EWM23388.1, cds7285 (CDS) Nannochloropsis gaditana

Overview
NameEWM23388.1
Unique Namecds7285
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:289893..289983 -
Alignment locationCM002471.1:289292..289578 -
Alignment locationCM002471.1:288846..289121 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23388.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100189g4.10209.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:289893..289983 -
CM002471.1supercontigCM002471.1:289292..289578 -
CM002471.1supercontigCM002471.1:288846..289121 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23388.1 vs. NCBI_GenBank
Match: gi|585104400|gb|EWM23388.1| (hypothetical protein Naga_100189g4 [Nannochloropsis gaditana])

HSP 1 Score: 434.876 bits (1117), Expect = 3.939e-154
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query:    1 MSQLFNMRVIASLLLLAAVCNAFQAPIVSRGRSRQAPQMLGNFFKTAAPSAATPGQGKVGAKAGKGGSRLNLKSIPKEAPPAPKKLASIAAGITPGGPKVPSFPFKLGRTKEAKEATARVVNGKLEGYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFGLK 217
            MSQLFNMRVIASLLLLAAVCNAFQAPIVSRGRSRQAPQMLGNFFKTAAPSAATPGQGKVGAKAGKGGSRLNLKSIPKEAPPAPKKLASIAAGITPGGPKVPSFPFKLGRTKEAKEATARVVNGKLEGYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFGLK
Sbjct:    1 MSQLFNMRVIASLLLLAAVCNAFQAPIVSRGRSRQAPQMLGNFFKTAAPSAATPGQGKVGAKAGKGGSRLNLKSIPKEAPPAPKKLASIAAGITPGGPKVPSFPFKLGRTKEAKEATARVVNGKLEGYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFGLK 217          
BLAST of EWM23388.1 vs. NCBI_GenBank
Match: gi|299473443|emb|CBN77840.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 87.4261 bits (215), Expect = 1.082e-17
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 0
Query:  114 KEATARVVNGKLEGYFTNEQLQALEVARREVPS-SAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFG 215
            +E + +    K EG FT  Q +A + AR+EVPS    +YW+KIA++VPGQ A  CK +   +L + A GT  N+FGGY+E  ET   VD EA +  ++   FG
Sbjct:  103 RERSRKASTRKSEGVFTPPQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFG 205          
BLAST of EWM23388.1 vs. NCBI_GenBank
Match: gi|873230551|emb|CEM10753.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 71.633 bits (174), Expect = 9.062e-12
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 0
Query:  129 FTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVV 200
            +   Q+ ALE ARREVPS A  YW +IA +VPG+TA  C+      L ++A GT KNFF   + VKE +M V
Sbjct:   99 WEKNQIIALETARREVPSGAFLYWDQIAERVPGKTATQCEDYVRTQLFNRAAGTNKNFFKEQIFVKEPEMKV 170          
The following BLAST results are available for this feature:
BLAST of EWM23388.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104400|gb|EWM23388.1|3.939e-154100.00hypothetical protein Naga_100189g4 [Nannochloropsi... [more]
gi|299473443|emb|CBN77840.1|1.082e-1742.72expressed unknown protein [Ectocarpus siliculosus][more]
gi|873230551|emb|CEM10753.1|9.062e-1248.61unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7302rna7302Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications