rna7323, rna7323 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7323
Unique Name	rna7323
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2229
Alignment location	CM002471.1:328411..331579 +

Link to JBrowse

Properties


Property Name	Value
Product	Oxoglutarate/iron-dependent oxygenase
Orig transcript id	gnl\|cribi\|Naga_100057g27.3907.mrna
Orig protein id	gnl\|cribi\|Naga_100057g27.3907
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:328411..331579 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100057g27	gene7088	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7323	rna7323-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23348.1	cds7306	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:328411..331579+
coding sequence from alignment at CM002471.1:328411..331579+

mRNA sequence

>rna7323 ID=rna7323|Name=rna7323|organism=Nannochloropsis gaditana|type=mRNA|length=2229bp
ATGCTCCGAATGGGGAGTTTTAGCGGTGGTCGGCGGAGCAGTCGGCGCAA
ATCAGCGTCTTCGCGTCCGAATTCCGTAGATTGGTGCGCCCCTTTGGCCA
GCCTTGAAGCTTGTTTGACCGAGAAAACTGATTTAATCGATGATATGAAA
AAGGTACTGCCCATTACTGTCCAAGCTCCTGGCATTGTGGCAATTGGAAT
GCGCGGCTCTGGCAAATCGACCATACTTGAAGCATTGAGCGGCGTTCCCT
TATCCCACGCGAGCGGTCTGCAGCGTCCAGTGAGAGTGAAAATTGTGTCT
GACCCTACCTGCACAAAGGAGTATGTCCTAGTCAGCGGGACGGACCCTCT
TTTCAAGCAGAACACCAGGCGGCTGGAGCATGCCCGAGACCTGCCGGCGT
GCCTAGCTGCACTCGACAAAGACGTGCGCACTGATGAAGTAGGGAGAACG
CAGGGTATGAAAGCGGAGACCAATCCTGTCGAAGATGCGGGGACCCCCAC
CTCCATTTCTCAAGAGGAAGAAGAAGCGGAAAACATAAGGGAGGAGCTGT
CCGAGCAGTCGAGCTATTTTACAGGCCTCGGCGGTGTTGGTAGCTCAGGT
CCTGCTGAAGACCTGAGGTTGATATATGTGCGCGTTGTCCGTCCCTCTGG
