EWM23305.1, cds7332 (CDS) Nannochloropsis gaditana

Overview
NameEWM23305.1
Unique Namecds7332
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:391918..392910 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23305.1
ProductSNARE associated Golgi protein
Orig transcript idgnl|cribi|Naga_100053g2.5045.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:391918..392910 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|585104312|gb|EWM23305.1| (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MDHPGNEDNVISSNGTSAASDDANAPSDQIKQKPGYYSFPQLKSEPPTKSWTSKARIWIFILFLVTFAVLSATVLRQPIMDSERWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIFKAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKEAEMSAVQSVAAGCADVESAQEDGNTPPEAEEEILFNTKDLATSSIAASTPAVA 330
            MDHPGNEDNVISSNGTSAASDDANAPSDQIKQKPGYYSFPQLKSEPPTKSWTSKARIWIFILFLVTFAVLSATVLRQPIMDSERWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIFKAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKEAEMSAVQSVAAGCADVESAQEDGNTPPEAEEEILFNTKDLATSSIAASTPAVA
Sbjct:    1 MDHPGNEDNVISSNGTSAASDDANAPSDQIKQKPGYYSFPQLKSEPPTKSWTSKARIWIFILFLVTFAVLSATVLRQPIMDSERWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIFKAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKEAEMSAVQSVAAGCADVESAQEDGNTPPEAEEEILFNTKDLATSSIAASTPAVA 330          
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|953502243|emb|CEG36628.1| (atp-binding cassette superfamily [Plasmopara halstedii])

HSP 1 Score: 75.0998 bits (183), Expect = 7.994e-12
Identity = 53/202 (26.24%), Postives = 102/202 (50.50%), Query Frame = 0
Query:   84 RWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIF------KAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKEAE 279
            +WL+     G  +Y      F+++   + + +L++G+++G   GL +A   KLL ++ +Y+ GRY+ R  + +Y  + +  L     L+ +R      L R+A  P A+K+YGL  ++     +F+ A++   P S+I    G  +++   +       +  +EG  IL +VG     L+L    ++ RKYV E+  E++ E
Sbjct:   67 QWLQVHEALGAALYVCSFTCFVVLCFPSTVFELLAGYIFGLWLGLLLATTGKLLGSVLSYVIGRYMCRHRVHSYMARGHPALQGFQSLLRKRQILIVFLTRVAFFPIAIKNYGLSVLDVRFSVYFAAALLTGLPFSFIWVYSGHAVENVAALLVSPTASRHSTEG--ILLLVGAGSALLLLFMVGYYSRKYVLELAKEEQDE 266          
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|1214673528|gb|OWY96302.1| (ABC transporter [Phytophthora megakarya])

HSP 1 Score: 73.9442 bits (180), Expect = 2.145e-11
Identity = 54/201 (26.87%), Postives = 97/201 (48.26%), Query Frame = 0
Query:   84 RWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLS--WILT-----DLGAKLQDPKDIFKAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKE 277
            RWL+     G  +Y      F+++   +   +L++G+++G   GL +A + KL+ ++ +Y  GRYL R  + TY  + +  L    RL+ +R      L R+A  P AVK+YGL  ++     +F+ A++   P S  W+ +     +  A L  P     ++     +L ++G     L+L     + RKYV E+  E+ 
Sbjct:   61 RWLQTHEAIGAALYVSCFTCFVVLCFPSTAFELLAGYIFGFWLGLLLASMGKLVGSMISYGIGRYLCRRRVHTYMARGHPTLQGFQRLLRKRQILVVFLTRVAFFPIAVKNYGLSVLDVRFPVYFAAALLTGLPFSVIWVYSGHAVENFSALLASPAT---SRHSTEMVLLLIGTGSALLLLFVVGIYTRKYVLELAQEEN 258          
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|673030216|ref|XP_008869069.1| (hypothetical protein H310_05973 [Aphanomyces invadans] >gi|574475464|gb|ETW02464.1| hypothetical protein H310_05973 [Aphanomyces invadans])

HSP 1 Score: 73.1738 bits (178), Expect = 3.566e-11
Identity = 67/268 (25.00%), Postives = 121/268 (45.15%), Query Frame = 0
Query:   20 SDDANAPSDQIKQKPGYYSFPQLKSEPPTKSWTSKARIWIFILFLVTFAV----LSATVLRQPIMDSERWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIFKAKSE------GSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKE 277
             DDANA       +  Y S P  +   P +S    + +   IL +V   V    L A    Q   +  RW +   + G ++Y +   A +++   + + DL++G+++G   G A+A   K L ++ A+L GRY+  D +     +    L A   L+E    Q  +L++ A IP  +K+YGL     P   F    +VI    +W+   +G       +I  + +         ++L IV +    L+ V G++  ++Y+ E+ A++E
Sbjct:    6 GDDANAV------RLTYQSIPMGERAAPKESSPRTSHVLAGILAVVFCVVVILSLWAFAQTQAFRELVRWEQDHQVLGGLIYVLFYAACVVLCCPSTIFDLLAGYIFGFGFGTAVAMGGKTLGSVVAFLLGRYVMHDTIRRKLTEGPPVLRAWALLLERNELQFVLLLQFAYIPIFLKNYGLAVAGVPFGLFLWTNVVIGGARTWLAVYIGHSTAHITEILTSHAARGDARVAQEVLMIVAVVSTLLLFVVGSYRTKQYLDEL-ADRE 266          
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|970642700|gb|KUF84275.1| (ABC transporter G family member 35 [Phytophthora nicotianae])

HSP 1 Score: 74.7146 bits (182), Expect = 5.411e-11
Identity = 51/198 (25.76%), Postives = 97/198 (48.99%), Query Frame = 0
Query:   84 RWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIF----KAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKE 277
            +WL+     G  +Y      F+++   +   +L++G+++G   GL +A   KL+ ++ +Y+ GRYL R  +  Y  + +  L     L+ +R      L R+A  P AVK+YGL  ++     +F+ A++   P S+I    G  +++   +      A+     IL +VG     L+L    ++ RKYV ++  E++
Sbjct:   61 QWLQTHETLGAALYVCSFTCFVVLCFPSTAFELLAGYIFGLWLGLLLATTGKLVGSVLSYVIGRYLCRRRVHAYMAQGHPALQGFQSLLRKRQILVVFLTRVAFFPIAVKNYGLSVLDVRFPVYFAAALLTGLPFSFIWVYSGHAVENFTALLASPTAARHSTEMILLLVGAGSALLLLFVVGFYTRKYVLDLAEEEK 258          
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|970636211|gb|KUF80926.1| (prenyltransferase alpha subunit repeat-containing protein 1 protein [Phytophthora nicotianae])

HSP 1 Score: 73.9442 bits (180), Expect = 8.870e-11
Identity = 51/198 (25.76%), Postives = 97/198 (48.99%), Query Frame = 0
Query:   84 RWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIF----KAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKE 277
            +WL+     G  +Y      F+++   +   +L++G+++G   GL +A   KL+ ++ +Y+ GRYL R  +  Y  + +  L     L+ +R      L R+A  P AVK+YGL  ++     +F+ A++   P S+I    G  +++   +      A+     IL +VG     L+L    ++ RKYV ++  E++
Sbjct:   61 QWLQTHETLGAALYVCSFTCFVVLCFPSTAFELLAGYIFGLWLGLLLATTGKLVGSVLSYVIGRYLCRRRVHAYMAQGHPALQGFQSLLRKRQILVVFLTRVAFFPIAVKNYGLSVLDVRFPVYFAAALLTGLPFSFIWVYSGHAVENFTALLASPTAARHSTEMILLLVGAGSALLLLFVVGFYTRKYVLDLAEEEK 258          
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|698787684|ref|XP_009826874.1| (hypothetical protein H257_04171 [Aphanomyces astaci] >gi|574117963|gb|ETV83444.1| hypothetical protein H257_04171 [Aphanomyces astaci])

