EWM23348.1, cds7306 (CDS) Nannochloropsis gaditana

Overview
NameEWM23348.1
Unique Namecds7306
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:329929..329985 +
Alignment locationCM002471.1:330087..331160 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23348.1
ProductOxoglutarate/iron-dependent oxygenase
Orig transcript idgnl|cribi|Naga_100057g27.3907.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:329929..329985 +
CM002471.1supercontigCM002471.1:330087..331160 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR027450AlkB-like
Homology
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|585104356|gb|EWM23348.1| (Oxoglutarate/iron-dependent oxygenase [Nannochloropsis gaditana])

HSP 1 Score: 771.926 bits (1992), Expect = 0.000e+0
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0
Query:    1 MLLVRLLWLMLEELAIIRPDSWIAQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANNSAVTARRRVEGDPGRDTGDSRAGRVLAQGVQGERATSKCARKMGGEEKVGQGEETPIGMEEVARMVEEMVLKEEEKEACRAPPLSRDEGRAARLIARGTAGKGEGRGGDEGGDAAGQQTSNGSDGKGELSATKSAGQTSRRPRRGGRVQHSWAG 376
            MLLVRLLWLMLEELAIIRPDSWIAQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANNSAVTARRRVEGDPGRDTGDSRAGRVLAQGVQGERATSKCARKMGGEEKVGQGEETPIGMEEVARMVEEMVLKEEEKEACRAPPLSRDEGRAARLIARGTAGKGEGRGGDEGGDAAGQQTSNGSDGKGELSATKSAGQTSRRPRRGGRVQHSWAG
Sbjct:    1 MLLVRLLWLMLEELAIIRPDSWIAQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANNSAVTARRRVEGDPGRDTGDSRAGRVLAQGVQGERATSKCARKMGGEEKVGQGEETPIGMEEVARMVEEMVLKEEEKEACRAPPLSRDEGRAARLIARGTAGKGEGRGGDEGGDAAGQQTSNGSDGKGELSATKSAGQTSRRPRRGGRVQHSWAG 376          
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|1199288644|gb|OUS43780.1| (hypothetical protein BE221DRAFT_78619 [Ostreococcus tauri])

HSP 1 Score: 252.677 bits (644), Expect = 1.782e-77
Identity = 123/242 (50.83%), Postives = 163/242 (67.36%), Query Frame = 0
Query:   24 AQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANNSAVTARRRVEGDPGRDTGDSRAGRVLAQGVQGERATSKCARKM 265
            A  DG+LLAD    L G  +YLP F CG KD+++L +L  +++  +   R E G  MV+WS+HLK ENP+FS TF+ V+ ++  YFDVE+ ATR+NFYRDG+D+KPFHHDSHAYG   ++EDFT+G SFG +REL F HE SG TF+FPQ NGDVFAF S+VN+ F HGVP+ K  ++   PRFSIIAWGRRRT+N+ N A +     + D  +    + A +   + V G    S+  RK 
Sbjct:   40 AMVDGRLLADFEAVLSGNAIYLPSFHCGSKDYAVLASLAAEMERAV---RAESGG-MVNWSKHLKHENPEFSETFHRVVKEMADYFDVEVYATRMNFYRDGTDWKPFHHDSHAYGGRAQREDFTMGASFGGSRELIFLHEPSGNTFTFPQNNGDVFAFTSEVNKRFKHGVPKAKSNND---PRFSIIAWGRRRTINSRNGAASNESSEKSDQTK--ASTEATKSHNELVTGNGEVSQLIRKF 272          
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|308801533|ref|XP_003078080.1| (unnamed protein product [Ostreococcus tauri])

