EWM23411.1, cds7266 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|585104427|gb|EWM23411.1| (hypothetical protein Naga_100077g12 [Nannochloropsis gaditana]) HSP 1 Score: 1529.61 bits (3959), Expect = 0.000e+0 Identity = 750/750 (100.00%), Postives = 750/750 (100.00%), Query Frame = 0 Query: 1 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGEMENGALGRILEMLGGGCYAHARACYHVCRKLADDRTLPTIWKGGDVFSARQKLVKVGEHGGMGGRERVMGGDGTRLGLAALSPSRSPAPFFVPPRSHLSGQAPVFVAKASLGEKGGEERSSLKPVPGDRERAFPSGKHLGSMVTRNSSHSVSVPSFPPVTAAGGDMGEGQTPLSFDSFSDQPFGTRQYRQFNSPDDLLSASSLLLPSQADPGGWFTGRSTFFWGGGDTRVEKGGNGGEEEKGDGWGAGDVMMMMARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 750 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGEMENGALGRILEMLGGGCYAHARACYHVCRKLADDRTLPTIWKGGDVFSARQKLVKVGEHGGMGGRERVMGGDGTRLGLAALSPSRSPAPFFVPPRSHLSGQAPVFVAKASLGEKGGEERSSLKPVPGDRERAFPSGKHLGSMVTRNSSHSVSVPSFPPVTAAGGDMGEGQTPLSFDSFSDQPFGTRQYRQFNSPDDLLSASSLLLPSQADPGGWFTGRSTFFWGGGDTRVEKGGNGGEEEKGDGWGAGDVMMMMARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR Sbjct: 1 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGEMENGALGRILEMLGGGCYAHARACYHVCRKLADDRTLPTIWKGGDVFSARQKLVKVGEHGGMGGRERVMGGDGTRLGLAALSPSRSPAPFFVPPRSHLSGQAPVFVAKASLGEKGGEERSSLKPVPGDRERAFPSGKHLGSMVTRNSSHSVSVPSFPPVTAAGGDMGEGQTPLSFDSFSDQPFGTRQYRQFNSPDDLLSASSLLLPSQADPGGWFTGRSTFFWGGGDTRVEKGGNGGEEEKGDGWGAGDVMMMMARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 750
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|553182381|ref|XP_005853721.1| (poly -binding protein 3 isoform 2, partial [Nannochloropsis gaditana CCMP526] >gi|422295338|gb|EKU22637.1| poly -binding protein 3 isoform 2, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0 Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0 Query: 1 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKL 338 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKL Sbjct: 129 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKL 466
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|553182385|ref|XP_005853722.1| (rna binding protein [Nannochloropsis gaditana CCMP526] >gi|553185032|ref|XP_005854191.1| rna binding protein [Nannochloropsis gaditana CCMP526] >gi|422294868|gb|EKU22168.1| rna binding protein [Nannochloropsis gaditana CCMP526] >gi|422295339|gb|EKU22638.1| rna binding protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 248.054 bits (632), Expect = 3.155e-75 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 Query: 628 MARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 750 MARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR Sbjct: 1 MARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 123
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|1035240706|ref|XP_016892110.1| (PREDICTED: poly(rC)-binding protein 2-like isoform X6 [Cynoglossus semilaevis]) HSP 1 Score: 62.3882 bits (150), Expect = 8.382e-7 Identity = 68/225 (30.22%), Postives = 102/225 (45.33%), Query Frame = 0 Query: 149 RAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIE-RLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSS-SPSFESLGMPASQSLP-PFPPGHHHHHPVWKDAQ-GCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKF 369 +A + + +EED+ SS AT + +TL ++VP + LIGKGG + EI+ TG QV + ++ ER + + G T Q I I +++ C V E S PKG T+ P S S + SSS++ SP L A Q P P P + + AQ GC ++ +PN + +IGR G +S I + SG +K Sbjct: 70 KAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQ--CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG------TPQSI----IECVKQICVVMLE-----SPPKGV-----TIPYRPKPSGSPVIFAGGQSSSAAISPQLTKLHQLAMQQTPFPIAPSNQGFAGIDASAQTGCQEMT--IPNDLIGCIIGRQGAKISEIRQMSGAQIKI 270
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|1188097474|ref|XP_020795347.1| (poly(rC)-binding protein 3-like [Boleophthalmus pectinirostris]) HSP 1 Score: 63.1586 bits (152), Expect = 8.996e-7 Identity = 65/232 (28.02%), Postives = 101/232 (43.53%), Query Frame = 0 Query: 149 RAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIE-RLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPP----PSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHH-HHPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGE 374 RA +A EED+ S+ + T + +TL ++ P + LIGKGGS + EI+ TG QV + ++ ER V + G+ Q IT +RH+ C V E P P PK GA + + ++ A + + + F L A Q LP P G H P + +L +PN + +IGR G+ ++ I + SG +K S + Sbjct: 72 RAFSMIALKFEEDITSAMLNSNVTSKPPVTLRLVFPGSQ--CGSLIGKGGSKIKEIRESTGAQVQVAGDMLPESTERAVTISGT-------PQAITQCVRHI---CSVMLESPPKGATIPYRPKAMSAGAHAVL---APQHAAQAFAIPGQYAFAHQDFTKLQQLALQHLPLPPLGQSHPTFPGLDASASTSSQELSIPNDFIGCIIGRQGSKINEIRQASGAHIKIASAAD 288 The following BLAST results are available for this feature:
BLAST of EWM23411.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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