rna7319, rna7319 (mRNA) Nannochloropsis gaditana

Overview
Namerna7319
Unique Namerna7319
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2878
Alignment locationCM002471.1:317998..319390 -

Link to JBrowse

Properties
Property NameValue
Productdna-directed rna polymerase i and iii subunit
Orig transcript idgnl|cribi|Naga_100057g31.3922.mrna
Orig protein idgnl|cribi|Naga_100057g31.3922
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:317998..319390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100057g31gene7084Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23363.1cds7302Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7319rna7319-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7319 ID=rna7319|Name=rna7319|organism=Nannochloropsis gaditana|type=mRNA|length=2878bp
TTGCGATGAGTTCCCTTTCAACTTGATGACCGTGATGCTTGCACTTTCCT
GAATAACCTTTCCTGCGTCGTCTCTTACATTCGTTACCAATTTTCTCACC
GCATCACCCAGCTTGGTTTTCAAAGCAGGTGTGATATCACAGGCCTCTGT
CATGGTTCCTTGGAGAAGACATTGTGAGCTCATCTATTTGACTTCTGCCA
AACGTCTGTGCTTCTTTGCCCTTTTCCTGCTTTTGGCCTGGCCTCCCCTC
GTTCATGCCGATGCAGCGGCTGCGGTTAACCATGGCAGCACGAGCGGGTT
GGAGAACAAAAAGGAGGCTTATCGCAGCGATCCTGCCCACCTTATTGTGC
CCACGGGCCACGACACGAAATACGACAAGGTGGACGAGCTGACGAACCTG
CTCCAGCAAAAAGTCGCGGCCCTCGTCAACGCGGAAAAAGCCATCACCTC
CCTTGAAAATCAGCTCAACATCGCCTCCAAACAACTTGAAACGACAGCAC
AAAGCCTGTCCGCCTCTGACAGAGAGACCTCGAGGCTCACGCAAGAGGTC
AAGGAGCTGACGCACAAGTTGGATGCAGCCGAAGCCTCCGCCGTGGCGGC
GACTGCTCAAGCCACTGTCGCTGTCGACACTGCCACTGCGGCAGCCAAGA
AGGAGACTGCGGCATGGATAGCCAGGGCGGAAAAGGCAGAGGCGGGCATG
GACGTGGCGGTGACGGAGGCGACGCGGCTGAAGGCCGAGACGCAGGCCTT
GCAAGCCAGCGTGGCCGCGGGCAAGGGCCTGGAGGGGCAGTGGTCTGAGG
AGAAAGCGCGGATGGAGAAGGAGCTGGCGATCGTGCGGGAAGAGAAGGAT
CAGGCCGTGGCGGGTTTGGAACGGGCGGCGGCCGAGGCGAAAGCCCGGGT
GGAGGAGGAAAAGGAAGGGACCGAAGCAGCGATGGGGAGGATGAGGGAAG
AAGCCGCGGCAGCCGTAGCGGAAGAGAGGGAGAAGACAGCCGCAGCAGTC
AGCAAGGCCCAAGAGGAGCTTTCCCGGGCGTTGCAGGTGGAAAGGGAGAA
GCGGGAGGAGGCGGTCTCGGCAGCCATGGGGGAGGCTACAAGGGCCAAGA
CCAGGGTGCAGGCGCTGGAGCGAGAGGTGGCGGACGCGGATCGGCGGATA
GCGAGCGCGCAAGAACAGCTCTCAGGGAAATTGGCGCAAAGGGAGAAGGA
GACGGAGGCGCTTCGGGCCAAGCTGGAAGAGGTGCTGGCCACCAAGTACA
CCTGGCGGGTGCTGTCGGGGGATTTCTCGGCGTTCTCCGGGCGCATGGCG
GCCCTTACACAGGCAAAGGCTCGGTGCGGGATAAGCTGGGCTGCACGAGA
AGGCAAGAGGCGAGGAGAAGAGGCGGGGCGGATGCTGCAACCGCATGTGG
AGGCCGCGCGGATGGCCCTAGGCTCTCAGTGCCGGGAGATGGAGAAGAGG
ATCCAGCCCCTGTGGACGGCCCACGTGCTACCCCCTTATCGGGAGCACGT
AGAGCCCCGACTGGCTCAGGCGGCGGCATACCTGGGACCGGTGTGGGAAG
GAGAGGTCCGGCCCCGGTTGCTGCAAGGCTGGGAGTGGGGAAAGCGGGGG
GCGGGGCGCGCGCGAGCATGGGGCCAGGCGCAGTGGTTGGCGGTGAAACG
GAGGGCAGTCATTTGGGTAAGGGGACAGGACTGGGCGGCCGGATTGGACG
CGGAACGAGTGGTCACGAGCCTTGAATACGTGCTGGTCGCCACCCTCTTC
TTCCTCCTTCGGCACCTGCTCTGGCGCCTTGTCATGACAGCCCTAGGCCT
TGTGGTGGGGCTGATCACGCTGCCCTTCCGGATCCTCTTTTGGATTTTCT
TCTGGCCGGTCTTGCTTTTTGGCGGGAAGAGAAAGGCGAAGATGGAGGTA
GAAGGGCCGCAGAGGGGGGGAGCGGGGAAGGCAGGAGGGGGTGGAGGGAA
AGGGCGAGGGGCTCCGGGCGGCCCGCCGCCGACGCACCCGTTGGCACACG
CGCAGCATGGCCGGTAAGCTTATGTAGGAGGCGGGGTGAGAGAGGAGAGG
CGGCGCTGAAAGGGAGGATGGGCGGGGACTGGGTGGGCGGACCGGAATTG
TTGACTGCAGGAGCGAAGGCGTGTCGCGGGTTGGGAAGGGTGAAGACAGA
GGAAGACGCGTGGGAGGACTGAAAGCACGAGAGCAAGGAGGGAACGGTCT
CGACGAGGGGAAATCAGTGCGGGATGGCAAGGGTCTGAGGGGCGTAAGGG
AGAAATGGATGGGTCGGGGGAGTGAGGAAGAGCACTCGTCCACTCGTCCG
CGGGACGGCGTGGTATGGAGAAGCCCTGAGTGTGTGGAAGAGGCGCCCGC
GTGTGGGGACGGCAAAGGAGGATGGAGGACGAGGAAACAGTCTCGAGGAG
CGGTTGGGACGGCACAGGAGGATGGAGGACGAGGAAACAGTCTCGAGGAG
CGGTTGGGACGGCACAGGAGGATGGAGGACGAGGAAACAGTCTCGAGGAG
CGGTTGGGGGGGGCGAGGCAAGGGGGGCCCACAGAGTGCTGCGCGAGCGG
AAGGACCATGTAGGAAGCACACGGGTGGGGGATGGGGGGAGAGCAATGCC
CCGAGGAGGGTGGGAGGGGAAGGGTCGCCCCCCCGGCTCGGAGCGAGGAG
GACGATAGAGGCAGGAGGGAGGGGCGGCCCGAGGCTCCGGGAAGGCAGGA
GTCCTCAGGGCACGGGCGGGTCCAAAGGGGAGAGGGCGCATTCAATCCCG
CTCTGCCTAGGAAGGAGAGGGGGGGGCCGGCCTAGGGGGGGCCGCCTGGG
AAAGACTGAGAGAAAAAGACCCGTCGACTGTCTCCAGCCTAGGGGAAAGT
CGACGCAAAGAACAAAATCAGGACCTGA
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protein sequence of rna7319

>rna7319-protein ID=rna7319-protein|Name=rna7319|organism=Nannochloropsis gaditana|type=polypeptide|length=360bp
MAATRIEAYRVEADQLYESYRSLTLAEVKTVVEHLREKMRIHIVKMDVEE
MVFDLIGADASFANALRRILLAEVPSMAIEIVHVFANSSILHDEVLAHRL
GLIPILADPAHFEDMLPGPAAEANEHNTLVFELDAAFVLPKGETGRQKDS
SNGINTGDASTLKAPTRNVYAKDLVWRPMGEQETRLAERVPQVAHPDILI
AKLKPGQRIKVEGWCRKGVGKDHAKYSPVGTASYRLLPSIDFVEPVLGEE
ADRLVELCPMGVFDIEDLGKGGARGAGRKAVVARPRDCSMCRECVREGPG
VGRVRLKRVADHFIFSIESVGTLAPDRVLKDAVRVLREKCTSLLEAIEAE
GRGEGGGGKG
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mRNA from alignment at CM002471.1:317998..319390-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7319 ID=rna7319|Name=rna7319|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp|location=Sequence derived from alignment at CM002471.1:317998..319390- (Nannochloropsis gaditana)
AGGTAATGGAACGTACTTGTGTTCGATGGAAAGCTCGGATCGGGTGAAGG
CCTTTCGTCAGTGGAGGGGATATCAACAGGACATCGCATATCATGGGACT
CGTGTGGCAAAATTATGACCGGACAAAACCTTATCTTTCGTACCTTTACA
TTTATAATCTTGCAGAAAGTTAATGCTGACGAAGTGATCAATACTGGTGG
TCCTTAATCTCGCCCGCCCCCGCTTCTAGCCTCCCCACCCCCTGATTTTT
ATCCTAAGCAAATGGCGGCCACACGCATCGAAGCTTACAGAGTGGAGGCG
GATCAACTCTATGAATCGTACCGATCACTGACCCTGGCTGAGGTTAAGAC
CGTGGTGGAACATTTGAGAGAAAAAATGCGCATACATATTGTCAAGATGG
ACGTGGAGGAAATGGTGTTTGACTTGATAGGGGCAGATGCTTCATTTGCA
AATGCCTTGCGACGGATACTTCTTGCGGAAGTGCCTTCCATGGCCATCGA
GATAGTACATGTCTTCGCTAACTCCTCCATCCTCCATGACGAAGTCCTCG
CGCACCGACTGGGTTTAATCCCTATTTTGGCTGATCCCGCCCACTTCGAG
GATATGCTCCCAGGTCCAGCTGCTGAGGCGAATGAGCACAACACTTTGGT
TTTCGAGCTCGACGCGGCCTTTGTATTGCCAAAGGGTGAGACAGGGCGGC
AAAAGGACAGCAGCAACGGTATCAATACCGGTGACGCGTCGACATTGAAG
GCACCGACTCGGAATGTCTACGCAAAAGACCTGGTCTGGCGGCCCATGGG
GGAACAAGAGACGAGGCTGGCCGAAAGAGTCCCCCAAGTGGCGCACCCCG
ACATCTTAATTGCAAAGTTGAAGCCTGGACAACGCATCAAAGTGGAGGGC
TGGTGTCGGAAAGGGGTTGGGAAGGACCACGCGAAGTACTCGCCAGTTGG
GACCGCGAGCTACCGCCTCTTGCCCTCCATCGACTTCGTGGAGCCCGTCC
TGGGAGAGGAGGCGGACAGGCTGGTGGAGCTATGTCCTATGGGCGTCTTT
GACATCGAGGATTTGGGCAAAGGAGGGGCAAGGGGGGCAGGGAGGAAGGC
CGTCGTGGCTCGACCGCGGGATTGCTCTATGTGTCGGGAGTGTGTCCGAG
AGGGGCCGGGTGTGGGGCGCGTCCGGTTGAAGCGCGTGGCCGATCATTTC
ATCTTCAGCATCGAATCCGTTGGCACGCTGGCGCCGGACAGGGTGCTGAA
GGATGCTGTGCGGGTCTTGCGCGAAAAGTGCACGTCTTTGCTGGAAGCGA
TCGAGGCAGAGGGGAGGGGGGAAGGAGGGGGAGGGAAGGGATGAAGATGC
TTGATACGGAATGAAGAAATGTTAGCGCTGTGGCTGCCAGGTC
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Coding sequence (CDS) from alignment at CM002471.1:317998..319390-

>rna7319 ID=rna7319|Name=rna7319|organism=Nannochloropsis gaditana|type=CDS|length=1083bp|location=Sequence derived from alignment at CM002471.1:317998..319390- (Nannochloropsis gaditana)
ATGGCGGCCACACGCATCGAAGCTTACAGAGTGGAGGCGGATCAACTCTA
TGAATCGTACCGATCACTGACCCTGGCTGAGGTTAAGACCGTGGTGGAAC
ATTTGAGAGAAAAAATGCGCATACATATTGTCAAGATGGACGTGGAGGAA
ATGGTGTTTGACTTGATAGGGGCAGATGCTTCATTTGCAAATGCCTTGCG
ACGGATACTTCTTGCGGAAGTGCCTTCCATGGCCATCGAGATAGTACATG
TCTTCGCTAACTCCTCCATCCTCCATGACGAAGTCCTCGCGCACCGACTG
GGTTTAATCCCTATTTTGGCTGATCCCGCCCACTTCGAGGATATGCTCCC
AGGTCCAGCTGCTGAGGCGAATGAGCACAACACTTTGGTTTTCGAGCTCG
ACGCGGCCTTTGTATTGCCAAAGGGTGAGACAGGGCGGCAAAAGGACAGC
AGCAACGGTATCAATACCGGTGACGCGTCGACATTGAAGGCACCGACTCG
GAATGTCTACGCAAAAGACCTGGTCTGGCGGCCCATGGGGGAACAAGAGA
CGAGGCTGGCCGAAAGAGTCCCCCAAGTGGCGCACCCCGACATCTTAATT
GCAAAGTTGAAGCCTGGACAACGCATCAAAGTGGAGGGCTGGTGTCGGAA
AGGGGTTGGGAAGGACCACGCGAAGTACTCGCCAGTTGGGACCGCGAGCT
ACCGCCTCTTGCCCTCCATCGACTTCGTGGAGCCCGTCCTGGGAGAGGAG
GCGGACAGGCTGGTGGAGCTATGTCCTATGGGCGTCTTTGACATCGAGGA
TTTGGGCAAAGGAGGGGCAAGGGGGGCAGGGAGGAAGGCCGTCGTGGCTC
GACCGCGGGATTGCTCTATGTGTCGGGAGTGTGTCCGAGAGGGGCCGGGT
GTGGGGCGCGTCCGGTTGAAGCGCGTGGCCGATCATTTCATCTTCAGCAT
CGAATCCGTTGGCACGCTGGCGCCGGACAGGGTGCTGAAGGATGCTGTGC
GGGTCTTGCGCGAAAAGTGCACGTCTTTGCTGGAAGCGATCGAGGCAGAG
GGGAGGGGGGAAGGAGGGGGAGGGAAGGGATGA
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Synonyms
Publications