HSP 1 Score: 252.677 bits (644), Expect = 2.334e-77
Identity = 123/242 (50.83%), Postives = 163/242 (67.36%), Query Frame = 0
Query:   24 AQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANNSAVTARRRVEGDPGRDTGDSRAGRVLAQGVQGERATSKCARKM 265
            A  DG+LLAD    L G  +YLP F CG KD+++L +L  +++  +   R E G  MV+WS+HLK ENP+FS TF+ V+ ++  YFDVE+ ATR+NFYRDG+D+KPFHHDSHAYG   ++EDFT+G SFG +REL F HE SG TF+FPQ NGDVFAF S+VN+ F HGVP+ K  ++   PRFSIIAWGRRRT+N+ N  V+     + D  +    + A +   + V G    S+  RK 
Sbjct:   40 AMVDGRLLADFEAVLSGNAIYLPSFHCGSKDYAVLASLAAEMERAV---RAESG-GMVNWSKHLKHENPEFSETFHRVVKEMADYFDVEVYATRMNFYRDGTDWKPFHHDSHAYGGRAQREDFTMGASFGGSRELIFLHEPSGNTFTFPQNNGDVFAFTSEVNKRFKHGVPKAKSNND---PRFSIIAWGRRRTINSRNGPVSNESSEKSDQTK--ASTEATKSHNELVTGNGEVSQLIRKF 272          
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|693500691|emb|CEF97064.1| (Oxoglutarate/iron-dependent dioxygenase [Ostreococcus tauri])

HSP 1 Score: 252.292 bits (643), Expect = 3.378e-77
Identity = 125/250 (50.00%), Postives = 163/250 (65.20%), Query Frame = 0
Query:   24 AQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANNSAVTARRRVEGDPGRDTGDSRAGRVLAQGVQGERATSKCARKMGGEEKVGQ 273
            A  DG+LLAD    L G  +YLP F CG KD+++L +L  +++      R  E   MV+WS+HLK ENP+FS TF+ V+ ++  YFDVE+ ATR+NFYRDG+D+KPFHHDSHAYG   ++EDFT+G SFG +REL F HE SG TF+FPQ NGDVFAF S+VN+ F HGVP+ K  ++   PRFSIIAWGRRRT+N+ N A     +V    GR+T  + +     Q      AT      + G  +V Q
Sbjct:   40 AMVDGRLLADFEAVLSGNAIYLPSFHCGSKDYAVLASLAAEME------RAAESGGMVNWSKHLKHENPEFSETFHRVVKEMADYFDVEVYATRMNFYRDGTDWKPFHHDSHAYGGRAQREDFTMGASFGGSRELIFLHEPSGNTFTFPQNNGDVFAFTSEVNKRFKHGVPKAKSNND---PRFSIIAWGRRRTINSRNGA----GQVTESTGRETASNESSEKSDQTKASTEATKSHNELVTGNGEVSQ 276          
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|145344773|ref|XP_001416899.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144577125|gb|ABO95192.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 238.81 bits (608), Expect = 2.585e-73
Identity = 113/202 (55.94%), Postives = 142/202 (70.30%), Query Frame = 0
Query:   21 SWIAQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANN 222
            S  A  DG+LLAD    L G  +YL  F    +D+S+L  L  +++      R  E   MV+WS+HLK ENPDFS TF  V+D +  YFDVE+ ATR+NFYRDG+D+KPFHHDSHAYG   ++EDFT+G SFG +REL F HE SG TF+FPQ NGDVFAF S+VN+ F HGVP+ K  ++   PRFSIIAWGRRR++N+ N
Sbjct:   37 SEAAMVDGRLLADFESVLSGNAIYLQNFHASARDYSVLANLAREME------RAAELGGMVNWSKHLKHENPDFSETFQRVVDAMADYFDVEVYATRMNFYRDGTDWKPFHHDSHAYGGRAQREDFTMGASFGGSRELIFLHEPSGNTFTFPQNNGDVFAFTSEVNKRFKHGVPKAKSNND---PRFSIIAWGRRRSINSRN 229          
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|612389059|ref|XP_007510050.1| (hypothetical protein Bathy12g03070 [Bathycoccus prasinos] >gi|412985719|emb|CCO19165.1| hypothetical protein Bathy12g03070 [Bathycoccus prasinos])