CCCCACATATACCATCATGGACTTTCCTGCTTTTTCCTCTCCACCCCGTG
CCGAGGAAGAAGCCTGCCTGAACCGCGTCTTGGCAAAGGAGAGAGATCCA
GCCAGTCTCGTCCTCGCCGTCATGCCTGTTAAGGACGTATTCGACCGAGC
CGAGGTACTTCAGATTGCGAAACGCCTTGATCCAGGCTCCAAGCAAACAA
TTGGAGTCGTGACCAAGATGCATTTGGTGACTAAAGGCATGGGGATCGTG
GAAAAGCTCCAGATGAATGGAAGCAAGGCCGTGGCGCTGCCACTTGGGTA
CGTAGCTGTGTGTGCGGCCGATCCAGGAAACCCAGCAGGGACTTATCAAG
ACGTTCTCGATTATGAGGCCAAATTCTTTACAACCAACCCTCTGCTTAAG
GGGTTGAAGCCGGAGCGATGGGGCCTGACCTCCCTCAAGTCGCTTGTCAT
CCATTGCCAGACCAACAGCATTACGCAACGTATACCCGGACTCAGCCAAG
CCATTCGCTCGGAAATCGAGGATTTGAGCCGAACCTGTGTCCAAAACGAC
GAAAGGATAGAGCAGAAGGCGACCACGCCCCGGAAAAAGAAGTCTTTAGG
GGTGTTTGAGAATACCAAGGACGTGTTCAGCAAGCTATGCTCTGAGATGA
CACTGGTCATGTTCGACATTAACGACTTGGCTAACGGAAGCAGCACTCGC
CAAGATCGGAAACTCAATCTAGGCCCACGTTTCCTGATCGCAGTCGAAAC
GCGGGAAGCGGAGGCAAGGCGCGCCTTGCCCGTGTGCAACTCCTCCGAGG
TCGCCGATTGGCTGTGGGGAGAGCTGCAGGAATTTGGGGGCGTCGCTAGC
AACTCGGACTCCATAATGCATCCTATCTTCCGCAAGGCCGTTCGCGAATT
GTTCTTCCCTGTTTTGCGTGGGTATGCCAAAAGCATCATCGATGACCTGG
ACGAGATGCTTAAGTATGCGGCGGAAAAAATGCTGGAAGAGCGGTTCGGA
GCCTATAGTCGTCTCGTAGAGTCTCTTACTCGAGATGTCACACAGGTTCA
AGAGACAAAGAAAAGGGAGGCAGACGCTCTGATTGCTCGACTCCTGGAGG
CCGAATTAAATTGGGTGCTCGTGGATGCGGTAGATATGGCGCACATTGAA
AAAGAGACTGCCAAGGACATGGAAAATAGCAAGACAGGGGACCGTGGAGA
AAGGAGGAGCGATATGTGGGGCATGGAGGGCGTCGATGAGGAGCAGAGGG
AAAGTAAGTTGAACAAGAGCAAGAGTGGCAAGGTGTTTATGCAATCGGAT
CACCGAGGGGAGCTCCAGGCAATGCAGAGTTGCCTTCATCAGTATGTGCA
TCTATTGCTTAGGCGCATGTTCTACGCTGTTCCTATGAACACCAGAAATG
TGATGATTAATGAATTCCGTGACGATGTGCTCTCTGTGGTCACGGGGAAG
TACAATGAAGAAACGAAACTTCGGGCTCTGATGTCTGAGGAGCTGTGGGC
GGGTCACAGTCGACAGCAGCAGGCTGTTCGCAGATCTGCTTTGGAAGAGG
TCATGAATAAATTGGATTTACTGTCCTAG

protein sequence of rna7323

>rna7323-protein ID=rna7323-protein|Name=rna7323|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MLLVRLLWLMLEELAIIRPDSWIAQTDGQLLADMVPALEGGCVYLPGFIC
GPKDFSILKALTGDLQHCLDTRREEEGVRMVHWSQHLKFENPDFSHTFNG
VLDQLDHYFDVEILATRLNFYRDGSDFKPFHHDSHAYGSNGKKEDFTVGV
SFGSTRELSFRHEVSGQTFSFPQTNGDVFAFDSDVNRAFTHGVPRLKGRS
EKVGPRFSIIAWGRRRTLNANNSAVTARRRVEGDPGRDTGDSRAGRVLAQ
GVQGERATSKCARKMGGEEKVGQGEETPIGMEEVARMVEEMVLKEEEKEA
CRAPPLSRDEGRAARLIARGTAGKGEGRGGDEGGDAAGQQTSNGSDGKGE
LSATKSAGQTSRRPRRGGRVQHSWAG

mRNA from alignment at CM002471.1:328411..331579+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7323 ID=rna7323|Name=rna7323|organism=Nannochloropsis gaditana|type=mRNA|length=3169bp|location=Sequence derived from alignment at CM002471.1:328411..331579+ (Nannochloropsis gaditana)
ACGCCAACCAGGCCGAGGCATTTGGGGCGCAAAGAAGTGTCAATCGTCGA
CATCGCGATATAAACCTCTCTTCAATAATATTGGCACGATTAAATTGGAG
AGCCATGTATTCCAATGCTGCTGCAAACGGTGCTCCCTCAATGAGATTTT
CAAAACGGCCACACTCCTCAGCTTTCCAGCGACTTCAAATTTGCATTGAA
TTTCCTCAGCCCCAATATATTGCGCAAGCAGAGCAATAGGGCTTACTGCA
TTATTTGCAGAATTTCCTTCTACTGAAAGTGTCGATTTTTTTAACAATAG
TGAATTGGAAGTTAGAATTCTGGTAAAGCTTTTTTTTCTTAGGATTTGAT
GAGATCCCAACCTCTTCCTAAAGAAGAGGGTTTTCCTGACATTTACGTCC
GCACAAGTATCATTTATTCATCACCACAGATGTGAGATCTGACAAACGTG
ACCTGGAACACCCAGAAAAGCACTGTGTTGTGGTGGCTTGCAGACGCAGA
GCTAGCTGACTCATGCTTGGGTACCTTCGCCGTGCAGAAATGTAATTTCA
GCTATAGAAATCAAGCTTTAATAGATATATCAAACGGATTGCTTTTTAAA
ATAAGTAATTTGGCCCCATATACAAATACTACGTAATGCCCTGCTATTAA
ACCGTCCCCAACCCCCCACAAGGCCTTCTTGTCGTTCACTCTCTAGGTTG
TTGATATCCTTTACGCTGCCTCTGTAAATGCCGGCGCCAAACACAAAGCC
AGATCGAACATAAAGGAGTACAGCATGTTATGAGGCTAGAATTTTGTCAG
AATCAATGAGGAAGCGCGGCTTGTATCCGGCTGAGCCGAAGGCGATGGGC
CGCCCGGCGACAATTGCGGGGGTTATTTTTCTCCCTCAGAGGAAAGAGTA
TACGCACTCTTACACTCTTTATGTACAGTTTATCCTTGTGGGTATCGTCA
ACAGAGGAAAAAGTCCTCTGCTGTAGATGGGACGGACGTCAAGAGAGGGT
GGGCTTCATGTGTACACGCCATCGGACACTCTCGGTCAGTCGCCGCTCGC
TACGTGATGGAAGAAGCAGTTATGAGAGATGTCAATTGCACACATCGTTT
GTTCTTTAGCCTTCCGAACTCTTCTCCTGAGCTCACCCAGCGTGGTCATT
GGCTGCCCTTaatctccctcgcctccaaGAGAACACTGCTGGCTCTGTTC
TGAGGGAACTATCTTATTTTATTACACAAGCGCGACGGCGTCTTCGTCCG
CTGAATTCCTTTGTGCACCTACGTTCCCTTACAGAAGACTTTTGGAACAT
CCCATTTCATAACCATGTTTAAAACAAAATACGACACCACAACCATTAGA
AATTCGTGGCTTTAGAAGTGAAAAGGTCTTCATTGTCTGTAAAATTCATC
CCAAAGCCTCCCTATCGCGTGCGAGCGTCAGTGTGCGAGCGTCAGTCCTT
CACGATGAGCTCAGTGTCGACCCATCAAGATAGCGAGGACAAAGAAAAAC
TCTACAACAACCGCGTTAATGCTGCTCGTGCGGCTGTTATGGCTAATGTT
AGAAGAGCTAGCAATAATACGACCGGTAAGCCTGCAAGACTTACCAGGGA
GAGAGCCAGTAAAGGCAGTCAGCAATCTCTCGAGATTAAAAATCAAGCCT
CAACATTCATTCGCAAAATGATGAAGGACTCGTGGATTGCGCAGACGGAC
GGACAACTTCTCGCGGATATGGTTCCGGCCTTAGAAGGCGGTTGTGTATA
TTTACCAGGCTTTATTTGCGGCCCAAAAGACTTCAGCATCCTCAAGGCAC
TTACCGGCGACTTGCAGCACTGCCTGGACACGAggcgtgaagaagaaggg
gttAGAATGGTGCATTGGAGTCAACATCTGAAGTTCGAAAATCCTGATTT
CAGTCATACCTTCAATGGCGTGCTTGATCAGCTGGATCATTATTTCGACG
TGGAGATCCTGGCGACCCGTTTGAATTTTTACCGCGATGGGAGCGATTTC
AAGCCCTTCCATCACGACAGCCACGCCTACGGTTCgaatggaaagaagga
ggatttTACCGTGGGCGTGTCGTTTGGGAGCACGCGGGAATTGTCTTTTC
GCCACGAGGTGTCCGGGCAaaccttctctttccctcagaCCAACGGCGAC
GTCTTCGCCTTCGATTCAGACGTCAACCGGGCCTTCACCCACGGCGTACC
AAGGCTTAAAGGCCGTTCGGAAAAAGTAGGCCCGCGCTTTTCTATCATCG
CTTGGGGTCGGAGAAGGACTTTGAACGCGAATAATTCGGCGgtgacggcg
aggaggagagtggaaggGGATCCGGGGAGGGATACTGGAGACTCAAGGGC
GGGCAGGGTCTTGGCCCAGGGAGTTCAAGGAGAGCGCGCGACAAGCAAGT
GTGCTAGAAAGATGGGCGGCGAAGAAAAGGTGgggcaaggcgaggagaCC
CCCattgggatggaggaagtggcccgcatggtggaggagatggttctgaa
ggaggaggagaaagaagcgtGTCGGGCACCGCCACTTTCGCGAGATGAGG
GCCGTGCCGCACGACTAATAGCAAGAGGAacagcagggaaaggagaggga
agaggaggggatgaaggaggggacgcggCTGGACAGCAGACATCGAATGG
AtcagatgggaagggagaacTTTCAGCGACAAAATCCGCGGGCCAAACAA
GCCGGCGACCACGTCGGGGAGGCCGTGTGCAGCACTCGTGGGCCGGATGA
GACAACACACACACACGACGCGTAGGAAAATGGCGCGACTGATGGATGGA
TGCGAGGAGAGACCACGGAGTattgggaggggcaggcgaccATGAGGCGG
GATCGGAAACTACAGTGCGACTGACAGAAGAGAGGCCATGTGAACaaaga
tgaagatgaagtACTTTTCAGTTGTAGGGTTTAGTCGCAAAAAAGTACTT
TATTTTTTACCCGGTGCAATCTCATTTAAAAATGTGTCAGACCGTAATGT
ATTCGAAACAGTCTGATACACAAGTTCCTTCCACACTGCAATGTGGATTT
ACGCTGATCGTGGGTATTTATAGTCCTACCAATGACTGCTACATCGTAAA
AGCGTGAGCAAATCACAATTTTGACGGGTAATTACAAACCGAAGATTGAC
AAAAAATGACAATTCCACT

Coding sequence (CDS) from alignment at CM002471.1:328411..331579+

>rna7323 ID=rna7323|Name=rna7323|organism=Nannochloropsis gaditana|type=CDS|length=2262bp|location=Sequence derived from alignment at CM002471.1:328411..331579+ (Nannochloropsis gaditana)
ATGCTGCTCGTGCGGCTGTTATGGCTAATGTTAGAAGAGCTAGCAATAAT
ACGACCGGACTCGTGGATTGCGCAGACGGACGGACAACTTCTCGCGGATA
TGGTTCCGGCCTTAGAAGGCGGTTGTGTATATTTACCAGGCTTTATTTGC
GGCCCAAAAGACTTCAGCATCCTCAAGGCACTTACCGGCGACTTGCAGCA
CTGCCTGGACACGAggcgtgaagaagaaggggttAGAATGGTGCATTGGA
GTCAACATCTGAAGTTCGAAAATCCTGATTTCAGTCATACCTTCAATGGC
GTGCTTGATCAGCTGGATCATTATTTCGACGTGGAGATCCTGGCGACCCG
TTTGAATTTTTACCGCGATGGGAGCGATTTCAAGCCCTTCCATCACGACA
GCCACGCCTACGGTTCgaatggaaagaaggaggatttTACCGTGGGCGTG
TCGTTTGGGAGCACGCGGGAATTGTCTTTTCGCCACGAGGTGTCCGGGCA
aaccttctctttccctcagaCCAACGGCGACGTCTTCGCCTTCGATTCAG
ACGTCAACCGGGCCTTCACCCACGGCGTACCAAGGCTTAAAGGCCGTTCG
GAAAAAGTAGGCCCGCGCTTTTCTATCATCGCTTGGGGTCGGAGAAGGAC
TTTGAACGCGAATAATTCGGCGgtgacggcgaggaggagagtggaaggGG
ATCCGGGGAGGGATACTGGAGACTCAAGGGCGGGCAGGGTCTTGGCCCAG
GGAGTTCAAGGAGAGCGCGCGACAAGCAAGTGTGCTAGAAAGATGGGCGG
CGAAGAAAAGGTGgggcaaggcgaggagaCCCCCattgggatggaggaag
tggcccgcatggtggaggagatggttctgaaggaggaggagaaagaagcg
tGTCGGGCACCGCCACTTTCGCGAGATGAGGGCCGTGCCGCACGACTAAT
AGCAAGAGGAacagcagggaaaggagagggaagaggaggggatgaaggag
gggacgcggCTGGACAGCAGACATCGAATGGAtcagatgggaagggagaa
cTTTCAGCGACAAAATCCGCGGGCCAAACAAGCCGGCGACCACGTCGGGG
AGGCCGTGTGCAGCACTCGTGGGCCGGATGAATGCTGCTCGTGCGGCTGT
TATGGCTAATGTTAGAAGAGCTAGCAATAATACGACCGGACTCGTGGATT
GCGCAGACGGACGGACAACTTCTCGCGGATATGGTTCCGGCCTTAGAAGG
CGGTTGTGTATATTTACCAGGCTTTATTTGCGGCCCAAAAGACTTCAGCA
TCCTCAAGGCACTTACCGGCGACTTGCAGCACTGCCTGGACACGAggcgt
gaagaagaaggggttAGAATGGTGCATTGGAGTCAACATCTGAAGTTCGA
AAATCCTGATTTCAGTCATACCTTCAATGGCGTGCTTGATCAGCTGGATC
ATTATTTCGACGTGGAGATCCTGGCGACCCGTTTGAATTTTTACCGCGAT
GGGAGCGATTTCAAGCCCTTCCATCACGACAGCCACGCCTACGGTTCgaa
tggaaagaaggaggatttTACCGTGGGCGTGTCGTTTGGGAGCACGCGGG
AATTGTCTTTTCGCCACGAGGTGTCCGGGCAaaccttctctttccctcag
aCCAACGGCGACGTCTTCGCCTTCGATTCAGACGTCAACCGGGCCTTCAC
CCACGGCGTACCAAGGCTTAAAGGCCGTTCGGAAAAAGTAGGCCCGCGCT
TTTCTATCATCGCTTGGGGTCGGAGAAGGACTTTGAACGCGAATAATTCG
GCGgtgacggcgaggaggagagtggaaggGGATCCGGGGAGGGATACTGG
AGACTCAAGGGCGGGCAGGGTCTTGGCCCAGGGAGTTCAAGGAGAGCGCG
CGACAAGCAAGTGTGCTAGAAAGATGGGCGGCGAAGAAAAGGTGgggcaa
ggcgaggagaCCCCCattgggatggaggaagtggcccgcatggtggagga
gatggttctgaaggaggaggagaaagaagcgtGTCGGGCACCGCCACTTT
CGCGAGATGAGGGCCGTGCCGCACGACTAATAGCAAGAGGAacagcaggg
aaaggagagggaagaggaggggatgaaggaggggacgcggCTGGACAGCA
GACATCGAATGGAtcagatgggaagggagaacTTTCAGCGACAAAATCCG
CGGGCCAAACAAGCCGGCGACCACGTCGGGGAGGCCGTGTGCAGCACTCG
TGGGCCGGATGA

Synonyms

Publications