EWM23410.1, cds7255 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|585104426|gb|EWM23410.1| (dna topoisomerase i [Nannochloropsis gaditana]) HSP 1 Score: 484.952 bits (1247), Expect = 3.339e-173 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0 Query: 1 MGSGWIADKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239 MGSGWIADKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR Sbjct: 1 MGSGWIADKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1092508146|ref|WP_070494219.1| (DNA topoisomerase I [Corynebacterium sp. HMSC30G07] >gi|1081233881|gb|OFT77113.1| DNA topoisomerase I [Corynebacterium sp. HMSC30G07]) HSP 1 Score: 162.54 bits (410), Expect = 4.627e-42 Identity = 96/232 (41.38%), Postives = 127/232 (54.74%), Query Frame = 0 Query: 8 DKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239 D ++ LY LI++RT+AS M DA+ + V GE T +AE TG+TI G+LRA SD D + L ++ G AL+ G H+T+PP RYT+ S V+ +EELGIGRPSTYA+II+ ++ R Y A +G A+VPT V F V LLE +F A VD FTS ME +LD IA GN DR +L +Y G A +T+ AI R Sbjct: 404 DAEEFKLYELIWQRTVASQMTDARGNSTKITV------TGEANTGEVAEFAATGRTITFPGWLRAY-----------------SDQD------KETHLPQVAEGDALNVNGISADEHSTNPPARYTEASLVKKMEELGIGRPSTYASIIKTIQDRGYVAARGNALVPTWVAFSVVGLLENNFDALVDYDFTSSMEDELDEIAHGNEDRTQWLTGFYFGDADARDTMADAIAR 606
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|917636532|ref|WP_052205533.1| (DNA topoisomerase I [Corynebacterium riegelii] >gi|914295879|gb|AKV59255.1| DNA topoisomerase I [Corynebacterium riegelii]) HSP 1 Score: 162.155 bits (409), Expect = 5.019e-42 Identity = 96/232 (41.38%), Postives = 127/232 (54.74%), Query Frame = 0 Query: 8 DKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239 D ++ LY LI++RT+AS M DA+ + V GE T +AE TG+TI G+LRA SD D + L ++ G AL+ G H+T+PP RYT+ S V+ +EELGIGRPSTYA+II+ ++ R Y A +G A+VPT V F V LLE +F A VD FTS ME +LD IA GN DR +L +Y G A +T+ AI R Sbjct: 404 DAEEFKLYELIWQRTVASQMTDARGNSTKITV------TGEANTGEVAEFAATGRTITFPGWLRAY-----------------SDQD------KETHLPQVAEGDALNVNGISADEHSTNPPARYTEASLVKKMEELGIGRPSTYASIIKTIQDRGYVAARGNALVPTWVAFSVVGLLENNFDALVDYDFTSSMEDELDEIAHGNEDRTQWLTGFYFGDADARDTMADAIAR 606
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1092476383|ref|WP_070465058.1| (DNA topoisomerase I [Corynebacterium sp. HMSC29G08] >gi|1081238602|gb|OFT81582.1| DNA topoisomerase I [Corynebacterium sp. HMSC29G08]) HSP 1 Score: 161.77 bits (408), Expect = 8.114e-42 Identity = 96/232 (41.38%), Postives = 127/232 (54.74%), Query Frame = 0 Query: 8 DKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239 D ++ LY LI++RT+AS M DA+ + V GE T +AE TG+TI G+LRA SD D + L ++ G AL+ G H+T+PP RYT+ S V+ +EELGIGRPSTYA+II+ ++ R Y A +G A+VPT V F V LLE +F A VD FTS ME +LD IA GN DR +L +Y G A +T+ AI R Sbjct: 404 DAEEFKLYELIWQRTVASQMTDARGNSTKITV------TGEANTGEVAEFAATGRTITFPGWLRAY-----------------SDQD------KETHLPQVAEGDALNVDGITADEHSTNPPARYTEASLVKKMEELGIGRPSTYASIIKTIQDRGYVAARGNALVPTWVAFSVVGLLENNFDALVDYDFTSSMEDELDEIAHGNEDRTQWLTGFYFGDADARDTMADAIAR 606
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|947144875|ref|WP_055917968.1| (DNA topoisomerase I [Leifsonia sp. Leaf336] >gi|945089555|gb|KQR52084.1| DNA topoisomerase I [Leifsonia sp. Leaf336]) HSP 1 Score: 160.229 bits (404), Expect = 2.608e-41 Identity = 101/237 (42.62%), Postives = 134/237 (56.54%), Query Frame = 0 Query: 11 KLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRAL---REEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYY------RGLTSAIETVEGAID 238 +L LY LI++RT+AS M DAK + +V VEA+ G GT +AE +G I RGFL A R+EE+ A G D PP LTPGQAL+ H T+PP RYT+ S V+T+EELGIGRPST+A+II + R Y +G A+VP+ V F V +LLE +F V FT++ME LD IA G A+RV +L+ +Y +GL I+ + G ID Sbjct: 393 ELRLYDLIWKRTVASQMADAKGQTASVTVEAKIAEGELDGT--VAEFTASGTVITFRGFLNAYEEGRDEERNADA-------GGDAKLPP----------LTPGQALAVEDVAADGHETTPPPRYTEASLVKTLEELGIGRPSTFASIISTIIDRGYVTQRGQALVPSWVAFSVVRLLEDYFADLVQYDFTAEMEDDLDRIADGEAERVDWLNSFYFGSDKHKGLRRVIDNL-GEID 609
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1200416936|gb|OUV34080.1| (DNA topoisomerase I [Balneolaceae bacterium TMED105]) HSP 1 Score: 155.992 bits (393), Expect = 7.184e-40 Identity = 90/232 (38.79%), Postives = 124/232 (53.45%), Query Frame = 0 Query: 10 KKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYY---RGLTSAIETVEGAID 238 ++ LY LI++RT+A M DA++E V VEAR G H+ E +G+ +L GF RA E P A+ D P P+L GQ+L C + + H T PP R+T+ + V+ +E+ GIGRPSTYATII ++ R Y +G A+ PT F V +LLE +FP V+ TS +E +LD IA+G D YL +YY RGL +E E ID Sbjct: 387 REYKLYDLIWKRTVAFQMADAQLEFTNVVVEAR-------GDKHVGEFKASGKQVLFPGFFRAYVEGSDDPEAAXDSQ------DSPLPTLDK--------GQSLDCQDIEAVGHETKPPARFTEATLVKELEKQGIGRPSTYATIISTIQDRGYVVTEGKALAPTFTAFAVTKLLEEYFPDIVNTXXTSXLEQKLDGIAQGEVDPTLYLRDYYLGDRGLKEVVEXQESKID 597
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|299470508|emb|CBN78499.2| (DNA topoisomerase I (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 155.992 bits (393), Expect = 8.141e-40 Identity = 91/240 (37.92%), Postives = 133/240 (55.42%), Query Frame = 0 Query: 2 GSGWIADKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYY---RGLTSAIETVEGAID 238 G G +++ LY L+Y RTLAS M +++ + TV++ A G+ L +G+T + GFL+A REE + G D + + L L G + C + H TSPP R+++ SF++ +E G+GRPSTYA+II L+TR Y ++G ++ P+L GFVVA LL HFP F D GFT++ME +LD IA+G +RV YL EYY GL + + + ID Sbjct: 530 GGGRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQE--------TELPLLVEGGKVVCEDARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKRATID 761
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1054764745|ref|WP_066528786.1| (DNA topoisomerase I [Corynebacterium bouchesdurhonense]) HSP 1 Score: 154.451 bits (389), Expect = 2.546e-39 Identity = 93/232 (40.09%), Postives = 128/232 (55.17%), Query Frame = 0 Query: 8 DKKKLDLYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVEGAIDR 239 D ++ LY LI++RT+AS M+DA+ V V A + R GER AE TG+TI G+LRA + + T L +++ G AL H+T+PP RYT+ S V+ +E+LGIGRPSTYA+II+ ++ R Y A +G A+VPT V F V L+E +F A VD FTS ME +LD IA GN +R +L +Y G A +T+ AI R Sbjct: 398 DAEEFKLYELIWQRTVASQMEDARGNSTKVTV-AGTARSGER-----AEFAATGRTISFPGWLRAYSDTQDKETR----------------------LPQVSEGDALETTKVTADGHSTNPPARYTEASLVKKMEDLGIGRPSTYASIIKTIQDRGYVAARGNALVPTWVAFSVVGLMENNFDALVDYDFTSSMEDELDEIAHGNENRTQWLSGFYFGDADARDTMADAIAR 601
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|938261428|gb|KPP96696.1| (DNA topoisomerase TopA [Bacteroidetes bacterium HLUCCA01]) HSP 1 Score: 154.451 bits (389), Expect = 2.806e-39 Identity = 91/222 (40.99%), Postives = 123/222 (55.41%), Query Frame = 0 Query: 14 LYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHL-AELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYYRGLTSAIETVE 234 LY LI++RT+A+ M +A++E ++ A P GT+ + A TG+ IL GF RA E P A L D + P P +L Q L+ + L H T PP RYT+ S V+ +E+ G+GRPSTYA+II+ + R Y +G A+VPT F V +LLE +FP VD FTS+ME +LD IA GN DR YL+ YY G T + VE Sbjct: 395 LYDLIWKRTMATQMANARLEFTNASITASLPPAA--GTDPVNAVFRATGKRILFPGFFRAYVEGSDDPAADLE------DQEKPLP--------KLEIDQKLNPESIEALSHETKPPSRYTEASLVKQLEKEGVGRPSTYASIIDTILNRGYTQKQGNALVPTFTAFAVTELLEKYFPDLVDVQFTSEMENKLDEIASGNEDRTRYLERYYAGETGLRQMVE 600
BLAST of EWM23410.1 vs. NCBI_GenBank
Match: gi|1142779857|ref|WP_077026509.1| (DNA topoisomerase I [Fuerstia marisgermanicae] >gi|1140110773|gb|APZ95330.1| DNA topoisomerase 1 [Fuerstia marisgermanicae]) HSP 1 Score: 153.68 bits (387), Expect = 4.475e-39 Identity = 90/228 (39.47%), Postives = 120/228 (52.63%), Query Frame = 0 Query: 14 LYTLIYERTLASVMKDAKMERKTVAVEARSPRGGERGTNHLAELVVTGQTILTRGFLRALREEEQAPTASLSPTGPGSDPDGPPPSLSPSFLDRLTPGQALSCLGTKVLLHATSPPYRYTQGSFVRTVEELGIGRPSTYATIIEVLKTRRYFAMKGTAMVPTLVGFVVAQLLEGHFPAFVDAGFTSQMEGQLDLIAKGNADRVSYLDEYY---RGLTSAIETVEGAID 238 LY LI++RT+A+ M DAK+ V + A A+ +G+T+ GF RA E P A+L D D P P L+ + + C + + H T PP RYT+ S VR +E GIGRPSTYA+II ++ R Y G+ +VPT G V +LLE HFP VD GFT+ ME LD IA GNADR+ YL E+Y G+ ++ E ID Sbjct: 397 LYDLIWKRTMATQMADAKLRFDNVTITAGD-----------ADFRSSGRTVEFPGFFRAYVEGSDDPDAALD------DQDSPLPPLAEN--------DKVGCEDVEAIPHETKPPARYTEASLVRKLEAEGIGRPSTYASIIGTIQDREYVNKNGSQLVPTFKGLAVTKLLEKHFPKLVDFGFTAGMEQTLDDIATGNADRLPYLREFYAGDEGINEQVKKHESEID 599 The following BLAST results are available for this feature:
BLAST of EWM23410.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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