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Properties
| Property Name | Value |
|---|
| Product | SNARE associated Golgi protein |
| Orig transcript id | gnl|cribi|Naga_100053g2.5045.mrna |
| Orig protein id | gnl|cribi|Naga_100053g2.5045 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002471.1 | supercontig | CM002471.1:391761..394213 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7349 ID=rna7349|Name=rna7349|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp
GTTTGAGGACCTATCGTTCTCCTCATCCATTTCCCTACAGAGGCTGTCAC
TTTCTGCGGATCCCTCTTTCGACATACAAGCCCCGAACCTCCCCATCCGC
GTGCTCACTCCTTCCCTTGTGCTGGAAAAATGCTGCCCCTTTCGTCCTTC
ATCTCTTCCTCTTCAATGCTAATAGCCAGGCGAAAAAGAATACCTTCTTC
GCGAAGTCACTTAGATGATCATTCATCCAAACGCTTTAGATGCCCACGCT
ACCTCCCTGCTGCGCCTCCTCTCCCGTCCCCCTCGGTACTTTCTGAGGTT
CATTCCCAAAAAAATTCACAGACATCCGACACAATTATCGAACTCCGAAA
TGCATTTGCACGCCAGCAAGAACTTGATGAAAAAAGGCAAGGCATAGAGG
TGCGTCTCGCCGATCCCTCCATGTGCTCTCTTGTCACACGAGCACTACGT
GAAACTGTGGTTCGCTCCCTCCTGAGGGACCGTGAAAAGGCCCGCGCATG
CATGAAAAACCTCATGTTTGGAATCGATGGTGAGATTGTAGCTGCGCTGA
CGCAGCTGAGTATGGTGCAAAGCTCGCAACAAGAGCTCCTTCAACGGTGT
GAAGACGTCTTGGCTTTTGAACCCTTGGTCTCTAAATTGGAGACCTATGC
CCGTGACCGTAACTTCCCTCAAGACTGTACGTCGTACTGTCTTGATCTAG
GTATTGACTCTTGGGTGCGCATTAAAAGCACTCAGATCATCGTTTCTCTG
GGGGACTCTCCTCTGTTTCAACATTTTGATGGTTGCTCTTTCAACGTCAC
TCGCACTCTTCGTCTGGCACACCTTTCTCCCACAATGACGGGCCCAACTT
TATTCAATTTATTTCAACCTGTAGCTGTTAGTGTAATCAGTGCTGAGTTC
CAGAAATCTAAAATACCGGAGATGCAGGTGGTGGTCGAAGTTGGAGGCGA
TCCGGAAGAGCATGTTGATGCGCTTGTGGGACAAAGCAAACTATGTGAGC
GAAATAAAGGGTTCAGGGTGATTTGCTACGGCTATCGCACATACATGCCG
AAAGACAGTTTCTGTAATTGTGATGAGCCTTGCAAGACCTGGGCATGTAG
CTTACCACCATCCTGCCAGCGAACTGCATGTCGACATTTGGTAGGCATGA
TAATTCCCATATCGCGAACTGCCACCATGGATTCCCAATGTAGATCCTTG
GAGATTATGTTCTCGATTGTGACTTGAATCATCACCAACGAGGTCACTGT
AAGCGTGACAATACTAGGAAAACCCCCAAAAAACTGATCGTGAATGATAA
CAAAAGCACCAAAGAATCTGTGCCACATTTTC back to topprotein sequence of rna7349 >rna7349-protein ID=rna7349-protein|Name=rna7349|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MDHPGNEDNVISSNGTSAASDDANAPSDQIKQKPGYYSFPQLKSEPPTKS
WTSKARIWIFILFLVTFAVLSATVLRQPIMDSERWLKRQGLNGLVVYGIV
SWAFLMIGGSANLIDLISGFVYGSRQGLAMAYVVKLLATICAYLAGRYLF
RDLLVTYFFKEYVWLAAMVRLVEERPWQSNVLIRLAAIPAAVKSYGLGAI
EDPPIPFFSCAIVIMAPLSWILTDLGAKLQDPKDIFKAKSEGSQILEIVG
ITCIFLVLVCGAWFGRKYVREIKAEKEAEMSAVQSVAAGCADVESAQEDG
NTPPEAEEEILFNTKDLATSSIAASTPAVA back to topmRNA from alignment at CM002471.1:391761..394213+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7349 ID=rna7349|Name=rna7349|organism=Nannochloropsis gaditana|type=mRNA|length=2453bp|location=Sequence derived from alignment at CM002471.1:391761..394213+ (Nannochloropsis gaditana)
GAACCGGGGAGCGAACCGACACTCCTCGAACACGAAGAGAACGCACCGAT
CCTATTGCAAAGCTTTGCGCGTAAAACCCAAATGAAGTGCATGATCCTCG
AATCTGACTTATTCCCATTTTCGCACGATCTAAAATTTTGGCTGACTTAT
AAGAGTTATGGACCACCCAGGAAATGAGGATAATGTTATATCGTCCAACG
GAACTTCTGCGGCAAGCGACGATGCGAATGCGCCCAGCGACCAAATTAAA
CAGAAGCCCGGCTACTATTCCTTTCCACAGCTAAAATCTGAACCCCCCAC
AAAATCTTGGACTTCTAAAGCGCGAATATGGATCTTTATCCTCTTCTTGG
TAACGTTTGCTGTCCTCAGTGCGACTGTACTTCGCCAACCTATCATGGAC
AGCGAGAGATGGCTTAAAAGGCAGGGTCTAAATGGATTAGTAGTCTATGG
TATCGTAAGTTGGGCGTTCCTTATGATCGGTGGAAGCGCAAACCTGATCG
ACTTGATAAGCGGCTTCGTTTATGGCTCGAGACAGGGCCTCGCCATGGCG
TACGTTGTAAAACTTCTAGCCACAATCTGTGCTTATCTGGCTGGCCGATA
CCTTTTCCGAGATCTGCTTGTGACATACTTTTTTAAAGAGTATGTGTGGC
TCGCTGCGATGGTTAGACTTGTAGAAGAAAGACCTTGGCAAAGTAATGTA
TTAATACGATTGGCTGCAATTCCGGCAGCCGTGAAAAGCTACGGTTTGGG
CGCAATTGAAGACCCACCAAtacccttcttttcttgtgcTATCGTAATAA
TGGCACCTCTGTCTTGGATTTTGACGGATTTGGGAGCTAAGCTTCAGGAC
CCCAAGGATATATTTAAGGCCAAAAGCGAGGGTTCACAAATTTTGGAGAT
CGTTGGCATTACATGTATCTTTCTGGTCCTAGTGTGTGGCGCTTGGTTCG
GCCGCAAATATGTTCGTGAAATTAaagcagagaaagaagcagaAATGTCT
GCGGTACAATCTGTCGCAGCTGGTTGTGCAGATGTTGAATCCGcgcagga
ggacggcaaTACACCAcctgaggcggaggaagaaatctTATTTAACACAA
AGGACCTTGCGACGTCATCCATCGCGGCGAGCACGCCAGCGGTAGCGTAA
GTAGGATCCTAGCTGAACTGTAATGCAAGACTAAGAAAATTGGGATACTG
GTCCATGGTACATTCAGAATGAAAGACGCCCACGAGCCATGAACAAAAAT
AAATGAGGAAGTAAATTGGCGAGTGGAAATCCAGTATGCGCAAAGCATTT
TCAGAGTCcaaggagagaaagcaaATACCATTGGAGAAATAAAGTTTAAA
AGCATCAATAATCTTTTCTTTACATTTTAGTTgttggaaaaaaagaaaca
tCATGAGGAGGGCAATTTTGATAGCAGAACACCCGAACAATTTCTCTAAA
ATGCAAAAGCGTATCATTCCCggttgctggtgctgcctTCTACATTTCAG
ATAATTACTTCACATCAGATGTACATTTCGCAGTTTTTGTTTGGCCTCTA
TTCAGGGACGACTTAACTCCAGCAAGGACTCGGCGACAAATTTGTTCGTT
CTTCAAAAAAATCACCGGCGGGGTAGCTTCTTTTCTCGTGAAGAGAATTC
TGTCCACAAGTTTTGCCTGAGATCGTTTCTTGAAAAAAATCTGCAAAAAA
AATTAGAGATACAAGAATCCTGGAAGTTTGTAAAAACATATCGGTAACTA
CACATTTGCATTGTCACGACCTTATAGACATTTTTCATGCTTGTTACATG
TCGAATACTTTCTGTGAAAGAAAGTAGCTAGTCTAAGCCAGCGGTGAGCT
GACGCTGAAGAAAGCGTTTACACATAATCACACTTCGAATTCCGCACCCG
CGTATATTTACATTCTGCGCAAATCATGTTTCTGTAGCTGCCAATATTCA
TGGTCTTCAAACAACGTCCAAACAACGTCTTCAGACCGATCAGGAAAGGT
GACTCAATCAGCGCCTTCACTTTGTCTAGGACACTCAAATAATGTCTCCT
CGACTGTCGAACCAAGACACCGCAGTAGACCGCAGCCCTTCAATGGTGCC
AGCTTCTCGGAGCTTGTCCAGCATTTTTAACATGGTCGGAGGCCAGTGAC
AATCCATCTTTAAGTACGAGTCGTCGAACAGTCGCGGATCACGCGACACT
GCTTCACGATACGAATCCACGCCTTCGACAAATCGGCCGAGAGTCCAATC
CAAGGCAGCTGATGCAAGAAGCATTTCCGCAAAGTCCGGATTACTGCAGA
CATGGAGGATAGAAGCGCCGATAAAATACAATTAGAGGTCATGTATCACA
GTCAAAGCACACATGCTAAATTCATGAAAAATCGAAATTCTTCCCGCACT
GGTATGTCACCTTCAAGGCCATCTAAGTAATTTTCAAACAAGAAACTTTT
TTG back to topCoding sequence (CDS) from alignment at CM002471.1:391761..394213+ >rna7349 ID=rna7349|Name=rna7349|organism=Nannochloropsis gaditana|type=CDS|length=993bp|location=Sequence derived from alignment at CM002471.1:391761..394213+ (Nannochloropsis gaditana)
ATGGACCACCCAGGAAATGAGGATAATGTTATATCGTCCAACGGAACTTC
TGCGGCAAGCGACGATGCGAATGCGCCCAGCGACCAAATTAAACAGAAGC
CCGGCTACTATTCCTTTCCACAGCTAAAATCTGAACCCCCCACAAAATCT
TGGACTTCTAAAGCGCGAATATGGATCTTTATCCTCTTCTTGGTAACGTT
TGCTGTCCTCAGTGCGACTGTACTTCGCCAACCTATCATGGACAGCGAGA
GATGGCTTAAAAGGCAGGGTCTAAATGGATTAGTAGTCTATGGTATCGTA
AGTTGGGCGTTCCTTATGATCGGTGGAAGCGCAAACCTGATCGACTTGAT
AAGCGGCTTCGTTTATGGCTCGAGACAGGGCCTCGCCATGGCGTACGTTG
TAAAACTTCTAGCCACAATCTGTGCTTATCTGGCTGGCCGATACCTTTTC
CGAGATCTGCTTGTGACATACTTTTTTAAAGAGTATGTGTGGCTCGCTGC
GATGGTTAGACTTGTAGAAGAAAGACCTTGGCAAAGTAATGTATTAATAC
GATTGGCTGCAATTCCGGCAGCCGTGAAAAGCTACGGTTTGGGCGCAATT
GAAGACCCACCAAtacccttcttttcttgtgcTATCGTAATAATGGCACC
TCTGTCTTGGATTTTGACGGATTTGGGAGCTAAGCTTCAGGACCCCAAGG
ATATATTTAAGGCCAAAAGCGAGGGTTCACAAATTTTGGAGATCGTTGGC
ATTACATGTATCTTTCTGGTCCTAGTGTGTGGCGCTTGGTTCGGCCGCAA
ATATGTTCGTGAAATTAaagcagagaaagaagcagaAATGTCTGCGGTAC
AATCTGTCGCAGCTGGTTGTGCAGATGTTGAATCCGcgcaggaggacggc
aaTACACCAcctgaggcggaggaagaaatctTATTTAACACAAAGGACCT
TGCGACGTCATCCATCGCGGCGAGCACGCCAGCGGTAGCGTAA back to top
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