HSP 1 Score: 71.633 bits (174), Expect = 1.183e-10
Identity = 59/256 (23.05%), Postives = 117/256 (45.70%), Query Frame = 0
Query:   30 IKQKPGYYSFP---QLKSEPPTKSWTSKARIWIFILFLVTFAVLSATVLRQPIMDSERWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIFKAKSE------GSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEK 276
            + + P Y S P   +   EP ++            L LV    L A    Q   D  RW +   ++G ++Y ++  A +++   + ++DL++G+++G   G A+A   + L ++ A+L GRY+ +D +          L A   L+E    Q  VL++ A IP  VK+YGL A+ +     F    V+    + +   +G       ++ K+ +         ++L +V +    L++  G++  ++Y+ E+ A +
Sbjct:    1 MGEHPTYDSIPMAVESSKEPSSRCSNVLVSTVAGALCLVVVVGLWAFTQTQTFRDLVRWEQTHQVSGGLIYVLIYAACVILCCPSTVLDLLAGYIFGFGVGTAVAVGGRTLGSVAAFLLGRYVMQDTVRQKLHDGQPMLRAWALLLERNEIQFVVLVQFAYIPLFVKNYGL-ALLNVSFGLFLWTHVVCGVRTLLTVYIGHSATHMTELLKSHAASGDTVIAQEMLMVVAVVSTLLLVAVGSYRTKQYLDELAASE 255          
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|675207319|ref|XP_008912544.1| (hypothetical protein PPTG_16793 [Phytophthora parasitica INRA-310] >gi|566013846|gb|ETI36757.1| hypothetical protein F443_17187 [Phytophthora parasitica P1569] >gi|567951248|gb|ETK76951.1| hypothetical protein L915_16727 [Phytophthora parasitica] >gi|567979907|gb|ETL30379.1| hypothetical protein L916_16636 [Phytophthora parasitica] >gi|568009408|gb|ETL83611.1| hypothetical protein L917_16456 [Phytophthora parasitica] >gi|568039318|gb|ETM36814.1| hypothetical protein L914_16562 [Phytophthora parasitica] >gi|568087287|gb|ETN02161.1| hypothetical protein PPTG_16793 [Phytophthora parasitica INRA-310] >gi|570317508|gb|ETO65456.1| hypothetical protein F444_17228 [Phytophthora parasitica P1976] >gi|570941298|gb|ETP06555.1| hypothetical protein F441_17060 [Phytophthora parasitica CJ01A1] >gi|570971530|gb|ETP34649.1| hypothetical protein F442_17061 [Phytophthora parasitica P10297] >gi|970654070|gb|KUF92436.1| hypothetical protein AM588_10004053 [Phytophthora nicotianae])

HSP 1 Score: 71.633 bits (174), Expect = 1.363e-10
Identity = 51/198 (25.76%), Postives = 97/198 (48.99%), Query Frame = 0
Query:   84 RWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIF----KAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKE 277
            +WL+     G  +Y      F+++   +   +L++G+++G   GL +A   KL+ ++ +Y+ GRYL R  +  Y  + +  L     L+ +R      L R+A  P AVK+YGL  ++     +F+ A++   P S+I    G  +++   +      A+     IL +VG     L+L    ++ RKYV ++  E++
Sbjct:   61 QWLQTHETLGAALYVCSFTCFVVLCFPSTAFELLAGYIFGLWLGLLLATTGKLVGSVLSYVIGRYLCRRRVHAYMAQGHPALQGFQSLLRKRQILVVFLTRVAFFPIAVKNYGLSVLDVRFPVYFAAALLTGLPFSFIWVYSGHAVENFTALLASPTAARHSTEMILLLVGAGSALLLLFVVGFYTRKYVLDLAEEEK 258          
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|301101692|ref|XP_002899934.1| (ATP-binding Cassette (ABC) superfamily [Phytophthora infestans T30-4] >gi|262102509|gb|EEY60561.1| ATP-binding Cassette (ABC) superfamily [Phytophthora infestans T30-4])

HSP 1 Score: 70.8626 bits (172), Expect = 2.306e-10
Identity = 51/207 (24.64%), Postives = 101/207 (48.79%), Query Frame = 0
Query:   84 RWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIF----KAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREI-KAEKEAEMSAVQS 285
             WL+     G  +Y      F+++   +   +L++G+++G   GL +A   KL+ ++ +Y+ GRYL R  +  Y  + +  L     L+ +R      L R+A  P A+K+YGL  ++     +F+ A++   P S+I    G  +++   +      ++     +L +VG     L+L     + RKYV ++ + EK+A+ +A  +
Sbjct:   61 HWLQTHETIGAALYVCSFTCFVVLCFPSTAFELLAGYIFGLWLGLLLATTGKLVGSVLSYVIGRYLCRRRVHAYMAQGHPALQGFQSLLRKRQILVVFLTRVAFFPIAIKNYGLSVLDVRFPVYFAAALLTGLPFSFIWVYSGHAVENFTALLASPAASRHSTEMVLLLVGAGSALLLLFVVGLYTRKYVLDLAEEEKDADTTAADT 267          
BLAST of EWM23305.1 vs. NCBI_GenBank
Match: gi|695412349|ref|XP_009525716.1| (hypothetical protein PHYSODRAFT_360349 [Phytophthora sojae] >gi|348676841|gb|EGZ16658.1| hypothetical protein PHYSODRAFT_360349 [Phytophthora sojae])

HSP 1 Score: 69.3218 bits (168), Expect = 9.009e-10
Identity = 54/203 (26.60%), Postives = 95/203 (46.80%), Query Frame = 0
Query:   84 RWLKRQGLNGLVVYGIVSWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLFRDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAIEDPPIPFFSCAIVIMAPLS--WILT-----DLGAKLQDPKDIFKAKSEGSQILEIVGITCIFLVLVCGAWFGRKYVREIKAEKEAE 279
            RWL+     G  +Y      F+++   +   +L++G+++G   GL +A   KL+ ++ +Y  GRYL R  +  Y  + +  L     L+ +R      L R+A  P AVK+YGL  ++     FF+ A++   P S  W+ +     +  A L  P     ++     +L +VG     L+L     + RKYV  +  E++ E
Sbjct:   65 RWLQTHEALGAALYVGSFTGFVVLCFPSTAFELLAGYIFGFWLGLLLATAGKLVGSVLSYAIGRYLCRRRVHAYMARGHPALQGFQSLLRKRQVLVVFLTRVAFFPIAVKNYGLSVLDVQFPVFFAAALLTGLPFSVIWVYSGHAVENFTALLASPT---ASRHSTEMVLLLVGAGSALLLLAVVGIYTRKYVLGLAEEEKRE 264          
The following BLAST results are available for this feature:
BLAST of EWM23305.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104312|gb|EWM23305.1|0.000e+0100.00SNARE associated Golgi protein [Nannochloropsis ga... [more]
gi|953502243|emb|CEG36628.1|7.994e-1226.24atp-binding cassette superfamily [Plasmopara halst... [more]
gi|1214673528|gb|OWY96302.1|2.145e-1126.87ABC transporter [Phytophthora megakarya][more]
gi|673030216|ref|XP_008869069.1|3.566e-1125.00hypothetical protein H310_05973 [Aphanomyces invad... [more]
gi|970642700|gb|KUF84275.1|5.411e-1125.76ABC transporter G family member 35 [Phytophthora n... [more]
gi|970636211|gb|KUF80926.1|8.870e-1125.76prenyltransferase alpha subunit repeat-containing ... [more]
gi|698787684|ref|XP_009826874.1|1.183e-1023.05hypothetical protein H257_04171 [Aphanomyces astac... [more]
gi|675207319|ref|XP_008912544.1|1.363e-1025.76hypothetical protein PPTG_16793 [Phytophthora para... [more]
gi|301101692|ref|XP_002899934.1|2.306e-1024.64ATP-binding Cassette (ABC) superfamily [Phytophtho... [more]
gi|695412349|ref|XP_009525716.1|9.009e-1026.60hypothetical protein PHYSODRAFT_360349 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7349rna7349Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications