rna7302, rna7302 (mRNA) Nannochloropsis gaditana

Overview
Namerna7302
Unique Namerna7302
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1306
Alignment locationCM002471.1:288522..289986 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100189g4.10209.mrna
Orig protein idgnl|cribi|Naga_100189g4.10209
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:288522..289986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100189g4gene7067Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7302rna7302-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23388.1cds7285Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7302 ID=rna7302|Name=rna7302|organism=Nannochloropsis gaditana|type=mRNA|length=1306bp
CACTTAGCCGACAGCTGAGCAAGTATGTCCAGTTCCTCCTCTCACCATGC
CACGCAAAAAGTGGGGGTGGTGGGAGCCACAGGGGCCGTCGGGGCAGAGA
TGATCAAGGTTTTAAAAGATCGACGATTCCCGGTCACTTTGGAAACGCTG
CGTCTCTTTGCGTCCGAGCGGAGTGCCGGGAAGACGCTGAGCACGCCATA
TGGGGAGAAAAAAATCGAGCTCTTCTCCGTGGAAGCAGCCCGTGAATGCG
ACTTTGTCTTTTTGGCTGTGTCCGGCACCTTCGCCCTGCAATACGCCAAG
AAGATCAGCGAGAAGGGTGGACCGTATGTAATCGACAACTCATCGGCCTT
TCGCTACGACGACGACATCCCCCTGGTGGTCCCGGAGATCAACGCCGCCG
CCATCGGGTCCTCCAAACTCATCGCCAACCCCAACTGCACCACTGCGATC
GCCGTCATGGCCCTCTGGCCGCTCCATCGTCGCTATGGGATCAAACGCCT
GCTCGTATCCACCTACCAGGCGGCCTCGGGAGCGGGGCAGGAAGGGATGG
AGGAGCTGCGGACGGGGATGGAGCACTACCTGATCGGCCGCGACTGCCAG
CACCAGGTCTTCGCGCACCCCCTCCCATTCAACGTCATCCCCCACATCGA
CAAGTTTCAAGAGAACGGCTACACCAAGGAGGAGATGAAGGTCGCGTGGG
AGACGCGGAAGATTTTCGACTACCCCCACATGGAGGTTTCATGCACAGCC
GTCCGCGTCCCGACTTTGCGCGCGCATGCCGAGGCCCTCACCATCGAGAC
TTACCAGGAAATCGAGCCCTCCCAGGCCCTCCTCCTCCTACAGGAAGCCC
CGGGCGTGGAGGTGCGGGACGACGGGGAGAAGAATCTGTACCCGATGCCG
CTCACGGCCACGGGGAAGTACGAGGTGGAGGTGGGACGGGTCCGGCAGTC
CCTGGTCTTTGGGCGGAAGGGCCTGGACATGTTCGTGTGCGGGGATCAGT
TGTTGCGGGGGGCGGCTAGCAACGCCGTTTTTATTGCCGAGGCGGTTCTC
TCGCCCGATAAGTATGGGGTGGGGAGGGAGGGAGGGTGGGGCTCGACCTT
TGCCTTTGAACACTGGAGGAGGGCGAAGCGGGCAGGGTGGATCCTGAGCT
TGCTCGTGGCGGTGGGGCTAGTGGCCGTGGAGTTGGCGAGCAGGGGGCGT
ATTTAGTGGGCAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGGAGGAGAAAGGGTCTATATAGGGGCAGGTAGGATG
CATGGA
back to top

protein sequence of rna7302

>rna7302-protein ID=rna7302-protein|Name=rna7302|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MSQLFNMRVIASLLLLAAVCNAFQAPIVSRGRSRQAPQMLGNFFKTAAPS
AATPGQGKVGAKAGKGGSRLNLKSIPKEAPPAPKKLASIAAGITPGGPKV
PSFPFKLGRTKEAKEATARVVNGKLEGYFTNEQLQALEVARREVPSSAAS
YWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVV
DTEATVGKRLKAAFGLK
back to top

mRNA from alignment at CM002471.1:288522..289986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7302 ID=rna7302|Name=rna7302|organism=Nannochloropsis gaditana|type=mRNA|length=1465bp|location=Sequence derived from alignment at CM002471.1:288522..289986- (Nannochloropsis gaditana)
AACATGTCACAGTTATTCAACATGCGCGTGATTGCATCTCTTTTGCTCCT
GGCTGCGGTATGCAATGCCTTCCAAGCTCCCATTGTTTCTCGAGGTAAGC
GGCCACGTCCCACGCTTTCTCACCACGCAGCCCCCTTTATATGGAAGACT
CACTTGGATGGAAAACATGCTCGAAATAAAATGGTAGAGAGGTTTTCACG
TGTGATAAACGTACGTTTAAACTTCTTTGCCGACTTGTGTCGTAGGGACT
CTGTTATATGATCACAACACGGTAGGCCAGCCAAAAGCAGCACGAAGCTC
TACATTGTGGTGCTCGCTCACGCAGACACACATCTGCAAATGCGTTGATT
CTTGTCGATATAATAACATCTTCGACTCCTCTCTCTCATCTTTGTCCCTC
CGTGCCAGGCCGTAGCCGCCAGGCCCCTCAAATGCTGGGCAACTTCTTCA
AGACGGCAGCTCCCTCCGCAGCCACTCCCGGGCAAGGCAAAGTAGGCGCC
AAGGCCGGAAAGGGCGGGTCTCGCCTCAACTTGAAGAGCATCCCCAAAGA
AGCCCCCCCCGCACCCAAGAAACTTGCCTCCATCGCGGCCGGTATCACTC
CAGGGGGCCCGAAGGTACCGTCTTTCCCCTTCAAGCTGGGGCGGACGAAA
GAGGCCAAGGAGGCCACGGCCCGCGTCGTGAATGGGAAGCTGGAGGTGAG
GAGGGGGAACACGGGCCGAGGGGGGAGTGGTGAGAGGGTATGGGACGACG
AGAGAGAGGTGAGCGGAAGGACACCACGTGCTCTCTCCCTTCATCGCGGT
GTCCAGGGAGCGCAAATTTGAGACCGTAGGACCCGATTTTCACGCTGCCA
TCTCCTCTTTTGCAGGGCTACTTCACCAATGAGCAACTCCAGGCGTTGGA
GGTGGCGCGTCGTGAGGTGCCGTCCTCGGCCGCATCCTACTGGCAGAAAA
TCGCCAGCAAGGTACCCGGACAGACGGCGGAGACCTGCAAGGCGATGACG
AACCAGCTCCTGTTGGACAAGGCGCGGGGGACAGGGAAGAATTTCTTTGG
CGGCTACGTGGAGGTGAAAGAGACGAAAATGGTGGTGGACACGGAGGCGA
CGGTGGGGAAGCGCTTGAAGGCAGCCTTTGGGTTGAAATGAGGTGGGAGA
GGGAGAGCCAGAGGCGGGAAGAGGGGCAGGGGAAAGAGCGTGGAAGCAGG
GAGGAATGGGCCGTATGCGGCACCTGACAAGCGAGCTGATGGCCTTGAGG
GAGGTGCGCGGCAAACGCCGGATAAGAAGGGGAGGGGAGGTTAAGGAAGA
AGAGAGGGAGGATGTGAAGTGGAGGGGGATTTGCCCCAGGGTTGTGAACA
TAGCGACGGTAATAGGTGTGGATGGAGACGAGTCAGCAGCGGGCGATGTG
GATCCAGGCAATAAGTAATGGAAACCGGGTGCCAAGAATGAAAGGGCAAG
GATGTGGGGCCCTCC
back to top

Coding sequence (CDS) from alignment at CM002471.1:288522..289986-

>rna7302 ID=rna7302|Name=rna7302|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002471.1:288522..289986- (Nannochloropsis gaditana)
GGCTACTTCACCAATGAGCAACTCCAGGCGTTGGAGGTGGCGCGTCGTGA
GGTGCCGTCCTCGGCCGCATCCTACTGGCAGAAAATCGCCAGCAAGGTAC
CCGGACAGACGGCGGAGACCTGCAAGGCGATGACGAACCAGCTCCTGTTG
GACAAGGCGCGGGGGACAGGGAAGAATTTCTTTGGCGGCTACGTGGAGGT
GAAAGAGACGAAAATGGTGGTGGACACGGAGGCGACGGTGGGGAAGCGCT
TGAAGGCAGCCTTTGGGTTGAAATGAGCCGTAGCCGCCAGGCCCCTCAAA
TGCTGGGCAACTTCTTCAAGACGGCAGCTCCCTCCGCAGCCACTCCCGGG
CAAGGCAAAGTAGGCGCCAAGGCCGGAAAGGGCGGGTCTCGCCTCAACTT
GAAGAGCATCCCCAAAGAAGCCCCCCCCGCACCCAAGAAACTTGCCTCCA
TCGCGGCCGGTATCACTCCAGGGGGCCCGAAGGTACCGTCTTTCCCCTTC
AAGCTGGGGCGGACGAAAGAGGCCAAGGAGGCCACGGCCCGCGTCGTGAA
TGGGAAGCTGGAGATGTCACAGTTATTCAACATGCGCGTGATTGCATCTC
TTTTGCTCCTGGCTGCGGTATGCAATGCCTTCCAAGCTCCCATTGTTTCT
CGAGGGCTACTTCACCAATGAGCAACTCCAGGCGTTGGAGGTGGCGCGTC
GTGAGGTGCCGTCCTCGGCCGCATCCTACTGGCAGAAAATCGCCAGCAAG
GTACCCGGACAGACGGCGGAGACCTGCAAGGCGATGACGAACCAGCTCCT
GTTGGACAAGGCGCGGGGGACAGGGAAGAATTTCTTTGGCGGCTACGTGG
AGGTGAAAGAGACGAAAATGGTGGTGGACACGGAGGCGACGGTGGGGAAG
CGCTTGAAGGCAGCCTTTGGGTTGAAATGAGCCGTAGCCGCCAGGCCCCT
CAAATGCTGGGCAACTTCTTCAAGACGGCAGCTCCCTCCGCAGCCACTCC
CGGGCAAGGCAAAGTAGGCGCCAAGGCCGGAAAGGGCGGGTCTCGCCTCA
ACTTGAAGAGCATCCCCAAAGAAGCCCCCCCCGCACCCAAGAAACTTGCC
TCCATCGCGGCCGGTATCACTCCAGGGGGCCCGAAGGTACCGTCTTTCCC
CTTCAAGCTGGGGCGGACGAAAGAGGCCAAGGAGGCCACGGCCCGCGTCG
TGAATGGGAAGCTGGAGATGTCACAGTTATTCAACATGCGCGTGATTGCA
TCTCTTTTGCTCCTGGCTGCGGTATGCAATGCCTTCCAAGCTCCCATTGT
TTCTCGAGGGCTACTTCACCAATGAGCAACTCCAGGCGTTGGAGGTGGCG
CGTCGTGAGGTGCCGTCCTCGGCCGCATCCTACTGGCAGAAAATCGCCAG
CAAGGTACCCGGACAGACGGCGGAGACCTGCAAGGCGATGACGAACCAGC
TCCTGTTGGACAAGGCGCGGGGGACAGGGAAGAATTTCTTTGGCGGCTAC
GTGGAGGTGAAAGAGACGAAAATGGTGGTGGACACGGAGGCGACGGTGGG
GAAGCGCTTGAAGGCAGCCTTTGGGTTGAAATGAGCCGTAGCCGCCAGGC
CCCTCAAATGCTGGGCAACTTCTTCAAGACGGCAGCTCCCTCCGCAGCCA
CTCCCGGGCAAGGCAAAGTAGGCGCCAAGGCCGGAAAGGGCGGGTCTCGC
CTCAACTTGAAGAGCATCCCCAAAGAAGCCCCCCCCGCACCCAAGAAACT
TGCCTCCATCGCGGCCGGTATCACTCCAGGGGGCCCGAAGGTACCGTCTT
TCCCCTTCAAGCTGGGGCGGACGAAAGAGGCCAAGGAGGCCACGGCCCGC
GTCGTGAATGGGAAGCTGGAGATGTCACAGTTATTCAACATGCGCGTGAT
TGCATCTCTTTTGCTCCTGGCTGCGGTATGCAATGCCTTCCAAGCTCCCA
TTGTTTCTCGAG
back to top
Synonyms
Publications