HSP 1 Score: 242.276 bits (617), Expect = 4.499e-73
Identity = 112/199 (56.28%), Postives = 141/199 (70.85%), Query Frame = 0
Query:   25 QTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSE-KVGPRFSIIAWGRRRTLNANN 222
            + D  LL  +   + G  VY+  F C   D+  L+ L  DL  C    +EE    M++WS+HLK ENP+FS TF  V++++  YFDV++ ATRLNFYRDGSD+KP+HHDSHA+G+NG KEDFT+G SFG+ R LSF HE S  +F FPQ NGDVFAF S+VN A  HGVP+L G+ + KV PRFSIIAWGRRR+LNA N
Sbjct:   48 RVDANLLDSVAEIVSGNAVYIERFHCEESDYETLERLANDLDEC---SKEETEEGMINWSKHLKRENPEFSETFRTVVERMAEYFDVDVFATRLNFYRDGSDWKPYHHDSHAFGANGHKEDFTMGASFGAPRALSFLHEPSASSFEFPQKNGDVFAFSSEVNAAMKHGVPQLSGQEQFKVNPRFSIIAWGRRRSLNARN 243          
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|303272769|ref|XP_003055746.1| (predicted protein, partial [Micromonas pusilla CCMP1545] >gi|226463720|gb|EEH60998.1| predicted protein, partial [Micromonas pusilla CCMP1545])

HSP 1 Score: 232.646 bits (592), Expect = 1.991e-71
Identity = 116/210 (55.24%), Postives = 144/210 (68.57%), Query Frame = 0
Query:   21 SWIAQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQH-------CLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRL-KGRSEKVGPRFSIIAWGRRRTLNANN 222
            S IAQ+DGQL +D    L G  +YLP F C  +D+++L +L  DL+                    MV+WS+HLK ENP FS TF  V+D +  +FDV++ ATRLNFYRDG+D+KPFHHDSHA+G   K+EDFT+G SFG  REL F HE SG TF+FPQ NGDVFAF ++VN+ F HGVP+L +G     GPRFSIIAWGRRR+LNA N
Sbjct:   42 SEIAQSDGQLASDFEAVLRGEAIYLPHFHCAARDYALLASLAKDLEEHEAAPGTDDADAAGAGAGGMVNWSKHLKHENPTFSATFQSVVDAMAAHFDVDVYATRLNFYRDGTDWKPFHHDSHAFGGREKREDFTMGASFGGERELEFLHEPSGGTFTFPQKNGDVFAFTTEVNKRFKHGVPKLTRGIG---GPRFSIIAWGRRRSLNARN 248          
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|255071569|ref|XP_002499459.1| (hypothetical protein MICPUN_56403 [Micromonas commoda] >gi|226514721|gb|ACO60717.1| hypothetical protein MICPUN_56403 [Micromonas commoda])

HSP 1 Score: 238.039 bits (606), Expect = 4.337e-71
Identity = 117/202 (57.92%), Postives = 144/202 (71.29%), Query Frame = 0
Query:   23 IAQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQ-HCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRL-KGRSEKVGPRFSIIAWGRRRTLNANN 222
            I+  DGQL AD    L+G  +YLP F CG  DF++L  L  D++ H L +    EG  MV+WS+HLK ENP+FS TF  ++  +  YFDV++ ATRLNFYRDG+D+KPFHHDSHAYG   K+EDFT+G SFG  REL+F HE SG  FSFPQ NGDVFAF ++VN+ F HGVP+L +G     GPRFSIIAWGRRR L + N
Sbjct:   42 ISMADGQLAADFESVLKGEAIYLPEFHCGKNDFALLAGLAKDMETHELAS----EGGGMVNWSKHLKHENPEFSQTFARIVHAMSEYFDVDVYATRLNFYRDGTDWKPFHHDSHAYGGREKREDFTMGASFGGERELTFLHEPSGSQFSFPQRNGDVFAFTTEVNKRFKHGVPKLTRGIG---GPRFSIIAWGRRRALTSRN 236          
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|528247462|gb|EPY33237.1| (hypothetical protein STCU_02391 [Strigomonas culicis])

HSP 1 Score: 220.32 bits (560), Expect = 1.404e-65
Identity = 108/211 (51.18%), Postives = 138/211 (65.40%), Query Frame = 0
Query:   16 IIRPDSWIAQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENP-DFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANNSAV 225
            I+R +S  A+ D QL  D    L G  VY+  F+C   DF++   +  +L H        EG  ++ WS+H  F+NP D S TFN ++D L  YFDV++ ATRLN+YRDGS +KP HHDSHAYG   ++EDFTVG++ GS R+L F HE S + F+FPQTNGD FAF  +VNR FTHGVPR+      +G RFSIIAWGRRR+LN  N  V
Sbjct:   67 IMRSES--ARIDAQLAEDFTAILRGNTVYMRNFVCAETDFTLYDQMKAELIHSTGASMSGEG-GLIEWSKHQVFDNPTDISPTFNLIIDMLAEYFDVDVYATRLNYYRDGSQWKPQHHDSHAYGGRAEREDFTVGITLGSNRKLVFIHEASKREFNFPQTNGDCFAFTGEVNRLFTHGVPRVHA---PIGDRFSIIAWGRRRSLNERNGGV 271          
BLAST of EWM23348.1 vs. NCBI_GenBank
Match: gi|340054949|emb|CCC49257.1| (conserved hypothetical protein [Trypanosoma vivax Y486])

HSP 1 Score: 211.46 bits (537), Expect = 2.187e-62
Identity = 105/216 (48.61%), Postives = 138/216 (63.89%), Query Frame = 0
Query:   15 AIIRPDSWIAQTDGQLLADMVPALEGGCVYLPGFICGPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENP-DFSHTFNGVLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGS-------NGKKEDFTVGVSFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRSEKVGPRFSIIAWGRRRTLNANN 222
            +++R ++  A+ DG+L  D    L G  VY+P F+C   D S+ + L  +L      +  +EG  ++ WS+H  FENP D S+TFN ++D L  YFDV++ ATRLN+YRDG  +KP HHDSHAYG+         ++EDFTVGV+ G+TR L F HE SG  F FPQ NGD FAF S++N  FTHGVPR+      +G RFSII WGRRRT N  N
Sbjct:   40 SVLRSET--ARVDGRLCEDFGAILSGNAVYIPRFVCDEADMSLYRKLKEELVAATGAQMSKEG-GLIEWSRHQIFENPTDISNTFNAIIDMLAEYFDVDVYATRLNYYRDGQQWKPQHHDSHAYGTAKGAGGNQPEREDFTVGVTLGATRSLLFVHEASGHQFDFPQRNGDCFAFTSEINSTFTHGVPRVNA---PIGDRFSIILWGRRRTYNERN 249          
The following BLAST results are available for this feature:
BLAST of EWM23348.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104356|gb|EWM23348.1|0.000e+0100.00Oxoglutarate/iron-dependent oxygenase [Nannochloro... [more]
gi|1199288644|gb|OUS43780.1|1.782e-7750.83hypothetical protein BE221DRAFT_78619 [Ostreococcu... [more]
gi|308801533|ref|XP_003078080.1|2.334e-7750.83unnamed protein product [Ostreococcus tauri][more]
gi|693500691|emb|CEF97064.1|3.378e-7750.00Oxoglutarate/iron-dependent dioxygenase [Ostreococ... [more]
gi|145344773|ref|XP_001416899.1|2.585e-7355.94predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|612389059|ref|XP_007510050.1|4.499e-7356.28hypothetical protein Bathy12g03070 [Bathycoccus pr... [more]
gi|303272769|ref|XP_003055746.1|1.991e-7155.24predicted protein, partial [Micromonas pusilla CCM... [more]
gi|255071569|ref|XP_002499459.1|4.337e-7157.92hypothetical protein MICPUN_56403 [Micromonas comm... [more]
gi|528247462|gb|EPY33237.1|1.404e-6551.18hypothetical protein STCU_02391 [Strigomonas culic... [more]
gi|340054949|emb|CCC49257.1|2.187e-6248.61conserved hypothetical protein [Trypanosoma vivax ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7323rna7323Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications