EWM23363.1, cds7302 (CDS) Nannochloropsis gaditana

Overview
NameEWM23363.1
Unique Namecds7302
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:318047..319129 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23363.1
Productdna-directed rna polymerase i and iii subunit
Orig transcript idgnl|cribi|Naga_100057g31.3922.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:318047..319129 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: INTERPRO
TermDefinition
IPR001514DNA-dir_RNA_pol_30-40kDasu_CS
IPR011262DNA-dir_RNA_pol_insert
IPR009025RBP11-like_dimer
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
Homology
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|585104371|gb|EWM23363.1| (dna-directed rna polymerase i and iii subunit [Nannochloropsis gaditana])

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query:    1 MAATRIEAYRVEADQLYESYRSLTLAEVKTVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEAEGRGEGGGGKG 360
            MAATRIEAYRVEADQLYESYRSLTLAEVKTVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEAEGRGEGGGGKG
Sbjct:    1 MAATRIEAYRVEADQLYESYRSLTLAEVKTVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEAEGRGEGGGGKG 360          
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|568025718|gb|ETL99722.1| (hypothetical protein L917_03475 [Phytophthora parasitica])

HSP 1 Score: 300.442 bits (768), Expect = 7.273e-97
Identity = 159/318 (50.00%), Postives = 207/318 (65.09%), Query Frame = 0
Query:   30 TVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAI 347
            + VE  + ++++ I  +  EE+VFDLIG DA+ ANALRRILLAEVP+MAIE V+++ NSSI+ DEVLAHRLGL+P+  DP  F+       AEA + NT+VF+LD   V  K +    KD +  I++           +VY++DL W P G QE R     P   H DILIAKL+PGQ I +E  CRKGVGKDHAK+SPV TASYRL+P ++  E V G EA RLVE C +G+FDIED+      G    AVV   R C+MCR C+RE     ++RL R +DHFIFS+ESVG + P+ +L +A+ VL EKC   LE+ 
Sbjct:   27 SFVEQSKRQVKVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLD---VTCKFDPQHPKDPTKAIHS-----------SVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVEGAEAKRLVEECQIGLFDIEDI------GGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCNIALESF 322          
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|675213679|ref|XP_008915724.1| (hypothetical protein PPTG_19124 [Phytophthora parasitica INRA-310] >gi|566032348|gb|ETI55259.1| hypothetical protein F443_02053 [Phytophthora parasitica P1569] >gi|568058117|gb|ETM54762.1| hypothetical protein L914_01950 [Phytophthora parasitica] >gi|568084038|gb|ETM98983.1| hypothetical protein PPTG_19124 [Phytophthora parasitica INRA-310] >gi|570336045|gb|ETO83993.1| hypothetical protein F444_02064 [Phytophthora parasitica P1976] >gi|570996467|gb|ETP53066.1| hypothetical protein F442_02006 [Phytophthora parasitica P10297] >gi|970649040|gb|KUF88415.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Phytophthora nicotianae] >gi|970658933|gb|KUF96639.1| hypothetical protein AM588_10006309 [Phytophthora nicotianae])

HSP 1 Score: 300.056 bits (767), Expect = 1.087e-96
Identity = 159/318 (50.00%), Postives = 207/318 (65.09%), Query Frame = 0
Query:   30 TVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAI 347
            + VE  + ++++ I  +  EE+VFDLIG DA+ ANALRRILLAEVP+MAIE V+++ NSSI+ DEVLAHRLGL+P+  DP  F+       AEA + NT+VF+LD   V  K +    KD +  I++           +VY++DL W P G QE R     P   H DILIAKL+PGQ I +E  CRKGVGKDHAK+SPV TASYRL+P ++  E V G EA RLVE C +G+FDIED+      G    AVV   R C+MCR C+RE     ++RL R +DHFIFS+ESVG + P+ +L +A+ VL EKC   LE+ 
Sbjct:   27 SFVEQSKRQVKVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLD---VTCKFDPEHPKDPTKAIHS-----------SVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVEGAEAKRLVEECQIGLFDIEDI------GGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCNIALESF 322          
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|567968013|gb|ETK93167.1| (hypothetical protein L915_03611 [Phytophthora parasitica] >gi|567996474|gb|ETL46584.1| hypothetical protein L916_03556 [Phytophthora parasitica] >gi|570960084|gb|ETP25063.1| hypothetical protein F441_02019 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 299.286 bits (765), Expect = 1.913e-96
Identity = 159/318 (50.00%), Postives = 207/318 (65.09%), Query Frame = 0
Query:   30 TVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAI 347
            + VE  + ++++ I  +  EE+VFDLIG DA+ ANALRRILLAEVP+MAIE V+++ NSSI+ DEVLAHRLGL+P+  DP  F+       AEA + NT+VF+LD   V  K +    KD +  I++           +VY++DL W P G QE R     P   H DILIAKL+PGQ I +E  CRKGVGKDHAK+SPV TASYRL+P ++  E V G EA RLVE C +G+FDIED+      G    AVV   R C+MCR C+RE     ++RL R +DHFIFS+ESVG + P+ +L +A+ VL EKC   LE+ 
Sbjct:   27 SFVEQSKRQVKVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDNEEAEATDENTIVFKLD---VTCKFDPEHPKDPTKAIHS-----------SVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVEGAEAKRLVEECQIGLFDIEDI------GGVPTAVVKDQRVCTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCNIALESF 322          
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|1214695300|gb|OWZ09120.1| (DNA-directed RNA polymerase I and III subunit RPAC1 [Phytophthora megakarya])

HSP 1 Score: 298.516 bits (763), Expect = 4.280e-96
Identity = 157/318 (49.37%), Postives = 208/318 (65.41%), Query Frame = 0
Query:   30 TVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAI 347
            + VE  + ++++ I  +  +E+VFDLIG DA+ ANALRRILLAEVP+MAIE V+++ NSSI+ DEVLAHRLGL+P+  DP  F+       AEA + NT+VF+LD   +  K +    KD +  I++           +VY++DL W P G QE R     P   H DILIAKL+PGQ I +E  CRKGVGKDHAK+SPV TASYRL+P ++F E V G EA RLV+ C +G+FDIED+           AVV   R C+MCR C+RE     ++RL RV+DHFIFS+ESVG + P+ +L +A+ VL EKC   LE+ 
Sbjct:   27 SFVEQSKRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAFPDDEEAEATDENTIVFKLD---ITCKYDPDHPKDPTKAIHS-----------SVYSRDLEWVPQGNQEERFGSIRP--VHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVEFTEKVEGAEAKRLVDECQIGLFDIEDI------SGVPTAVVKDERSCTMCRNCIREPGWNEKIRLGRVSDHFIFSVESVGMIKPEELLLEALNVLGEKCNVALESF 322          
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|813171390|ref|XP_012204450.1| (hypothetical protein SPRG_09634 [Saprolegnia parasitica CBS 223.65] >gi|641530674|gb|KDO24786.1| hypothetical protein SPRG_09634 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 298.13 bits (762), Expect = 5.044e-96
Identity = 159/318 (50.00%), Postives = 205/318 (64.47%), Query Frame = 0
Query:   32 VEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEA 349
            +E  ++  +I I  +D E MVFD++G DAS ANA RRILLAEVP+MAIE V+++ NSSI+ DEVLAHRLGLIP++ DP  F+       AEA + NTLVF+LD        E  ++  S       D S  KA   +VY++ L W P G QE R     P     DILIAKL+PGQ I +E  CRKGVGKDHAK+SPV TASYRLLP I F  P+ G +A  L + CPM VFDIED            A+VARPRDC+MCREC+R      +V+L RV+DHFI+S+E+VG L P+ +L +A++VL  KC   ++++ A
Sbjct:   27 LESFKKNFKIKIQSLDEESMVFDMVGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLMVDPRDFQSFPEHEEAEATDENTLVFKLDVV-----CEASKEDPS-------DIS--KATNASVYSRHLEWIPQGMQEERFGNIRP--VSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPLKGADAKTLQKTCPMNVFDIEDSA----------AIVARPRDCTMCRECIRAPGWDAKVKLGRVSDHFIYSVETVGMLKPEELLPEALKVLMAKCDVAVDSLNA 318          
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|301095581|ref|XP_002896890.1| (DNA-directed RNA polymerase I and III subunit RPAC1, putative [Phytophthora infestans T30-4] >gi|262108537|gb|EEY66589.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative [Phytophthora infestans T30-4])

HSP 1 Score: 297.745 bits (761), Expect = 6.472e-96
Identity = 162/338 (47.93%), Postives = 215/338 (63.61%), Query Frame = 0
Query:   10 RVEADQLYESYRSLTLAEVKTVVEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAI 347
            RV  D  ++S  S +       VE  + ++++ I  +  +E+VFDLIG DA+ ANALRRILLAEVP+MAIE V+++ NSSI+ DEVLAHRLGLIP+  DP  F+       AEA + NT+VF+LD   V  K +    KD +  I++           +VY++DL W P G QE R     P   H DIL+AKL+PGQ I +E  CRKGVGKDHAK+SPV TASYRL+P ++ +E V G +A RLVE C +G+FDIED+      G    AVV   R C+MCR C+RE     ++RL R +DHFIFS+ESVG + P+ +L +A+ VL EKC   LE+ 
Sbjct:    9 RVGQDAPHQSESSYSF------VEQSKRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLNVDPREFQAFPDNEEAEATDENTIVFKLD---VTCKFDPEHPKDPTKAIHS-----------SVYSRDLEWVPQGNQEERFGSIRP--VHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECQIGLFDIEDI------GGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCNVALESF 318          
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|1173953436|gb|OQS00979.1| (DNA-directed RNA polymerase I and III subunit RPAC1 [Thraustotheca clavata])

HSP 1 Score: 297.745 bits (761), Expect = 6.619e-96
Identity = 162/319 (50.78%), Postives = 205/319 (64.26%), Query Frame = 0
Query:   32 VEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVG-RVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEA 349
            +E  ++  +I I ++  E++VFD IG DAS ANA RRILLAEVP+MAIE V+++ NSSI+ DEVLAHRLGLIP+  DP  F+       AEA + NTLVF+LD             KD    I+       KA   +VY++ L W P G QE R     P     DILIAKL+PGQ I +E  CRKGVGKDHAK+SPV TASYRLLP I F  P+ G++A  L + CPM VFDIED            AVVARPRDC+MCREC+R  PG   +V+L RV+DHFIFS+E+VG L P+ +L +A++VL  KC   LE++ +
Sbjct:   27 LESFKKNFKIKIQQLTDEDIVFDAIGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLQVDPRDFQSFPEHEEAEATDENTLVFKLDVV-------CEADKDDPEDIS-------KATNASVYSRHLEWIPQGMQEERFGNIRP--VSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPIKGQDAKTLQKTCPMNVFDIED----------SHAVVARPRDCTMCRECIR-APGWDEKVKLGRVSDHFIFSVETVGMLKPEELLPEALKVLMSKCDVALESLNS 318          
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|669151342|ref|XP_008611233.1| (DNA-directed RNA polymerase I and III subunit RPAC1 [Saprolegnia diclina VS20] >gi|530737241|gb|EQC35483.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Saprolegnia diclina VS20])

HSP 1 Score: 297.745 bits (761), Expect = 7.782e-96
Identity = 160/318 (50.31%), Postives = 205/318 (64.47%), Query Frame = 0
Query:   32 VEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEA 349
            +E  ++  +I I  +D E MVFD++G DAS ANA RRILLAEVP+MAIE V+++ NSSI+ DEVLAHRLGLIP++ DP  F+       AEA + NTLVF+LD        E  ++  S       D S  KA   +VY++ L W P G QE R     P     DILIAKL+PGQ I +E  CRKGVGKDHAK+SPV TASYRLLP I F  P+ G +A  L + CPM VFDIED            AVVARPRDC+MCREC+R      +V+L RV+DHFI+S+E+VG L P+ +L +A++VL  KC   ++++ A
Sbjct:   27 LESFKKNFKIKIQSLDEESMVFDMVGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLMVDPRDFQSFPEHEEAEATDENTLVFKLDVV-----CEASKEDPS-------DIS--KATNASVYSRHLEWIPQGMQEERFGNIRP--VSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPLKGADAKTLQKTCPMNVFDIED----------SVAVVARPRDCTMCRECIRAPGWDAKVKLGRVSDHFIYSVETVGMLKPEELLPEALKVLMAKCDVAVDSLNA 318          
BLAST of EWM23363.1 vs. NCBI_GenBank
Match: gi|673036220|ref|XP_008872071.1| (hypothetical protein H310_08187 [Aphanomyces invadans] >gi|574472510|gb|ETV99515.1| hypothetical protein H310_08187 [Aphanomyces invadans])

HSP 1 Score: 296.975 bits (759), Expect = 1.496e-95
Identity = 157/318 (49.37%), Postives = 207/318 (65.09%), Query Frame = 0
Query:   32 VEHLREKMRIHIVKMDVEEMVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRLGLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDSSNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILIAKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEEADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPGVGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEA 349
            V++ ++++++ I  +  +E+VFDLIG DAS ANA RRILLAEVP+MAIE V+++ NSSI+ DEVLAHRLGLIP+  DP  F+        EA + NTLVF+LD               +++  +  D S  KA   +VY++ L W P G QE R     P     DILIAKL+PGQ I +E  CRKGVGKDHAK+SPV TASYRLLP I F  PV+G +A  L + CPM VFDIEDL           AV ARPR+C+MCREC+R      +V++ RV+DHFIFS+E+VG L P+ +L +A++VL  KC   +E++ A
Sbjct:   27 VDNFKKQLKVKIQSLTDDEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSFPEHEEGEATDENTLVFKLDVTC------------TADPSDPNDIS--KATNASVYSRHLEWVPQGLQEERFGSIRP--VSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVVGADAKTLQKTCPMNVFDIEDLA----------AVAARPRNCTMCRECIRAPGWSDKVKMGRVSDHFIFSVETVGMLPPEDLLPEAIKVLVAKCDVAVESLNA 318          
The following BLAST results are available for this feature:
BLAST of EWM23363.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104371|gb|EWM23363.1|0.000e+0100.00dna-directed rna polymerase i and iii subunit [Nan... [more]
gi|568025718|gb|ETL99722.1|7.273e-9750.00hypothetical protein L917_03475 [Phytophthora para... [more]
gi|675213679|ref|XP_008915724.1|1.087e-9650.00hypothetical protein PPTG_19124 [Phytophthora para... [more]
gi|567968013|gb|ETK93167.1|1.913e-9650.00hypothetical protein L915_03611 [Phytophthora para... [more]
gi|1214695300|gb|OWZ09120.1|4.280e-9649.37DNA-directed RNA polymerase I and III subunit RPAC... [more]
gi|813171390|ref|XP_012204450.1|5.044e-9650.00hypothetical protein SPRG_09634 [Saprolegnia paras... [more]
gi|301095581|ref|XP_002896890.1|6.472e-9647.93DNA-directed RNA polymerase I and III subunit RPAC... [more]
gi|1173953436|gb|OQS00979.1|6.619e-9650.78DNA-directed RNA polymerase I and III subunit RPAC... [more]
gi|669151342|ref|XP_008611233.1|7.782e-9650.31DNA-directed RNA polymerase I and III subunit RPAC... [more]
gi|673036220|ref|XP_008872071.1|1.496e-9549.37hypothetical protein H310_08187 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7319rna7319Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications