTTGACGCGAGTCAGCGAGGCGCT
GCTAGACTACAGCCGAAGCATTGAGCTGTGTCCTGACACGGCCGAGTACT
GGACAAACCGGGGCTTGGCCTTCGAAGTGATAGATGCACACTCCGAGCCA
TGTAAAGTTGAGCGTCGCCATATGCGCCATGAGCGTACTCTTTCCTGTAC
AGGATGTGTCGGCTTTCCTGACTCCTGCAGCAAGTGGGCATCGGAACCCC
CCCCTTGCTCCGAGAAGTCCGACGTCAGACCCAACTGCCTTGGCAGTCAG
CACTGAAGGCGACCCTGACCGCTGCAAGATCCGGAACGATGTGGAACAGC
AATTTAATCGCAAGGATGCCGTGCGCTCCTTGAATGCATGGACCCTCGGA
GCCACGGCAGGGGCCACTTGGGCGGCATTGACCATGGGGGGCTCAAGGGC
AAACTCTCCAAGTGTCCCCGACTTGGCGCCGATGGCTGCGTCTTCAAGCG
ATGGCCCGGTAGAAGGTGCAGTTGTGCGGAAATCAGTACCGGAACTGAGG
TTTGAAATGCTGAAAAAGGGGTTGGACCTGACGCATGCGTTTCAGTTCGA
AGAGGCGGAGGACGTTTACACAGAGCTGATAGGGCTCTTCGACAGCGACT
ACACAAGTTTGAGCGATCAGGAGAAGCAGCTGGTGGCAAACCCTTGCCTT
GTTTCCCATGTCTCCGGCGAGTCGCGGCAAGGTGGCGTTGCTGGAGGTGG
AGAACGGTAATGTTGGGCGAGGCATGTACATGCTTGAGTCCATCAATCGA
CGGTAACGGACGCACTTCTTGCAACACGGGAAAAGGACGCATTCCAATTC
TATGAGACGGCCATCGCCGACTACGAGCACGCACTGGTCATGGACCCCGA
GAACCACCGGCTCTACCTTAATGCTGGCGACGTGCTCACACGCACCCGTC
GGCATGACCTTGCATTGGAGTACTATCGCAGAGAGCGTTCTCGAATCGAG
GCAATGTCCGCTGCTCCTTGACGCGAGTCAGCGAGGCGCTGCTAGACTAC
AGCCGAAGCATTGAGCTGTGTCCTGACACGGCCGAGTACTGGACAAACCG
GGGCTTGGCCTTCGAAGTGATAGATGCACACTCCGAGCCATGTAAAGTTG
AGCGTCGCCATATGCGCCATGAGCGTACTCTTTCCTGTACAGGATGTGTC
GGCTTTCCTGACTCCTGCAGCAAGTGGGCATCGGAACCCCCCCCTTGCTC
CGAGAAGTCCGACGTCAGACCCAACTGCCTTGGCAGTCAGCACTGAAGGC
GACCCTGACCGCTGCAAGATCCGGAACGATGTGGAACAGCAATTTAATCG
CAAGGATGCCGTGCGCTCCTTGAATGCATGGACCCTCGGAGCCACGGCAG
GGGCCACTTGGGCGGCATTGACCATGGGGGGCTCAAGGGCAAACTCTCCA
AGTGTCCCCGACTTGGCGCCGATGGCTGCGTCTTCAAGCGATGGCCCGGT
AGAAGGTGCAGTTGTGCGGAAATCAGTACCGGAACTGAGGTTTGAAATGC
TGAAAAAGGGGTTGGACCTGACGCATGCGTTTCAGTTCGAAGAGGCGGAG
GACGTTTACACAGAGCTGATAGGGCTCTTCGACAGCGACTACACAAGTTT
GAGCGATCAGGAGAAGCAGCTGGTGGCAAACCCTTGCCTTGTTTCCCATG
TCTCCGGCGAGTCGCGGCAAGGTGGCGTTGCTGGAGGTGGAGAACGGTAA
TGTTGGGCGAGGCATGTACATGCTTGAGTCCATCAATCGACGGTAACGGA
CGCACTTCTTGCAACACGGGAAAAGGACGCATTCCAATTCTATGAGACGG
CCATCGCCGACTACGAGCACGCACTGGTCATGGACCCCGAGAACCACCGG
CTCTACCTTAATGCTGGCGACGTGCTCACACGCACCCGTCGGCATGACCT
TGCATTGGAGTACTATCGCAGAGAGCGTTCTCGAATCGAGGCAATGTCCG
CTGCTCCTTGACGCGAGTCAGCGAGGCGCTGCTAGACTACAGCCGAAGCA
TTGAGCTGTGTCCTGACACGGCCGAGTACTGGACAAACCGGGGCTTGGCC
TTCGAAGTGATAGATGCACACTCCGAGCCATGTAAAGTTGAGCGTCGCCA
TATGCGCCATGAGCGTACTCTTTCCTGTACAGGATGTGTCGGCTTTCCTG
ACTCCTGCAGCAAGTGGGCATCGGAACCCCCCCCTTGCTCCGAGAAGTCC
GACGTCAGACCCAACTGCCTTGGCAGTCAGCACTGAAGGCGACCCTGACC
GCTGCAAGATCCGGAACGATGTGGAACAGCAATTTAATCGCAAGGATGCC
GTGCGCTCCTTGAATGCATGGACCCTCGGAGCCACGGCAGGGGCCACTTG
GGCGGCATTGACCATGGGGGGCTCAAGGGCAAACTCTCCAAGTGTCCCCG
ACTTGGCGCCGATGGCTGCGTCTTCAAGCGATGGCCCGGTAGAAGGTGCA
GTTGTGCGGAAATCAGTACCGGAACTGAGGTTTGAAATGCTGAAAAAGGG
GTTGGACCTGACGCATGCGTTTCAGTTCGAAGAGGCGGAGGACGTTTACA
CAGAGCTGATAGGGCTCTTCGACAGCGACTACACAAGTTTGAGCGATCAG
GAGAAGCAGCTGGTGGCAAACCCTTGCCTTGTTTCCCATGTCTCCGGCGA
GTCGCGGCAAGGTGGCGTTGCTGGAGGTGGAGAACGGTAATGTTGGGCGA
GGCATGTACATGCTTGAGTCCATCAATCGACGGTAACGGACGCACTTCTT
GCAACACGGGAAAAGGACGCATTCCAATTCTATGAGACGGCCATCGCCGA
CTACGAGCACGCACTGGTCATGGACCCCGAGAACCACCGGCTCTACCTTA
ATGCTGGCGACGTGCTCACACGCACCCGTCGGCATGACCTTGCATTGGAG
TACTATCGCAGAGAGCGTTCTCGAATCGAGGCAATGTCCGCTGCTCCTTG
ACGCGAGTCAGCGAGGCGCTGCTAGACTACAGCCGAAGCATTGAGCTGTG
TCCTGACACGGCCGAGTACTGGACAAACCGGGGCTTGGCCTTCGAAGTGA
TAGATGCACACTCCGAGCCATGTAAAGTTGAGCGTCGCCATATGCGCCAT
GAGCGTACTCTTTCCTGTACAGGATGTGTCGGCTTTCCTGACTCCTGCAG
CAAGTGGGCATCGGAACCCCCCCCTTGCTCCGAGAAGTCCGACGTCAGAC
CCAACTGCCTTGGCAGTCAGCACTGAAGGCGACCCTGACCGCTGCAAGAT
CCGGAACGATGTGGAACAGCAATTTAATCGCAAGGATGCCGTGCGCTCCT
TGAATGCATGGACCCTCGGAGCCACGGCAGGGGCCACTTGGGCGGCATTG
ACCATGGGGGGCTCAAGGGCAAACTCTCCAAGTGTCCCCGACTTGGCGCC
GATGGCTGCGTCTTCAAGCGATGGCCCGGTAGAAGGTGCAGTTGTGCGGA
AATCAGTACCGGAACTGAGGTTTGAAATGCTGAAAAAGGGGTTGGACCTG
ACGCATGCGTTTCAGTTCGAAGAGGCGGAGGACGTTTACACAGAGCTGAT
AGGGCTCTTCGACAGCGACTACACAAGTTTGAGCGATCAGGAGAAGCAGC
TGGTGGCAAA back to top
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